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The map label for this gene is cspC [H]

Identifier: 148267252

GI number: 148267252

Start: 898363

End: 898563

Strand: Direct

Name: cspC [H]

Synonym: SaurJH9_0817

Alternate gene names: 148267252

Gene position: 898363-898563 (Clockwise)

Preceding gene: 148267251

Following gene: 148267257

Centisome position: 30.91

GC content: 39.8

Gene sequence:

>201_bases
ATGAATAACGGTACAGTTAAATGGTTTAATGCAGAAAAAGGTTTTGGTTTCATCGAAAGAGAAGATGGTAGCGACGTATT
CGTACACTTCTCAGCAATCGCTGAAGATGGATACAAATCATTAGAAGAAGGCCAAAAAGTTGAATTCGACATCGTTGAAG
GCGACCGTGGCGAGCAAGCTGCAAACGTAGTTAAAATGTAA

Upstream 100 bases:

>100_bases
CGTGAAGAAAAATGTGAGTTATTTATATAGAATATTCTCCTTTTCATTTATGAATTTGTTACAAAATATTTAGTGCAAAA
GCACGACGGAGGTATTCAAT

Downstream 100 bases:

>100_bases
TTTTAACTTATTCAAACAGTCCTTATTATAGGGCTGTTTTTTTATGCTTTAAATCGATAACAGTTGGTGTGGTAAAAGCA
CTAGCCGTTATTTTTTTGTC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQAANVVKM

Sequences:

>Translated_66_residues
MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQAANVVKM
>Mature_66_residues
MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQAANVVKM

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=50.7692307692308, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=51.5151515151515, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=51.5151515151515, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=51.5151515151515, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=66.1538461538461, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=64.0625, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=62.5, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=65.0793650793651, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=60.9375, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=58.4615384615385, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=50.7462686567164, Blast_Score=74, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24663131, Length=66, Percent_Identity=54.5454545454545, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7374; Mature: 7374

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
CCCCEEEEEECCCCCCEEEECCCCEEEEEEEEHHCCCHHHHHCCCEEEEEEEECCCCCCC
ANVVKM
CCEECC
>Mature Secondary Structure
MNNGTVKWFNAEKGFGFIEREDGSDVFVHFSAIAEDGYKSLEEGQKVEFDIVEGDRGEQA
CCCCEEEEEECCCCCCEEEECCCCEEEEEEEEHHCCCHHHHHCCCEEEEEEEECCCCCCC
ANVVKM
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]