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The map label for this gene is citD

Identifier: 147673924

GI number: 147673924

Start: 345010

End: 345306

Strand: Direct

Name: citD

Synonym: VC0395_A0324

Alternate gene names: 147673924

Gene position: 345010-345306 (Clockwise)

Preceding gene: 147674487

Following gene: 147673483

Centisome position: 11.41

GC content: 53.54

Gene sequence:

>297_bases
ATGAAAATTGCCCATCCCGCCTTTGCGGGAACACTGGAATCCAGTGATCTTCAGGTTCGGATTGAACCCAATAACGATGG
CGGTATTGAACTGGTGTTAGACAGTACCGTCGAGCAGCGATTTGGTCATGCGATTCGTCAGGTCGTGCTGCACACCCTCG
ATGCGATGCAAGTGCATGATGCGCTGGTCACCATCGAAGACAAAGGTGCGCTGGATTGTGTGATCCGCGCGCGCGTACAG
GCGGCGGTGATGCGCGCTTGTGATGTTCAGAACATTGAGTGGAGTCAGCTATCATGA

Upstream 100 bases:

>100_bases
CTATGCGGAACATTCGCTACAGACCGCACCGCAACGGTTAGCGGTATGAGCGCGGTGCTGACACTGTTTTATCCAATAAC
TCATTAACAAGGTTGTACCC

Downstream 100 bases:

>100_bases
CCAAACTTCGTCGCAGTATGTTATTTGTGCCGGGCGCGAATGCCGCCATGCTCAGTAATACCTTTATCTATCAACCGGAT
TCGATCATGTTCGATCTGGA

Product: citrate lyase subunit gamma

Products: acetate; oxaloacetate

Alternate protein names: Citrate lyase gamma chain

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQRFGHAIRQVVLHTLDAMQVHDALVTIEDKGALDCVIRARVQ
AAVMRACDVQNIEWSQLS

Sequences:

>Translated_98_residues
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQRFGHAIRQVVLHTLDAMQVHDALVTIEDKGALDCVIRARVQ
AAVMRACDVQNIEWSQLS
>Mature_98_residues
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQRFGHAIRQVVLHTLDAMQVHDALVTIEDKGALDCVIRARVQ
AAVMRACDVQNIEWSQLS

Specific function: Covalent carrier of the coenzyme of citrate lyase

COG id: COG3052

COG function: function code C; Citrate lyase, gamma subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitD family

Homologues:

Organism=Escherichia coli, GI1786834, Length=94, Percent_Identity=44.6808510638298, Blast_Score=89, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CITD_VIBC3 (A5F3C2)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- STRING:   A5F3C2
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0324
- eggNOG:   COG3052
- HOGENOM:   HBG359308
- OMA:   LAGTFES
- ProtClustDB:   PRK13253
- BioCyc:   VCHO345073:VC0395_A0324-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00805
- InterPro:   IPR006495
- InterPro:   IPR009662
- PIRSF:   PIRSF002736
- ProDom:   PD015389
- TIGRFAMs:   TIGR01608

Pfam domain/function: PF06857 MdcD

EC number: 4.1.3.6

Molecular weight: Translated: 10777; Mature: 10777

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQRFGHAIRQVVLHTLDAMQVHD
CCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ALVTIEDKGALDCVIRARVQAAVMRACDVQNIEWSQLS
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKIAHPAFAGTLESSDLQVRIEPNNDGGIELVLDSTVEQRFGHAIRQVVLHTLDAMQVHD
CCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
ALVTIEDKGALDCVIRARVQAAVMRACDVQNIEWSQLS
EEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA