| Definition | Staphylococcus aureus subsp. aureus JH9, complete genome. |
|---|---|
| Accession | NC_009487 |
| Length | 2,906,700 |
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The map label for this gene is lcfB [H]
Identifier: 148266658
GI number: 148266658
Start: 266005
End: 267510
Strand: Reverse
Name: lcfB [H]
Synonym: SaurJH9_0218
Alternate gene names: 148266658
Gene position: 267510-266005 (Counterclockwise)
Preceding gene: 148266659
Following gene: 148266657
Centisome position: 9.2
GC content: 37.38
Gene sequence:
>1506_bases ATGAATTTCGATTGGATAAAAACGCGTTCAGACTTCGATGATGACAAGCCTGCCGTTATTGATCACGCAAAACAAACATC TTGGACATACCAACAACTCAATGCACGCGCTGATAATATGGCACATTATTTAACATCTCAAGGTGTTAAAAAAGGCGATG TTATCGGTATTTTTGCGCCAAATGATATTGCAATATTAGATTTATTGTTTGCTTGTTTTAAAACAGGTGCGGTTTTTTTA CCATTGAATTGGCGGCTTAACCCAAAAGAAATTGCAGCCATTGTGGAAGATGCACAATTAAAACTGCTCTTCTATGCTGA AAAACATTTAAGTTCACTCACCGATATTGACCAAAACTTATTGCATATGGATATTGATGTGGCGCAATATGATGAAATCG TAAATCCAGATTATCACCAACCTTTTCAAGCAACACCTGTTGAACCACAAGATCTTGCAGCATTAATTTATACAAGTGGT ACAACCGGATCACCTAAAGGTGTGATGTTCTCATATGAATCATTTGTTCATAACGGTGCAAACTTAGAGCTGACGTACAA GTTCAATTCAAACTATATTACGATTGTATCAACACCAATGTTCCATGTTTTAGGGTTTAACGATACTGTATTACCAGTAT TAATGTCAGGTGGCACACTTATTCTTCAACGTTACTTTAACGGCGAAGAATTGAATGACATGATTGCACAATATCACCCT ACATTTATTATCATGATTCCGACAATGTATTATAGTACGCTACGTGCTAGTAATTTTAATCCTGAAAATTTTAGAGCTAT GGATTATATCATCCAAGGTGGTTCACAACCATTACCAAGTATCCAAGCAGCTTTTAAACAATATGGCATAAACATTATTA ACGGCTATGGTTTAACTGAAGCACCTCTTGTACTTGTTAATACACCGGAAAATTCAAAACGTAAGCCAATGAGTATTGGT AAAGCAGTCATGTTCGTTGATGCACGTATCCTTGATGATAACGGTGAGGAAGTACCTACTGGTGAGATTGGCGAACTTGC AATTAAGGCTAAAAATGTCACGCCAGGATATTGGAATAAACCAGCAGAGACTGCCAAAGCATTTCATGGTCGTTATTTAT TAACTGGTGACTTAGCGAAGATGGACGACGATGGCGATATATTTATTATTGACCGCAAAAAAGAATTAATCATAACTGGT GGCGAAAATGTCTTACCATCTGAAGTCGAAAATGCTTTAGCTGAGCATCCACTAGTAGACCGGTGTGTGGTCGTTGGCTA TGATCATCCAAAATATGGTGAATCAATTGCTGCAGCCATTATACTTCGCGAAGATGAACCTCATTACGCTGAAATTTTAG ATCAACATATGCGAAGTCGTTTAGCAGGTTATAAAGTCCCAAGAATGTATGTACCAGTGACACATATGCCGTTAAACAGT ACGCAGAAACCAGATAAACTTGCGATTCGACAAATGATGAATGACAAAGTCTCACAAACACTTTAA
Upstream 100 bases:
>100_bases CATTTAAAATTAATTGATACCAGCATTTACAAAGAAAAATGGGGACAACTTAAACAATCAATTCATAAAGTATGAAAGTG AAGCTAAAGGGGGTATACTA
Downstream 100 bases:
>100_bases AGGTGATAAAAATTTTTGACATTTAGTGTAAGCGTTTACAAATAAAGCGTGTTGTTTTTGAATTAAATGCATTTCACATT AGTATTCATATTATTTTTAG
Product: AMP-dependent synthetase and ligase
Products: NA
Alternate protein names: Long-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 501; Mature: 501
Protein sequence:
>501_residues MNFDWIKTRSDFDDDKPAVIDHAKQTSWTYQQLNARADNMAHYLTSQGVKKGDVIGIFAPNDIAILDLLFACFKTGAVFL PLNWRLNPKEIAAIVEDAQLKLLFYAEKHLSSLTDIDQNLLHMDIDVAQYDEIVNPDYHQPFQATPVEPQDLAALIYTSG TTGSPKGVMFSYESFVHNGANLELTYKFNSNYITIVSTPMFHVLGFNDTVLPVLMSGGTLILQRYFNGEELNDMIAQYHP TFIIMIPTMYYSTLRASNFNPENFRAMDYIIQGGSQPLPSIQAAFKQYGINIINGYGLTEAPLVLVNTPENSKRKPMSIG KAVMFVDARILDDNGEEVPTGEIGELAIKAKNVTPGYWNKPAETAKAFHGRYLLTGDLAKMDDDGDIFIIDRKKELIITG GENVLPSEVENALAEHPLVDRCVVVGYDHPKYGESIAAAIILREDEPHYAEILDQHMRSRLAGYKVPRMYVPVTHMPLNS TQKPDKLAIRQMMNDKVSQTL
Sequences:
>Translated_501_residues MNFDWIKTRSDFDDDKPAVIDHAKQTSWTYQQLNARADNMAHYLTSQGVKKGDVIGIFAPNDIAILDLLFACFKTGAVFL PLNWRLNPKEIAAIVEDAQLKLLFYAEKHLSSLTDIDQNLLHMDIDVAQYDEIVNPDYHQPFQATPVEPQDLAALIYTSG TTGSPKGVMFSYESFVHNGANLELTYKFNSNYITIVSTPMFHVLGFNDTVLPVLMSGGTLILQRYFNGEELNDMIAQYHP TFIIMIPTMYYSTLRASNFNPENFRAMDYIIQGGSQPLPSIQAAFKQYGINIINGYGLTEAPLVLVNTPENSKRKPMSIG KAVMFVDARILDDNGEEVPTGEIGELAIKAKNVTPGYWNKPAETAKAFHGRYLLTGDLAKMDDDGDIFIIDRKKELIITG GENVLPSEVENALAEHPLVDRCVVVGYDHPKYGESIAAAIILREDEPHYAEILDQHMRSRLAGYKVPRMYVPVTHMPLNS TQKPDKLAIRQMMNDKVSQTL >Mature_501_residues MNFDWIKTRSDFDDDKPAVIDHAKQTSWTYQQLNARADNMAHYLTSQGVKKGDVIGIFAPNDIAILDLLFACFKTGAVFL PLNWRLNPKEIAAIVEDAQLKLLFYAEKHLSSLTDIDQNLLHMDIDVAQYDEIVNPDYHQPFQATPVEPQDLAALIYTSG TTGSPKGVMFSYESFVHNGANLELTYKFNSNYITIVSTPMFHVLGFNDTVLPVLMSGGTLILQRYFNGEELNDMIAQYHP TFIIMIPTMYYSTLRASNFNPENFRAMDYIIQGGSQPLPSIQAAFKQYGINIINGYGLTEAPLVLVNTPENSKRKPMSIG KAVMFVDARILDDNGEEVPTGEIGELAIKAKNVTPGYWNKPAETAKAFHGRYLLTGDLAKMDDDGDIFIIDRKKELIITG GENVLPSEVENALAEHPLVDRCVVVGYDHPKYGESIAAAIILREDEPHYAEILDQHMRSRLAGYKVPRMYVPVTHMPLNS TQKPDKLAIRQMMNDKVSQTL
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=536, Percent_Identity=27.7985074626866, Blast_Score=196, Evalue=3e-50, Organism=Homo sapiens, GI122937307, Length=492, Percent_Identity=24.7967479674797, Blast_Score=149, Evalue=4e-36, Organism=Homo sapiens, GI157311624, Length=501, Percent_Identity=23.5528942115768, Blast_Score=148, Evalue=1e-35, Organism=Homo sapiens, GI157311622, Length=501, Percent_Identity=23.5528942115768, Blast_Score=148, Evalue=1e-35, Organism=Homo sapiens, GI58082049, Length=501, Percent_Identity=23.5528942115768, Blast_Score=145, Evalue=6e-35, Organism=Homo sapiens, GI38505220, Length=504, Percent_Identity=24.6031746031746, Blast_Score=144, Evalue=1e-34, Organism=Homo sapiens, GI42544132, Length=499, Percent_Identity=24.0480961923848, Blast_Score=143, Evalue=3e-34, Organism=Homo sapiens, GI115511026, Length=501, Percent_Identity=24.9500998003992, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI187761345, Length=531, Percent_Identity=25.4237288135593, Blast_Score=138, Evalue=9e-33, Organism=Homo sapiens, GI187761343, Length=531, Percent_Identity=25.4237288135593, Blast_Score=138, Evalue=9e-33, Organism=Homo sapiens, GI227499619, Length=531, Percent_Identity=23.5404896421846, Blast_Score=107, Evalue=4e-23, Organism=Homo sapiens, GI13375727, Length=531, Percent_Identity=20.9039548022599, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI38524616, Length=442, Percent_Identity=23.5294117647059, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI195947378, Length=401, Percent_Identity=23.9401496259352, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI40807357, Length=489, Percent_Identity=23.1083844580777, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI27477105, Length=351, Percent_Identity=23.9316239316239, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI8923896, Length=557, Percent_Identity=21.7235188509874, Blast_Score=75, Evalue=1e-13, Organism=Escherichia coli, GI1788107, Length=525, Percent_Identity=27.8095238095238, Blast_Score=191, Evalue=8e-50, Organism=Escherichia coli, GI145693145, Length=513, Percent_Identity=28.0701754385965, Blast_Score=189, Evalue=3e-49, Organism=Escherichia coli, GI221142682, Length=478, Percent_Identity=26.3598326359833, Blast_Score=170, Evalue=2e-43, Organism=Escherichia coli, GI1786810, Length=505, Percent_Identity=25.1485148514851, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI1789201, Length=505, Percent_Identity=24.950495049505, Blast_Score=118, Evalue=9e-28, Organism=Escherichia coli, GI1786801, Length=431, Percent_Identity=23.4338747099768, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1788595, Length=473, Percent_Identity=22.4101479915433, Blast_Score=100, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17558820, Length=495, Percent_Identity=30.1010101010101, Blast_Score=214, Evalue=1e-55, Organism=Caenorhabditis elegans, GI32563687, Length=488, Percent_Identity=30.1229508196721, Blast_Score=199, Evalue=4e-51, Organism=Caenorhabditis elegans, GI71994694, Length=539, Percent_Identity=25.7884972170686, Blast_Score=159, Evalue=4e-39, Organism=Caenorhabditis elegans, GI71994703, Length=539, Percent_Identity=25.7884972170686, Blast_Score=159, Evalue=4e-39, Organism=Caenorhabditis elegans, GI71994690, Length=539, Percent_Identity=25.7884972170686, Blast_Score=159, Evalue=4e-39, Organism=Caenorhabditis elegans, GI17560308, Length=519, Percent_Identity=26.2042389210019, Blast_Score=145, Evalue=7e-35, Organism=Caenorhabditis elegans, GI17531443, Length=469, Percent_Identity=26.0127931769723, Blast_Score=142, Evalue=5e-34, Organism=Caenorhabditis elegans, GI17559526, Length=474, Percent_Identity=24.8945147679325, Blast_Score=134, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17560140, Length=480, Percent_Identity=22.0833333333333, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71996755, Length=474, Percent_Identity=25.5274261603376, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17538037, Length=530, Percent_Identity=24.1509433962264, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI115534440, Length=505, Percent_Identity=22.5742574257426, Blast_Score=106, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17557194, Length=505, Percent_Identity=23.5643564356436, Blast_Score=101, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17551278, Length=532, Percent_Identity=23.6842105263158, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17553312, Length=568, Percent_Identity=22.7112676056338, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17507435, Length=532, Percent_Identity=20.8646616541353, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17556356, Length=358, Percent_Identity=25.1396648044693, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71985884, Length=388, Percent_Identity=24.2268041237113, Blast_Score=79, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6319699, Length=402, Percent_Identity=29.1044776119403, Blast_Score=157, Evalue=4e-39, Organism=Saccharomyces cerevisiae, GI6319264, Length=553, Percent_Identity=25.497287522604, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI24581924, Length=537, Percent_Identity=25.6983240223464, Blast_Score=155, Evalue=6e-38, Organism=Drosophila melanogaster, GI21356441, Length=462, Percent_Identity=24.4588744588745, Blast_Score=135, Evalue=8e-32, Organism=Drosophila melanogaster, GI24648253, Length=458, Percent_Identity=24.8908296943231, Blast_Score=133, Evalue=2e-31, Organism=Drosophila melanogaster, GI24648255, Length=456, Percent_Identity=25, Blast_Score=132, Evalue=6e-31, Organism=Drosophila melanogaster, GI18859661, Length=498, Percent_Identity=25.7028112449799, Blast_Score=132, Evalue=8e-31, Organism=Drosophila melanogaster, GI24653035, Length=487, Percent_Identity=23.8193018480493, Blast_Score=123, Evalue=3e-28, Organism=Drosophila melanogaster, GI21358303, Length=467, Percent_Identity=24.6252676659529, Blast_Score=123, Evalue=3e-28, Organism=Drosophila melanogaster, GI20130357, Length=443, Percent_Identity=23.7020316027088, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI21356947, Length=474, Percent_Identity=24.0506329113924, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI21355181, Length=510, Percent_Identity=23.5294117647059, Blast_Score=120, Evalue=2e-27, Organism=Drosophila melanogaster, GI24648257, Length=460, Percent_Identity=24.5652173913043, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI24648260, Length=441, Percent_Identity=25.3968253968254, Blast_Score=119, Evalue=4e-27, Organism=Drosophila melanogaster, GI281365686, Length=453, Percent_Identity=24.0618101545254, Blast_Score=118, Evalue=9e-27, Organism=Drosophila melanogaster, GI161076582, Length=461, Percent_Identity=23.644251626898, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI24656500, Length=443, Percent_Identity=22.5733634311512, Blast_Score=102, Evalue=5e-22, Organism=Drosophila melanogaster, GI24648676, Length=513, Percent_Identity=23.7816764132554, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI45550496, Length=527, Percent_Identity=22.5806451612903, Blast_Score=99, Evalue=5e-21, Organism=Drosophila melanogaster, GI45552801, Length=527, Percent_Identity=22.5806451612903, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI24583465, Length=525, Percent_Identity=23.6190476190476, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI24583463, Length=525, Percent_Identity=23.6190476190476, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI281364798, Length=525, Percent_Identity=23.6190476190476, Blast_Score=99, Evalue=8e-21, Organism=Drosophila melanogaster, GI62472339, Length=533, Percent_Identity=21.9512195121951, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI24667955, Length=533, Percent_Identity=21.9512195121951, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI19922652, Length=455, Percent_Identity=20.8791208791209, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI21355225, Length=461, Percent_Identity=22.5596529284165, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI20130353, Length=509, Percent_Identity=21.2180746561886, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI28573631, Length=509, Percent_Identity=21.2180746561886, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24667959, Length=374, Percent_Identity=22.9946524064171, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020459 - InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.3 [H]
Molecular weight: Translated: 56208; Mature: 56208
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFDWIKTRSDFDDDKPAVIDHAKQTSWTYQQLNARADNMAHYLTSQGVKKGDVIGIFAP CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECC NDIAILDLLFACFKTGAVFLPLNWRLNPKEIAAIVEDAQLKLLFYAEKHLSSLTDIDQNL CCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHHH LHMDIDVAQYDEIVNPDYHQPFQATPVEPQDLAALIYTSGTTGSPKGVMFSYESFVHNGA EEEECCHHHHHHHCCCCCCCCCCCCCCCHHHCEEEEEECCCCCCCCCEEEEEHHHHCCCC NLELTYKFNSNYITIVSTPMFHVLGFNDTVLPVLMSGGTLILQRYFNGEELNDMIAQYHP CEEEEEEECCCEEEEEECCEEEEECCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHCC TFIIMIPTMYYSTLRASNFNPENFRAMDYIIQGGSQPLPSIQAAFKQYGINIINGYGLTE EEEEEECHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCC APLVLVNTPENSKRKPMSIGKAVMFVDARILDDNGEEVPTGEIGELAIKAKNVTPGYWNK CCEEEEECCCCCCCCCHHHCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCC PAETAKAFHGRYLLTGDLAKMDDDGDIFIIDRKKELIITGGENVLPSEVENALAEHPLVD CHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCC RCVVVGYDHPKYGESIAAAIILREDEPHYAEILDQHMRSRLAGYKVPRMYVPVTHMPLNS EEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC TQKPDKLAIRQMMNDKVSQTL CCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNFDWIKTRSDFDDDKPAVIDHAKQTSWTYQQLNARADNMAHYLTSQGVKKGDVIGIFAP CCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEECC NDIAILDLLFACFKTGAVFLPLNWRLNPKEIAAIVEDAQLKLLFYAEKHLSSLTDIDQNL CCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCEEEEEEEEHHHHHHHHHHHHHH LHMDIDVAQYDEIVNPDYHQPFQATPVEPQDLAALIYTSGTTGSPKGVMFSYESFVHNGA EEEECCHHHHHHHCCCCCCCCCCCCCCCHHHCEEEEEECCCCCCCCCEEEEEHHHHCCCC NLELTYKFNSNYITIVSTPMFHVLGFNDTVLPVLMSGGTLILQRYFNGEELNDMIAQYHP CEEEEEEECCCEEEEEECCEEEEECCCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHCC TFIIMIPTMYYSTLRASNFNPENFRAMDYIIQGGSQPLPSIQAAFKQYGINIINGYGLTE EEEEEECHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCCCCC APLVLVNTPENSKRKPMSIGKAVMFVDARILDDNGEEVPTGEIGELAIKAKNVTPGYWNK CCEEEEECCCCCCCCCHHHCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCC PAETAKAFHGRYLLTGDLAKMDDDGDIFIIDRKKELIITGGENVLPSEVENALAEHPLVD CHHHHHHHCCCEEEECCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCC RCVVVGYDHPKYGESIAAAIILREDEPHYAEILDQHMRSRLAGYKVPRMYVPVTHMPLNS EEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC TQKPDKLAIRQMMNDKVSQTL CCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]