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The map label for this gene is yvcD [H]

Identifier: 148267223

GI number: 148267223

Start: 862773

End: 864212

Strand: Direct

Name: yvcD [H]

Synonym: SaurJH9_0787

Alternate gene names: 148267223

Gene position: 862773-864212 (Clockwise)

Preceding gene: 148267222

Following gene: 148267224

Centisome position: 29.68

GC content: 29.65

Gene sequence:

>1440_bases
ATGGCGCAAAAGAATAATAATGTAATTCCAATGACTTTTGATGATGCATTTTATCGTAAAATGGCTAAACAGAAGTTTAA
ACAAAGAGAATATAAACGAGCTGCTGAATACTTTGAAAAAGTGTTAGAATTGTCACCTGATGATCTGGAAATTCAAATTG
ATTATGCACAATGTCTAGTGCAACTTGGTATTGCTAAAAAAGCAGAACATTTATTTTATGACAATATTATTTATAATAGG
CATCTAGAAGATAGCTTTTATGAATTGAGTCAGCTCAACATTGAAGTTAACGAACCAAACAAGGCATTCTTGTTTGGTAT
TAATTATGTTATTGTTAGCGACGACCAAGATTATAGAGATGAATTAGATCAAATGTTTGATGTGAAATATCAAAGCGAAG
AACAAATTGAACTTGAAGCTCAATTGTTTGTAGTTCAAATACTATTCCAATATCTTTTTTCTCAAGGTCGATTAAAAGAT
GCAAAGAATTATGTCTTACATCAACCACAAGAAGTTCAAGATCATCGTGTCGTACGTAATTTATTGGCAATGTGTTATTT
ATATCTCGGTGAATATGATACGGCTAAAGCATTGTACGAAGCACTATTACAAGAGGATAGTACAGATATATATGCATTAT
GCCATTATACTTTGCTACTTTATAACACTAAGGAAAATGAACAATATCAAAAATATTTAAAAATATTAAACAAAGTTGTA
CCTATGAATGACGATGAAAGTTTTAAATTAGGTATTGTATTAAGTTATTTAAAGCAGTATCGTGCATCACAACAATTGTT
GTACCCTTTATATAAAAAAGGGAAATTTTTATCAATTCAAATGTACAATGCTTTAGCATATAATTATTATTATTTAGGTG
AAGAAGACGAAAGTCATTACTACTGGGATAAATTGAAGCAAATTTCTAAAGTGGAAATTGGACATGCGCCTTGGGTAATT
GAAAATAGCAAAGAAGTTTTTGACCAACATATTTTGCCATTACTTCAAAGTGATGACAGTCATTATCGTTTATATGGTAT
TTTTTTATTGGATCAATTAAATGGTAAAGAAATTGTGATGACGGAAAGTATTTGGCAGGTTCTGGAAAATCTAAATAATT
ATGAGAAATTGTATTTAACGTATTTAGTTCAAGGTTTAACGCTCAATAAATTAGACTTCATTCATCGCGGCTTGTTAACG
CTTTACCAAAATGAATTATTTGTAAGTGAAAATGATTTAATGGTTGCATGGATTAATCAAGGTGAACTCATAATTGCTGA
AAAAGTAGATTTAACTGATGTTGAGCCATATATCGGTGCGTTTATTTATTTGTATTTTAAAAATCAACCTCGAAACGTTA
CAAAGAAGCAAATTACAACATGGTTAGGCATAACACAATATAAACTGAACAAAATGATTGAATTTCTCTTGAGCATATAG

Upstream 100 bases:

>100_bases
AAAGTTGCAGCTGGTACGGTTGTTTCAAAAGATATACCGGATAATGGATTTGCATATGGCAACCCTATGTATATAAAAAT
GATTAGGAGGTGACAATTTT

Downstream 100 bases:

>100_bases
ATTTATGAAAAGTTAGATTTATTATATAATGCGCATAATGATTAATAATGAGGAGGCGTTAATAAAATGACTGAAATAGA
TTTTGATATAGCAATTATCG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNR
HLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKD
AKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVI
ENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLT
LYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI

Sequences:

>Translated_479_residues
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNR
HLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKD
AKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVI
ENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLT
LYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>Mature_478_residues
AQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRH
LEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDA
KNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVP
MNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIE
NSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTL
YQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57067; Mature: 56936

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLV
CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
QLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEECCCCCEEEEEEEEEEECCCCHHHH
ELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRN
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHH
LLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHEEEEEEEEECCCCHHHHHHHHHHHHHC
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHY
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCH
YWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVM
HHHHHHHHHHEECCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEE
TESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQ
HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEECC
GELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
CCEEEEECCCCCCCCHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLV
CCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH
QLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRD
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEECCCCCEEEEEEEEEEECCCCHHHH
ELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRN
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHH
LLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVV
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHEEEEEEEEECCCCHHHHHHHHHHHHHC
PMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHY
CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCH
YWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVM
HHHHHHHHHHEECCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEE
TESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQ
HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEECCCEEEEEECC
GELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
CCEEEEECCCCCCCCHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]