Click here to switch to the map view.

The map label for this gene is rbfA [H]

Identifier: 147673152

GI number: 147673152

Start: 178910

End: 179320

Strand: Direct

Name: rbfA [H]

Synonym: VC0395_A0175

Alternate gene names: 147673152

Gene position: 178910-179320 (Clockwise)

Preceding gene: 147675225

Following gene: 147675140

Centisome position: 5.92

GC content: 48.66

Gene sequence:

>411_bases
GTGAGAAACGATATGCCGAAAGAATTTAGCCGTACACAACGTGTGGCACAGCAATTACAAAAAGAACTGGCGATGATCCT
GCAACGCGAAGTGCGTGATTCTCGCCTAGGTATGGTGACCATCTCTGATGTAGAAGTATCACGCGATTTGGCTTATGCCA
AAGTGTTCGTGACCTTTCTGTGCATCGGTGAGCAAACCCCAGAATCTTGTCTGGCAGCATTGCGTGAGCACGAAGTGCAG
ATCCGCATGATGTTAGGTAAGCAGATCCGCTTACGTTTGACGCCAGAAATTCGCTTCTACTACGACAACACCTTGGTTGA
AGGTATGCGTATGTCAAACCTCGTTACCGAAGTGATCAATAGTGACAAGCGCCGCAAGCATGAAGCGGGTCGTGATGAGG
ACGAAGCGTAA

Upstream 100 bases:

>100_bases
CCATCGACTAATCAACTACTGTTGCATTAATCAAGGCAATATAGGTTGTTGAATACACCATGGGGGGCTGGCCAAGACCA
TCCCCCCATTCTTTCTATCA

Downstream 100 bases:

>100_bases
TGGTTCGTCGACGTAAAGGTCGGGTTATCCACGGTGTGATTCTGTTGGATAAGCCGACAGGTATCTCTTCCAACGACGCT
TTGCAAAAGGTTAAACGCCT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MRNDMPKEFSRTQRVAQQLQKELAMILQREVRDSRLGMVTISDVEVSRDLAYAKVFVTFLCIGEQTPESCLAALREHEVQ
IRMMLGKQIRLRLTPEIRFYYDNTLVEGMRMSNLVTEVINSDKRRKHEAGRDEDEA

Sequences:

>Translated_136_residues
MRNDMPKEFSRTQRVAQQLQKELAMILQREVRDSRLGMVTISDVEVSRDLAYAKVFVTFLCIGEQTPESCLAALREHEVQ
IRMMLGKQIRLRLTPEIRFYYDNTLVEGMRMSNLVTEVINSDKRRKHEAGRDEDEA
>Mature_136_residues
MRNDMPKEFSRTQRVAQQLQKELAMILQREVRDSRLGMVTISDVEVSRDLAYAKVFVTFLCIGEQTPESCLAALREHEVQ
IRMMLGKQIRLRLTPEIRFYYDNTLVEGMRMSNLVTEVINSDKRRKHEAGRDEDEA

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=124, Percent_Identity=59.6774193548387, Blast_Score=146, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15921; Mature: 15921

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNDMPKEFSRTQRVAQQLQKELAMILQREVRDSRLGMVTISDVEVSRDLAYAKVFVTFL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHH
CIGEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRMSNLVTEVIN
HHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHC
SDKRRKHEAGRDEDEA
CHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRNDMPKEFSRTQRVAQQLQKELAMILQREVRDSRLGMVTISDVEVSRDLAYAKVFVTFL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHH
CIGEQTPESCLAALREHEVQIRMMLGKQIRLRLTPEIRFYYDNTLVEGMRMSNLVTEVIN
HHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHC
SDKRRKHEAGRDEDEA
CHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA