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The map label for this gene is psaB [H]

Identifier: 146343548

GI number: 146343548

Start: 7042782

End: 7044176

Strand: Reverse

Name: psaB [H]

Synonym: BRADO6785

Alternate gene names: 146343548

Gene position: 7044176-7042782 (Counterclockwise)

Preceding gene: 146343551

Following gene: 146343547

Centisome position: 94.47

GC content: 68.17

Gene sequence:

>1395_bases
ATGCGCGGACTTTTCAGGTGGAGCGGCAAATGGTGGCCCGGCGTCATCCCGCTGATCGTGCTTTGGGGCTTTGCCGCCTG
GACCAGCACCGTTCCGCTCGAGAATGATCTGGCAAGCCGCAGTTCGGCCGCGCTCAAGGGGGCCGTGCTCGACAAGACGA
GCATTGCCGTGGATGGTCGTGACGTGTCGCTGCGGGCCGACGCGTTCTCCGAGGCCGGCCGCCGTGACGCCGTGGCCGCC
GTCGATGCGGTGGCCGGCGTGCGTCTCGTCAACGACCAGACCAGGCTGGTGCCCGAGGCCAAGCCGTTTGTGTGGTCGGC
CGAGCGCGATGTCGTCCGGGTGACGCTCGGCGGCAATGCGCCGCTGCCGGCGCTGAAGGGCAGGTTGGTCGAGGCGACGC
GCGCGGCGCTGCCGGGCGTCGAAGTGGCCGATCAGATGGGGCTGGCGCGCGGCGCGCCGCCGCGCTTCGAGGACGCCGCG
CTGCTCCTGATCGGGCAGATCGGCAAGCTCAAGGACGGCAAGTTCACGATCTCCGATGGCGATGTCACGCTGACCGGCAT
GGCGCGCGAGCTCGGCGGCCGCGAGGCGCTCGCAACTGCGCTGGCCAAGCTGCCGGACGGCTTCAAGGTGGCGAGCAACG
AGGTCAGGGCGCCGCCCTACATCTTCCAGGCCTACAAGGATCCGGTGGCTGTCACGGTGACCTTGTCGGGCAACGTCCCC
GACGAGAACATCCATGCGGTCGTGGTCGGCTCGTCGTCGCGCAAATTCTTCAGCGAGAAGGTCGTCGACAATCTCAAGAA
CAGCGTCGGTGCGCCGGCCAATTTCGTCAACGCCGTGGTGCCGGCGCTCGGCGCGCTGTCGCGGCTCTCGACCGGCACGC
TGGTGGTGTCGGACCGCGACATCAAGATCTCCGGCGACGCGCTGTATGACGCGGCGGCCGCCCAGATCCGGACAGGGCTC
GCCAAGGACGTGCCGCAGGGCTGGCAGGTGAAGGCCGAGATCACGGTCAAGCCGGCCGCGGCGCCGGTCGATCCGACCGT
CTGCCAGCAGCTGTTCTCGGACCTGCTCGGCAAGGCCAAGATCCGCTTCGAGACCGGCCGCAGCGACCTCGACCGCGACT
CCACCGGCCTGCTCGACCGCCTGGTCGAGATCGCCTTCCGCTGTCCGACCGCCAATGTCGACATCATCGGCCACACCGAC
GCCGAGGGCGATTCAGCCGCCAATCAAGTGCTCTCTCAGAAGCGCGCCCAGGCCGTGGCTGATTATCTGGTCAAGGCCGG
GTTGCCGGCCGACCGCTTCACGCCGATCGGCTATGGCAGCACGCAGCCCATAGCTTCAAATGATACCGCCGAGGGCCGGA
CGCAGAACCGGCGCATCGAATTCGTGGTGAGGTGA

Upstream 100 bases:

>100_bases
CCGGGACACGCAACGGCCCGTTGCGGCGCTCTTCATTTCCGGTTTGACAGGCCTGCAAGGGTTTGTTTTCTCTCTGCTTC
CTCGATGCGACGGATGACGA

Downstream 100 bases:

>100_bases
CGTCATGGCGTATTTCGTTGCCTTCCACTGGGCCTGGCTGGCTGGCGCCTTCGCCATCGGACTGGCGATGGGCTGGGTTG
CCGTGGTGCATCGCGCCCCG

Product: putative outer membrane protein (ompA-like)

Products: NA

Alternate protein names: PsaB [H]

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MRGLFRWSGKWWPGVIPLIVLWGFAAWTSTVPLENDLASRSSAALKGAVLDKTSIAVDGRDVSLRADAFSEAGRRDAVAA
VDAVAGVRLVNDQTRLVPEAKPFVWSAERDVVRVTLGGNAPLPALKGRLVEATRAALPGVEVADQMGLARGAPPRFEDAA
LLLIGQIGKLKDGKFTISDGDVTLTGMARELGGREALATALAKLPDGFKVASNEVRAPPYIFQAYKDPVAVTVTLSGNVP
DENIHAVVVGSSSRKFFSEKVVDNLKNSVGAPANFVNAVVPALGALSRLSTGTLVVSDRDIKISGDALYDAAAAQIRTGL
AKDVPQGWQVKAEITVKPAAAPVDPTVCQQLFSDLLGKAKIRFETGRSDLDRDSTGLLDRLVEIAFRCPTANVDIIGHTD
AEGDSAANQVLSQKRAQAVADYLVKAGLPADRFTPIGYGSTQPIASNDTAEGRTQNRRIEFVVR

Sequences:

>Translated_464_residues
MRGLFRWSGKWWPGVIPLIVLWGFAAWTSTVPLENDLASRSSAALKGAVLDKTSIAVDGRDVSLRADAFSEAGRRDAVAA
VDAVAGVRLVNDQTRLVPEAKPFVWSAERDVVRVTLGGNAPLPALKGRLVEATRAALPGVEVADQMGLARGAPPRFEDAA
LLLIGQIGKLKDGKFTISDGDVTLTGMARELGGREALATALAKLPDGFKVASNEVRAPPYIFQAYKDPVAVTVTLSGNVP
DENIHAVVVGSSSRKFFSEKVVDNLKNSVGAPANFVNAVVPALGALSRLSTGTLVVSDRDIKISGDALYDAAAAQIRTGL
AKDVPQGWQVKAEITVKPAAAPVDPTVCQQLFSDLLGKAKIRFETGRSDLDRDSTGLLDRLVEIAFRCPTANVDIIGHTD
AEGDSAANQVLSQKRAQAVADYLVKAGLPADRFTPIGYGSTQPIASNDTAEGRTQNRRIEFVVR
>Mature_464_residues
MRGLFRWSGKWWPGVIPLIVLWGFAAWTSTVPLENDLASRSSAALKGAVLDKTSIAVDGRDVSLRADAFSEAGRRDAVAA
VDAVAGVRLVNDQTRLVPEAKPFVWSAERDVVRVTLGGNAPLPALKGRLVEATRAALPGVEVADQMGLARGAPPRFEDAA
LLLIGQIGKLKDGKFTISDGDVTLTGMARELGGREALATALAKLPDGFKVASNEVRAPPYIFQAYKDPVAVTVTLSGNVP
DENIHAVVVGSSSRKFFSEKVVDNLKNSVGAPANFVNAVVPALGALSRLSTGTLVVSDRDIKISGDALYDAAAAQIRTGL
AKDVPQGWQVKAEITVKPAAAPVDPTVCQQLFSDLLGKAKIRFETGRSDLDRDSTGLLDRLVEIAFRCPTANVDIIGHTD
AEGDSAANQVLSQKRAQAVADYLVKAGLPADRFTPIGYGSTQPIASNDTAEGRTQNRRIEFVVR

Specific function: PsaA and psaB bind P700, the primary electron donor of photosystem I (PSI), as well as the electron acceptors A0, A1 and FX. PSI is a plastocyanin/cytochrome c6-ferredoxin oxidoreductase, converting photonic excitation into a charge separation, which tran

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=104, Percent_Identity=36.5384615384615, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006665
- InterPro:   IPR001280
- InterPro:   IPR020586
- InterPro:   IPR006244 [H]

Pfam domain/function: PF00691 OmpA; PF00223 PsaA_PsaB [H]

EC number: NA

Molecular weight: Translated: 49196; Mature: 49196

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGLFRWSGKWWPGVIPLIVLWGFAAWTSTVPLENDLASRSSAALKGAVLDKTSIAVDGR
CCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCEEEECCC
DVSLRADAFSEAGRRDAVAAVDAVAGVRLVNDQTRLVPEAKPFVWSAERDVVRVTLGGNA
CEEEEHHHHHHCCCHHHHHHHHHHHCEEEECCCHHCCCCCCCCEEECCCCEEEEEECCCC
PLPALKGRLVEATRAALPGVEVADQMGLARGAPPRFEDAALLLIGQIGKLKDGKFTISDG
CCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCC
DVTLTGMARELGGREALATALAKLPDGFKVASNEVRAPPYIFQAYKDPVAVTVTLSGNVP
CEEEEEHHHHHCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHCCCCEEEEEEEECCCC
DENIHAVVVGSSSRKFFSEKVVDNLKNSVGAPANFVNAVVPALGALSRLSTGTLVVSDRD
CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
IKISGDALYDAAAAQIRTGLAKDVPQGWQVKAEITVKPAAAPVDPTVCQQLFSDLLGKAK
EEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCEE
IRFETGRSDLDRDSTGLLDRLVEIAFRCPTANVDIIGHTDAEGDSAANQVLSQKRAQAVA
EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
DYLVKAGLPADRFTPIGYGSTQPIASNDTAEGRTQNRRIEFVVR
HHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MRGLFRWSGKWWPGVIPLIVLWGFAAWTSTVPLENDLASRSSAALKGAVLDKTSIAVDGR
CCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECCCEEEECCC
DVSLRADAFSEAGRRDAVAAVDAVAGVRLVNDQTRLVPEAKPFVWSAERDVVRVTLGGNA
CEEEEHHHHHHCCCHHHHHHHHHHHCEEEECCCHHCCCCCCCCEEECCCCEEEEEECCCC
PLPALKGRLVEATRAALPGVEVADQMGLARGAPPRFEDAALLLIGQIGKLKDGKFTISDG
CCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCEEEECCC
DVTLTGMARELGGREALATALAKLPDGFKVASNEVRAPPYIFQAYKDPVAVTVTLSGNVP
CEEEEEHHHHHCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHCCCCEEEEEEEECCCC
DENIHAVVVGSSSRKFFSEKVVDNLKNSVGAPANFVNAVVPALGALSRLSTGTLVVSDRD
CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
IKISGDALYDAAAAQIRTGLAKDVPQGWQVKAEITVKPAAAPVDPTVCQQLFSDLLGKAK
EEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCEE
IRFETGRSDLDRDSTGLLDRLVEIAFRCPTANVDIIGHTDAEGDSAANQVLSQKRAQAVA
EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
DYLVKAGLPADRFTPIGYGSTQPIASNDTAEGRTQNRRIEFVVR
HHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 14621292 [H]