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The map label for this gene is yfdE [H]

Identifier: 146343714

GI number: 146343714

Start: 7246637

End: 7247749

Strand: Direct

Name: yfdE [H]

Synonym: BRADO6960

Alternate gene names: 146343714

Gene position: 7246637-7247749 (Clockwise)

Preceding gene: 146343713

Following gene: 146343716

Centisome position: 97.18

GC content: 69.18

Gene sequence:

>1113_bases
GTGCTCGACAAGACCGCCCCTCACAACCAGACCCGCGCCACCGGCCCGCTCGCAGGCTTCCGCATCGTCGAGTTCGCCGG
CATCGGACCTGGGCCGTTTGCCTGCATGCTGCTGGCCGACATGGGCGCGGAGGTGGTGACGCTGGATCGTGTCGGCGCGC
GCAAGACCATGAAGTCGGTCGCCGGCCGCGGTCGCAAGGTGATCGAGCTCGATCTGAAGGACAAGGCGGTCATCGCCGAG
GTGCTCGACCTGCTCGCCGGCGCCGATGCGCTCATCGAGGGCTTTCGTCCGGGCGTGATGGAACGGCTCGGGCTCGGCCC
GGATGTCGTGCTCGCGCGCAATCCGAAGCTGGTCTACGGCCGCATGACCGGTTGGGGTCAGGAGGGCCCGCTCGCACATG
CTGCCGGCCACGACATCAACTACATCTCGATCACCGGCGCGCTCGCCGCGATCGGCCCGAGGGAGCGGCCCGTGCCGCCG
CTCAACCTGGTCGGCGATTTCGGCGGCGGCGCGCTGTATCTCGTCGTCGGCGTGCTCGCCGCGCTGCTGGAAGCATCGAA
GTCCGGCAAGGGCCAGGTGGTGGACACCGCGATGTGCGACGGCGCCGCCTCCCTGCTCGCGATGTTCTTCGACCTCACCG
CGATGGGCCGCTGGACCGAGGGACGCGAGCGCAACTTCCTCGACGGCGGCGCGCATTTCTACGGCGTCTACGAATGCGCC
TGCGGCAACTTCATCTCGATCGGCTCGATCGAGCCGCAATTCTACATGCTGCTGCGCCAGCACGCCGGCCTCAGCGATCC
CGCCTTCGAGGCGCAGATGGACCCGCGCGCCTGGCCGGCGCTGAAGGAGAAGCTGGTCGCGGTGTTCAAGACCAAGACGC
GCGAGGAGTGGTGCGCGATCATGGAAGGCACCGACGTCTGCTTCGCGCCGGTGCTGACGATGTCGGAAGCTCCCAAGCAC
GCCCACATGGCGGCGCGGGGCGTGTTCGTCGAGCGCCACGGTGTGACGCAACCCGCGCCGGCGCCGCGCTTCTCGCGGAC
GCCTTCGACCATCCGCGAGCCGGAGGTCGCCGAGATCGGGGCATTGGTGCATGCGTGGAAGGCGGGGCGGTGA

Upstream 100 bases:

>100_bases
CCGCGCGGGACAATCGAGGGATCAGGACACGCCATTCGAAGCGCGCGAGGTCGAGTTGATCTCGTCATGAGCGCGATGAA
CGAACCAAGGACACAACGAC

Downstream 100 bases:

>100_bases
GCTCATCGTCGCAGACATGCCGACCACGCCCTAACCATCCCATCGGAATGAGTTGATCGCGCTCGCGCCCCAACCACGGT
GTCATCCCGGCGAACGCCGG

Product: putative Alpha-methylacyl-CoA racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MLDKTAPHNQTRATGPLAGFRIVEFAGIGPGPFACMLLADMGAEVVTLDRVGARKTMKSVAGRGRKVIELDLKDKAVIAE
VLDLLAGADALIEGFRPGVMERLGLGPDVVLARNPKLVYGRMTGWGQEGPLAHAAGHDINYISITGALAAIGPRERPVPP
LNLVGDFGGGALYLVVGVLAALLEASKSGKGQVVDTAMCDGAASLLAMFFDLTAMGRWTEGRERNFLDGGAHFYGVYECA
CGNFISIGSIEPQFYMLLRQHAGLSDPAFEAQMDPRAWPALKEKLVAVFKTKTREEWCAIMEGTDVCFAPVLTMSEAPKH
AHMAARGVFVERHGVTQPAPAPRFSRTPSTIREPEVAEIGALVHAWKAGR

Sequences:

>Translated_370_residues
MLDKTAPHNQTRATGPLAGFRIVEFAGIGPGPFACMLLADMGAEVVTLDRVGARKTMKSVAGRGRKVIELDLKDKAVIAE
VLDLLAGADALIEGFRPGVMERLGLGPDVVLARNPKLVYGRMTGWGQEGPLAHAAGHDINYISITGALAAIGPRERPVPP
LNLVGDFGGGALYLVVGVLAALLEASKSGKGQVVDTAMCDGAASLLAMFFDLTAMGRWTEGRERNFLDGGAHFYGVYECA
CGNFISIGSIEPQFYMLLRQHAGLSDPAFEAQMDPRAWPALKEKLVAVFKTKTREEWCAIMEGTDVCFAPVLTMSEAPKH
AHMAARGVFVERHGVTQPAPAPRFSRTPSTIREPEVAEIGALVHAWKAGR
>Mature_370_residues
MLDKTAPHNQTRATGPLAGFRIVEFAGIGPGPFACMLLADMGAEVVTLDRVGARKTMKSVAGRGRKVIELDLKDKAVIAE
VLDLLAGADALIEGFRPGVMERLGLGPDVVLARNPKLVYGRMTGWGQEGPLAHAAGHDINYISITGALAAIGPRERPVPP
LNLVGDFGGGALYLVVGVLAALLEASKSGKGQVVDTAMCDGAASLLAMFFDLTAMGRWTEGRERNFLDGGAHFYGVYECA
CGNFISIGSIEPQFYMLLRQHAGLSDPAFEAQMDPRAWPALKEKLVAVFKTKTREEWCAIMEGTDVCFAPVLTMSEAPKH
AHMAARGVFVERHGVTQPAPAPRFSRTPSTIREPEVAEIGALVHAWKAGR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=348, Percent_Identity=43.9655172413793, Blast_Score=294, Evalue=8e-80,
Organism=Homo sapiens, GI266456254, Length=348, Percent_Identity=43.9655172413793, Blast_Score=294, Evalue=9e-80,
Organism=Homo sapiens, GI266458393, Length=280, Percent_Identity=42.1428571428571, Blast_Score=225, Evalue=4e-59,
Organism=Homo sapiens, GI266458397, Length=243, Percent_Identity=45.679012345679, Blast_Score=220, Evalue=2e-57,
Organism=Homo sapiens, GI266458395, Length=135, Percent_Identity=45.9259259259259, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI42822893, Length=135, Percent_Identity=45.9259259259259, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI300863128, Length=365, Percent_Identity=24.3835616438356, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI300863124, Length=391, Percent_Identity=24.0409207161125, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI300863126, Length=161, Percent_Identity=29.8136645962733, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI87082093, Length=362, Percent_Identity=27.6243093922652, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1786222, Length=371, Percent_Identity=26.6846361185984, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788717, Length=210, Percent_Identity=29.0476190476191, Blast_Score=72, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=347, Percent_Identity=32.8530259365994, Blast_Score=187, Evalue=6e-48,
Organism=Caenorhabditis elegans, GI32564160, Length=333, Percent_Identity=31.2312312312312, Blast_Score=183, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24585488, Length=337, Percent_Identity=40.9495548961424, Blast_Score=261, Evalue=4e-70,
Organism=Drosophila melanogaster, GI24648431, Length=341, Percent_Identity=28.4457478005865, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39545; Mature: 39545

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKTAPHNQTRATGPLAGFRIVEFAGIGPGPFACMLLADMGAEVVTLDRVGARKTMKSV
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHH
AGRGRKVIELDLKDKAVIAEVLDLLAGADALIEGFRPGVMERLGLGPDVVLARNPKLVYG
HCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCCEEEECCCEEEEE
RMTGWGQEGPLAHAAGHDINYISITGALAAIGPRERPVPPLNLVGDFGGGALYLVVGVLA
ECCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCHHEEECCCCHHHHHHHHHHH
ALLEASKSGKGQVVDTAMCDGAASLLAMFFDLTAMGRWTEGRERNFLDGGAHFYGVYECA
HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
CGNFISIGSIEPQFYMLLRQHAGLSDPAFEAQMDPRAWPALKEKLVAVFKTKTREEWCAI
CCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHH
MEGTDVCFAPVLTMSEAPKHAHMAARGVFVERHGVTQPAPAPRFSRTPSTIREPEVAEIG
HCCCCHHHHHHHHHCCCCCHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
ALVHAWKAGR
HHHHHHCCCC
>Mature Secondary Structure
MLDKTAPHNQTRATGPLAGFRIVEFAGIGPGPFACMLLADMGAEVVTLDRVGARKTMKSV
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHH
AGRGRKVIELDLKDKAVIAEVLDLLAGADALIEGFRPGVMERLGLGPDVVLARNPKLVYG
HCCCCEEEEECCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHCCCCCEEEECCCEEEEE
RMTGWGQEGPLAHAAGHDINYISITGALAAIGPRERPVPPLNLVGDFGGGALYLVVGVLA
ECCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCHHEEECCCCHHHHHHHHHHH
ALLEASKSGKGQVVDTAMCDGAASLLAMFFDLTAMGRWTEGRERNFLDGGAHFYGVYECA
HHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
CGNFISIGSIEPQFYMLLRQHAGLSDPAFEAQMDPRAWPALKEKLVAVFKTKTREEWCAI
CCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHH
MEGTDVCFAPVLTMSEAPKHAHMAARGVFVERHGVTQPAPAPRFSRTPSTIREPEVAEIG
HCCCCHHHHHHHHHCCCCCHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
ALVHAWKAGR
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]