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The map label for this gene is yabO [H]

Identifier: 148266965

GI number: 148266965

Start: 572580

End: 572843

Strand: Direct

Name: yabO [H]

Synonym: SaurJH9_0528

Alternate gene names: 148266965

Gene position: 572580-572843 (Clockwise)

Preceding gene: 148266964

Following gene: 148266966

Centisome position: 19.7

GC content: 34.85

Gene sequence:

>264_bases
ATGAGATTAGATAAATATTTAAAAGTATCACGGTTAATAAAGCGACGTACGCTAGCAAAAGAAGTAAGTGATCAAGGTAG
AATTACAATAAATGGTAATGTTGCTAAAGCTGGATCGGATGTTAAAGTTGAAGATGTGCTGACGATTCGCTTTGGTCAAA
AATTAGTAACAGTTAAAGTAACTGCATTAAATGAACATGCATCTAAAGATAACGCGAAGGGCATGTATGAAATCATTGAA
GAGCGTCGACTTGAAGAAGCGTAA

Upstream 100 bases:

>100_bases
TATTTGCAGAGCATTTTTTTAATTTATATGAGAAGACGAAGGATAAGTCATTTGATGAGGCCTCGTTAAAGCAGTGGCTA
GAAAAAGGGGAGAGTAATAC

Downstream 100 bases:

>100_bases
ATTGGAGGTGACAAGCAATGAAAAATAAAGTAGAACATATAGAAAATCAGTACACGTCGCAAGAGAACAAGAAAAAACAA
CGTCAAAAAATGAAAATGCG

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MRLDKYLKVSRLIKRRTLAKEVSDQGRITINGNVAKAGSDVKVEDVLTIRFGQKLVTVKVTALNEHASKDNAKGMYEIIE
ERRLEEA

Sequences:

>Translated_87_residues
MRLDKYLKVSRLIKRRTLAKEVSDQGRITINGNVAKAGSDVKVEDVLTIRFGQKLVTVKVTALNEHASKDNAKGMYEIIE
ERRLEEA
>Mature_87_residues
MRLDKYLKVSRLIKRRTLAKEVSDQGRITINGNVAKAGSDVKVEDVLTIRFGQKLVTVKVTALNEHASKDNAKGMYEIIE
ERRLEEA

Specific function: Involved In The Recycling Of Free 50s Ribosomal Subunits That Still Carry A Nascent Chain. Binds RNA More Specifically Than DNA. Binds With Very High Affinity To The Free 50s Ribosomal Subunit. Does Not Bind It When It Is Part Of The 70s Ribosome. [C]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 9857; Mature: 9857

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLDKYLKVSRLIKRRTLAKEVSDQGRITINGNVAKAGSDVKVEDVLTIRFGQKLVTVKV
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCCHHHEEEEECCCEEEEEEE
TALNEHASKDNAKGMYEIIEERRLEEA
EECCCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLDKYLKVSRLIKRRTLAKEVSDQGRITINGNVAKAGSDVKVEDVLTIRFGQKLVTVKV
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEECCCCCCCHHHEEEEECCCEEEEEEE
TALNEHASKDNAKGMYEIIEERRLEEA
EECCCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]