| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is secA [H]
Identifier: 147673246
GI number: 147673246
Start: 2113622
End: 2116333
Strand: Reverse
Name: secA [H]
Synonym: VC0395_A1972
Alternate gene names: 147673246
Gene position: 2116333-2113622 (Counterclockwise)
Preceding gene: 147675593
Following gene: 147674265
Centisome position: 69.98
GC content: 48.97
Gene sequence:
>2712_bases ATGATAACTAAGCTACTGACAAAGGTGATTGGCAGTCGCAATGACCGCACACTGCGCCGTTTACGCAAGATTGTAAAAGA GATTAATAACTACGAACCCGCCTTTGAAGCCCTCTCCGATGAAGAGCTAAAAGCGAAAACTGTCGAGTTCCGTCAACGCA TTGAACAGGGCGAAAACCTTGATCAACTGTTGCCAGAAGCTTTTGCCACCGTGCGCGAAGCTTCTAAGCGTGTGTTCGGC ATGCGCCATTTTGATGTACAGCTGATTGGCGGTATGGTGCTGCATGGCGGTCAAATCGCTGAGATGCGTACGGGTGAAGG TAAAACGCTAACCGCAACGCTGGCTGCTTACCTGAATGCCCTACCTGGCAAAGGCGTACACATTGTTACGGTCAACGACT ACTTGGCCAAACGTGACGCAGAAACCAACCGACCACTCTTCGAATTCTTAGGCATGACCGTGGGTGTGAATATTCCCAAC ATGCCGCAGCCTGCTAAAAAAGAGGCTTACCAAGCCGACATCCTGTACGGCACCAACAACGAATTTGGTTTTGACTACCT GCGCGATAACATGGCGTTTCGCCCTGAAGATCGCGTGCAACGTGCTCGCTTCTTTGCTGTGGTCGATGAAGTGGACTCAA TCTTAATCGATGAAGCACGTACCCCGCTGATTATCTCAGGTCCTGCGGAAGACAGTTCGGATCTCTACATCCGTATCAAC AAGTTGATCCCGCTACTGCAAAAGCAAGATAAAGAAGATTCGGAAGAGTACCGCGGTGACGGTCACTTCACCGTGGATGA AAAATCTAAGCAGGTGCATCTGACCGAAACGGGTCAAGAGTTCGTTGAAGAGCTGCTAGTGAAAAACGGCATGATGCAAG AGGGTGATACGCTTTACTCTCCCGCTAACATTAGCTTGCTGCACCACGTTAACGCGGCATTACGTGCGCATGTTCTGTTT GAAAAGAACGTCGATTACATCGTGACACCCGATGGTGAAGTGGTGATCGTTGATGAACATACCGGTCGTACTATGCCGGG TCGTCGCTGGTCTGATGGTCTGCACCAAGCGGTAGAAGCAAAAGAAGGGGTGAAGATCCAGAACGAAAACCAAACTCTGG CTTCGATCACTTTCCAAAACTACTTCCGTCTGTATGAAAAGCTGTCTGGTATGACGGGTACCGCTGATACCGAAGCGTTT GAATTCCAACAAATTTATGGTTTGGAAACAGTTGTTATTCCAACCAACAAGCCGATGGTGCGTAACGATATGCCGGATGT GGTGTATCGCTCTGAGGCGGAAAAGTTTGCCGCGATCATTGAAGATATCAAACAGCGTGTTGAGAAAGGTCAACCTGTGT TGGTGGGTACGGTTTCGATTGAGAAATCAGAATTGCTCTCCAATGCACTGAAAAAAGCAGGCATCAAGCACAATGTTCTG AACGCGAAGTTCCATGAAAAAGAAGCGGAAATTGTTGCTGAAGCCGGTAAACCTGGCGCAGTCACCATCGCAACTAACAT GGCGGGTCGTGGTACGGATATCGTATTGGGTGGCAGCTGGCAAGCCAAAGTGGAGAAGCTGGACAACCCAACCCAAGAGC AAATTGATGCGATTAAAGCTGAGTGGAAGCAAGTGCACGATCAAGTGTTGCAAGCGGGCGGCCTACACATCATTGGTACT GAGCGTCACGAATCTCGCCGTATCGATAACCAGCTACGTGGTCGTTCTGGTCGTCAAGGTGATGCGGGTTCATCGCGTTT CTATCTCTCAATGGAAGATACTTTACTGCGTATTTTCACCTCTGATCGTATGGCGGCATTGATCCAAAGCGGTATGGATG AAGGCGAAGCGATTGAGTCAAAAATGCTCTCTCGCTCGATTGAAAAAGCGCAGCGTAAAGTAGAAGGCCGTAACTTCGAC ATTCGTAAACAGTTGCTGGAATACGATGACGTAGCGAACGATCAGCGTAAAGTCGTTTACGAACTGCGTGATGAACTGAT GAGCGCAGATGACATCAGCGACATGATCGCGCAAAACCGTGAAGATGTGCTGAACGCGGTGATGGATGAGTACATTCCGC CACAATCTCTGGAAGATATGTGGGATATCAAAGGGTTGGAAGATCGCCTAAAGAACGATTTCGATCTACCACTACCGATC CAATCTTGGTTAGATGCTGACAACAAGCTGTATGAAGAAGCGCTACGTGAGCGCATCATCGAGCAAGCGGTTGAGGTTTA TAAAGCCAAAGAGCAAGCGGTTAGCCCTGCGGTGATGCGTAACTTTGAAAAATCTGTGATGCTGCAAACGCTAGATACAC TGTGGAAAGAGCATCTGGCGGCGATGGATCACTTGCGTCAAGGTATTCATCTACGTGGTTACGCACAGAAAAACCCGAAA CAAGAGTACAAGCGCGAGTCGTTTGAACTGTTTGAAGATCTGCTTGAGTCACTCAAATCGGATGTGATCACTGTCTTGTC CAAAGTCCGTGTTCAGCAGCAAGAAGAAGTGGAGCGTATGGAAGCTCAACGCCGCGCGCAAGCTGAAGAAGCGGCGCGTC ATGCACAAGCGCAACACGCGAGTGCTGATGATGCTGAGCAAGACGAGTCGAACCAGCCAATGGTGCGTGATGAACGCAAA GTGGGCCGTAACGAACCTTGTCCATGCGGTAGCGGTAAAAAATACAAACAGTGTCACGGGCAAATTAACTAA
Upstream 100 bases:
>100_bases ACAGATGACTTATCTCAGTATCCTTAGTTGAAAATAGGTAGAGACTAAAGACATTCCAAGGTCGATAGACAGCGATTTAG CACAGAGAGATTCACAACAA
Downstream 100 bases:
>100_bases GCCAGTTTCACCTTATTAAATAAAAGAGTCGCTAAGGCGACTCTTTTTATACCCAAACAACTTGAAGTTACAGCCAACAC CGCTGTGGCTTTGAGTAGGA
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 903; Mature: 903
Protein sequence:
>903_residues MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENLDQLLPEAFATVREASKRVFG MRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNALPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPN MPQPAKKEAYQADILYGTNNEFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRIN KLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYSPANISLLHHVNAALRAHVLF EKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEAKEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAF EFQQIYGLETVVIPTNKPMVRNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIKHNVL NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVEKLDNPTQEQIDAIKAEWKQVHDQVLQAGGLHIIGT ERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDTLLRIFTSDRMAALIQSGMDEGEAIESKMLSRSIEKAQRKVEGRNFD IRKQLLEYDDVANDQRKVVYELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLPI QSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLDTLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFEDLLESLKSDVITVLSKVRVQQQEEVERMEAQRRAQAEEAARHAQAQHASADDAEQDESNQPMVRDERK VGRNEPCPCGSGKKYKQCHGQIN
Sequences:
>Translated_903_residues MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENLDQLLPEAFATVREASKRVFG MRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNALPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPN MPQPAKKEAYQADILYGTNNEFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRIN KLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYSPANISLLHHVNAALRAHVLF EKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEAKEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAF EFQQIYGLETVVIPTNKPMVRNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIKHNVL NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVEKLDNPTQEQIDAIKAEWKQVHDQVLQAGGLHIIGT ERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDTLLRIFTSDRMAALIQSGMDEGEAIESKMLSRSIEKAQRKVEGRNFD IRKQLLEYDDVANDQRKVVYELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLPI QSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLDTLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFEDLLESLKSDVITVLSKVRVQQQEEVERMEAQRRAQAEEAARHAQAQHASADDAEQDESNQPMVRDERK VGRNEPCPCGSGKKYKQCHGQIN >Mature_903_residues MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENLDQLLPEAFATVREASKRVFG MRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNALPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPN MPQPAKKEAYQADILYGTNNEFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRIN KLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYSPANISLLHHVNAALRAHVLF EKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEAKEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAF EFQQIYGLETVVIPTNKPMVRNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIKHNVL NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVEKLDNPTQEQIDAIKAEWKQVHDQVLQAGGLHIIGT ERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDTLLRIFTSDRMAALIQSGMDEGEAIESKMLSRSIEKAQRKVEGRNFD IRKQLLEYDDVANDQRKVVYELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLPI QSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLDTLWKEHLAAMDHLRQGIHLRGYAQKNPK QEYKRESFELFEDLLESLKSDVITVLSKVRVQQQEEVERMEAQRRAQAEEAARHAQAQHASADDAEQDESNQPMVRDERK VGRNEPCPCGSGKKYKQCHGQIN
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=903, Percent_Identity=72.8682170542636, Blast_Score=1373, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 102471; Mature: 102471
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENL CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCH DQLLPEAFATVREASKRVFGMRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHC LPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPNMPQPAKKEAYQADILYGTNN CCCCCEEEEEECHHHHHCCCCCCCHHHHHHCHHCCCCCCCCCCHHHHHHHEEEEEEECCC EFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRIN CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHH KLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYS HHHHHHHHCCCCHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCEEC PANISLLHHVNAALRAHVLFEKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEA CCCHHHHHHHHHHHHHHHHEECCCCEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQQIYGLETVVIPTNKPMV HCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCH RNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIKHNVL HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCC NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVEKLDNPTQEQIDAIKA CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHCCCCCHHHHHHHHH EWKQVHDQVLQAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDTLLRIFT HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHH SDRMAALIQSGMDEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVANDQRKVVY HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH ELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLPI HHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHCCCCCCCCCH QSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLDTLWKEHLA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFEDLLESLKSDVITVLSKVRVQQQEEVERM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAQRRAQAEEAARHAQAQHASADDAEQDESNQPMVRDERKVGRNEPCPCGSGKKYKQCHG HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHCC QIN CCC >Mature Secondary Structure MITKLLTKVIGSRNDRTLRRLRKIVKEINNYEPAFEALSDEELKAKTVEFRQRIEQGENL CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCH DQLLPEAFATVREASKRVFGMRHFDVQLIGGMVLHGGQIAEMRTGEGKTLTATLAAYLNA HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHC LPGKGVHIVTVNDYLAKRDAETNRPLFEFLGMTVGVNIPNMPQPAKKEAYQADILYGTNN CCCCCEEEEEECHHHHHCCCCCCCHHHHHHCHHCCCCCCCCCCHHHHHHHEEEEEEECCC EFGFDYLRDNMAFRPEDRVQRARFFAVVDEVDSILIDEARTPLIISGPAEDSSDLYIRIN CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEHH KLIPLLQKQDKEDSEEYRGDGHFTVDEKSKQVHLTETGQEFVEELLVKNGMMQEGDTLYS HHHHHHHHCCCCHHHHHCCCCCEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCEEC PANISLLHHVNAALRAHVLFEKNVDYIVTPDGEVVIVDEHTGRTMPGRRWSDGLHQAVEA CCCHHHHHHHHHHHHHHHHEECCCCEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH KEGVKIQNENQTLASITFQNYFRLYEKLSGMTGTADTEAFEFQQIYGLETVVIPTNKPMV HCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCH RNDMPDVVYRSEAEKFAAIIEDIKQRVEKGQPVLVGTVSIEKSELLSNALKKAGIKHNVL HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCC NAKFHEKEAEIVAEAGKPGAVTIATNMAGRGTDIVLGGSWQAKVEKLDNPTQEQIDAIKA CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCHHHHHHHCCCCCHHHHHHHHH EWKQVHDQVLQAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDTLLRIFT HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHH SDRMAALIQSGMDEGEAIESKMLSRSIEKAQRKVEGRNFDIRKQLLEYDDVANDQRKVVY HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHH ELRDELMSADDISDMIAQNREDVLNAVMDEYIPPQSLEDMWDIKGLEDRLKNDFDLPLPI HHHHHHHCCCHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHCCCCCCCCCH QSWLDADNKLYEEALRERIIEQAVEVYKAKEQAVSPAVMRNFEKSVMLQTLDTLWKEHLA HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH AMDHLRQGIHLRGYAQKNPKQEYKRESFELFEDLLESLKSDVITVLSKVRVQQQEEVERM HHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EAQRRAQAEEAARHAQAQHASADDAEQDESNQPMVRDERKVGRNEPCPCGSGKKYKQCHG HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHCC QIN CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA