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The map label for this gene is yydK [H]

Identifier: 148266689

GI number: 148266689

Start: 302140

End: 302844

Strand: Reverse

Name: yydK [H]

Synonym: SaurJH9_0249

Alternate gene names: 148266689

Gene position: 302844-302140 (Counterclockwise)

Preceding gene: 148266692

Following gene: 148266667

Centisome position: 10.42

GC content: 33.05

Gene sequence:

>705_bases
TTGTTAAAGTATGAACATATTGCTAAGCAACTTAATGCGTTTATACATCAATCTAATTTCAAACCCGGTGATAAATTGCC
AAACGTGACGCAATTAAAAGAACGTTATCAAGTAAGTAAGAGTACTATCATTAAAGCATTAGGCTTATTGGAACAAGATG
GTTTGATCTATCAAGCACAAGGCAGTGGTATTTATGTGAGAAATATTGCAGATGCCAATCGTATCAACGTCTTTAAGACT
AATGGTTTCTCTAAAAGTTTAGGTGAACATCGAATGACAAGTAAGGTACTTGTTTTTAAGGAGATGGCAACGCCACCTAA
ATCTGTACAAGATGAACTCCAATTAAATGCAGATGATACCGTCTACTATTTAGAGCGATTAAGATTCGTGGACGATGATG
TTTTATGTATCGAATATTCTTATTATCATAAAGAAATCGTGAAATATTTAAATGATGATATTGCTAAGGGCTCTATCTTC
GATTATTTAGAATCAAACATGAAACTTCGTATTGGTTTTTCAGATATTTTCTTTAATGTAGATAAACTCACTTCAAGTGA
AGCTTCATTACTACAATTGTCTACAGGTGAACCATGTTTACGTTACCACCAGACTTTTTATACAATGACTGGCAAACCCT
TTGATTCGTCTGACATCGTATTTCATTATCGTCATGCACAGTTTTATATTCCTAGTAAAAAGTAA

Upstream 100 bases:

>100_bases
CCTCCAATTATAATTGTACCGGTTCAATTTGTAAACGCCGATACAATTATAATATTTTGTGCTATAATAATTACAGACAA
AGTGAAACGAGGACAGAATA

Downstream 100 bases:

>100_bases
TAAATACATAAAAACGTCTATATCCCAGTTATAAACTGGAGTATAGACGTTTTTTTACGATAATAACAATGGCTCAAATT
GCTATTATCTTGCTTAGGTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLKYEHIAKQLNAFIHQSNFKPGDKLPNVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKT
NGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIF
DYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK

Sequences:

>Translated_234_residues
MLKYEHIAKQLNAFIHQSNFKPGDKLPNVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKT
NGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIF
DYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
>Mature_234_residues
MLKYEHIAKQLNAFIHQSNFKPGDKLPNVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKT
NGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIF
DYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=238, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786950, Length=223, Percent_Identity=26.0089686098655, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082252, Length=236, Percent_Identity=21.6101694915254, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27059; Mature: 27059

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKYEHIAKQLNAFIHQSNFKPGDKLPNVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQ
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDT
CCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHEEEHHHCCCCCHHHHHHCCCCCCH
VYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNV
HHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEHHHHHEEH
DKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
HHHCCCCCCEEEECCCCHHHHHHHHHEEECCCCCCCCCEEEEEEEEEEECCCCC
>Mature Secondary Structure
MLKYEHIAKQLNAFIHQSNFKPGDKLPNVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQ
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
GSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDT
CCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHEEEHHHCCCCCHHHHHHCCCCCCH
VYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNV
HHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEHHHHHEEH
DKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
HHHCCCCCCEEEECCCCHHHHHHHHHEEECCCCCCCCCEEEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]