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The map label for this gene is ypdA [C]

Identifier: 148266648

GI number: 148266648

Start: 249539

End: 251095

Strand: Reverse

Name: ypdA [C]

Synonym: SaurJH9_0208

Alternate gene names: 148266648

Gene position: 251095-249539 (Counterclockwise)

Preceding gene: 148266649

Following gene: 148266647

Centisome position: 8.64

GC content: 32.88

Gene sequence:

>1557_bases
ATGACGGCATACAAACCTTATAGACATCAATTGAGACGATCGTTATTTGCGTCTACTATTTTTCCAGTATTTTTAGTCAT
TATTATTGGACTAGTAAGCTTCTATGCCATCTATATTTGGATTGAGCATCGTACGATTCATCAACATGTTGATGAAAGTC
AGTCATCTTTACATCACACTGAAAAGCAGATTCAGACATTTATTACACAGCATAATAATTCGTTTCAAGAGCTCGATTTA
ACAAATCATCATGATGTTACCGCTACAAAACGTGAATTATTAAAATTAATACACCAACAGCCCGCAACACTTTATTATGA
ATTATCTGGACCAAATCAGTTTATAACCAATAATTATGAACATTTAAACACTAAAAATATGTATTTATTTTCAACGCATC
AGCTTAAATTCAATAATAGTACATATATGCTTAAAATTTATATGGCTAACACCCCACGTTTAAGTGAAATTAAGAAAGAT
AGCCGACAATTCGCACTTATCGTTGATCAATATGACAATATTTTATACGCCAACGATGACCGTTTTACTATAGGTGAAAA
GTATAGACCGCAACAATTCGGATTTATGAATGAATCTGTAAAATTAAACCATGCTGACCATCGTCTCATTATTTATAAAG
ATATACATGAAAACATTGAAGATGGTATCACGTTGTTAATTGTTATGGCCGTAGTTCTTGTTTTACTAGTAATATTTGGT
TTCATTAGCGCAGATAATATGGCTAAACGACAAACAAAAGATATCGAAACGATTATTCAAAAAATTTACTATGCCAAAAA
TCGTCATCTAGGTACATATACGCCTTTAAAAAACAACAGTGAACTAGAAGAAATTAATAATTATATTTACGATTTATTTG
AATCAAATGAGCAACTGATCCATTCTATCGAGCATACAGAACGTCGCTTGCGTGATATTCAGTTAAAGGAAATAGAACGC
CAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAAC
TGTGGTCCAACAATTATCGCAAATGTTACGTTACTCATTACGTACAAACTCACATACAGTGGAATTAAACGAAGAGTTGA
ACTACATTGAACAGTATGTTGCAATACAAAACATCCGTTTTGATGACATGATTAAGCTCCATATTGAAAGTTCTGAAGAA
GCGCGTCACCAGACAATTGGTAAAATGATGCTTCAGCCACTCATAGAAAATGCTATTAAACATGGTAGAGATACTGAGTC
ATTGGACATTACTATACGCCTGACATTGGCACGTCAGAATTTACATGTTTTAGTTTGCGACAATGGTATCGGGATGTCGT
CATCTCGCCTGCAATATGTACGCCAATCTCTTAATAATGATGTATTTGATACTAAGCATTTGGGATTAAATCATTTACAC
AATAAAGCAATGATTCAATATGGTTCACATGCACGACTTCATATTTTTTCAAAGCGTAATCAAGGTACGTTAATTTGTTA
TAAAATACCACTTTCAAGGGGGAATGTAGATGTTTAA

Upstream 100 bases:

>100_bases
AACAAAGCGATCAGTCTATCGAAAATCTTAAGAACATACCTTTAATACCGAAATCTAAATTACCGGACATTCCACATCAT
AAATTTTTGGAGATGATTCA

Downstream 100 bases:

>100_bases
GGTAGTTATTTGTGATGATGAACGAATTATTCGAGAAGGTTTAAAGCAAATCATTCCTTGGGGAGACTATCATTTCAATA
CAATATACACTGCTAAAGAT

Product: histidine kinase internal region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MTAYKPYRHQLRRSLFASTIFPVFLVIIIGLVSFYAIYIWIEHRTIHQHVDESQSSLHHTEKQIQTFITQHNNSFQELDL
TNHHDVTATKRELLKLIHQQPATLYYELSGPNQFITNNYEHLNTKNMYLFSTHQLKFNNSTYMLKIYMANTPRLSEIKKD
SRQFALIVDQYDNILYANDDRFTIGEKYRPQQFGFMNESVKLNHADHRLIIYKDIHENIEDGITLLIVMAVVLVLLVIFG
FISADNMAKRQTKDIETIIQKIYYAKNRHLGTYTPLKNNSELEEINNYIYDLFESNEQLIHSIEHTERRLRDIQLKEIER
QFQPHFLFNTMQTIQYLITLSPKLAQTVVQQLSQMLRYSLRTNSHTVELNEELNYIEQYVAIQNIRFDDMIKLHIESSEE
ARHQTIGKMMLQPLIENAIKHGRDTESLDITIRLTLARQNLHVLVCDNGIGMSSSRLQYVRQSLNNDVFDTKHLGLNHLH
NKAMIQYGSHARLHIFSKRNQGTLICYKIPLSRGNVDV

Sequences:

>Translated_518_residues
MTAYKPYRHQLRRSLFASTIFPVFLVIIIGLVSFYAIYIWIEHRTIHQHVDESQSSLHHTEKQIQTFITQHNNSFQELDL
TNHHDVTATKRELLKLIHQQPATLYYELSGPNQFITNNYEHLNTKNMYLFSTHQLKFNNSTYMLKIYMANTPRLSEIKKD
SRQFALIVDQYDNILYANDDRFTIGEKYRPQQFGFMNESVKLNHADHRLIIYKDIHENIEDGITLLIVMAVVLVLLVIFG
FISADNMAKRQTKDIETIIQKIYYAKNRHLGTYTPLKNNSELEEINNYIYDLFESNEQLIHSIEHTERRLRDIQLKEIER
QFQPHFLFNTMQTIQYLITLSPKLAQTVVQQLSQMLRYSLRTNSHTVELNEELNYIEQYVAIQNIRFDDMIKLHIESSEE
ARHQTIGKMMLQPLIENAIKHGRDTESLDITIRLTLARQNLHVLVCDNGIGMSSSRLQYVRQSLNNDVFDTKHLGLNHLH
NKAMIQYGSHARLHIFSKRNQGTLICYKIPLSRGNVDV
>Mature_517_residues
TAYKPYRHQLRRSLFASTIFPVFLVIIIGLVSFYAIYIWIEHRTIHQHVDESQSSLHHTEKQIQTFITQHNNSFQELDLT
NHHDVTATKRELLKLIHQQPATLYYELSGPNQFITNNYEHLNTKNMYLFSTHQLKFNNSTYMLKIYMANTPRLSEIKKDS
RQFALIVDQYDNILYANDDRFTIGEKYRPQQFGFMNESVKLNHADHRLIIYKDIHENIEDGITLLIVMAVVLVLLVIFGF
ISADNMAKRQTKDIETIIQKIYYAKNRHLGTYTPLKNNSELEEINNYIYDLFESNEQLIHSIEHTERRLRDIQLKEIERQ
FQPHFLFNTMQTIQYLITLSPKLAQTVVQQLSQMLRYSLRTNSHTVELNEELNYIEQYVAIQNIRFDDMIKLHIESSEEA
RHQTIGKMMLQPLIENAIKHGRDTESLDITIRLTLARQNLHVLVCDNGIGMSSSRLQYVRQSLNNDVFDTKHLGLNHLHN
KAMIQYGSHARLHIFSKRNQGTLICYKIPLSRGNVDV

Specific function: Probable member of the two-component regulatory system SAB0162c/SAB0161c. May activate SAB0161c by phosphorylation [H]

COG id: COG2972

COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788723, Length=206, Percent_Identity=30.0970873786408, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788446, Length=256, Percent_Identity=26.953125, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR010559 [H]

Pfam domain/function: PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 61007; Mature: 60876

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAYKPYRHQLRRSLFASTIFPVFLVIIIGLVSFYAIYIWIEHRTIHQHVDESQSSLHHT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHH
EKQIQTFITQHNNSFQELDLTNHHDVTATKRELLKLIHQQPATLYYELSGPNQFITNNYE
HHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCCCC
HLNTKNMYLFSTHQLKFNNSTYMLKIYMANTPRLSEIKKDSRQFALIVDQYDNILYANDD
CCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCHHHHHHCCCEEEEEEECCCCEEEECCC
RFTIGEKYRPQQFGFMNESVKLNHADHRLIIYKDIHENIEDGITLLIVMAVVLVLLVIFG
CEECCCCCCCHHCCCCCCCEEEECCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FISADNMAKRQTKDIETIIQKIYYAKNRHLGTYTPLKNNSELEEINNYIYDLFESNEQLI
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
HSIEHTERRLRDIQLKEIERQFQPHFLFNTMQTIQYLITLSPKLAQTVVQQLSQMLRYSL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RTNSHTVELNEELNYIEQYVAIQNIRFDDMIKLHIESSEEARHQTIGKMMLQPLIENAIK
CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
HGRDTESLDITIRLTLARQNLHVLVCDNGIGMSSSRLQYVRQSLNNDVFDTKHLGLNHLH
CCCCCCCEEEEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHCCHHHHC
NKAMIQYGSHARLHIFSKRNQGTLICYKIPLSRGNVDV
CHHHHEECCCCEEEEEECCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure 
TAYKPYRHQLRRSLFASTIFPVFLVIIIGLVSFYAIYIWIEHRTIHQHVDESQSSLHHT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHHH
EKQIQTFITQHNNSFQELDLTNHHDVTATKRELLKLIHQQPATLYYELSGPNQFITNNYE
HHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCCCC
HLNTKNMYLFSTHQLKFNNSTYMLKIYMANTPRLSEIKKDSRQFALIVDQYDNILYANDD
CCCCCCEEEEEEEEEEECCCEEEEEEEEECCCCHHHHHHCCCEEEEEEECCCCEEEECCC
RFTIGEKYRPQQFGFMNESVKLNHADHRLIIYKDIHENIEDGITLLIVMAVVLVLLVIFG
CEECCCCCCCHHCCCCCCCEEEECCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FISADNMAKRQTKDIETIIQKIYYAKNRHLGTYTPLKNNSELEEINNYIYDLFESNEQLI
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHH
HSIEHTERRLRDIQLKEIERQFQPHFLFNTMQTIQYLITLSPKLAQTVVQQLSQMLRYSL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RTNSHTVELNEELNYIEQYVAIQNIRFDDMIKLHIESSEEARHQTIGKMMLQPLIENAIK
CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
HGRDTESLDITIRLTLARQNLHVLVCDNGIGMSSSRLQYVRQSLNNDVFDTKHLGLNHLH
CCCCCCCEEEEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHCCHHHHC
NKAMIQYGSHARLHIFSKRNQGTLICYKIPLSRGNVDV
CHHHHEECCCCEEEEEECCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA