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The map label for this gene is ycjD [H]

Identifier: 146343541

GI number: 146343541

Start: 7035727

End: 7036116

Strand: Direct

Name: ycjD [H]

Synonym: BRADO6777

Alternate gene names: 146343541

Gene position: 7035727-7036116 (Clockwise)

Preceding gene: 146343539

Following gene: 146343544

Centisome position: 94.36

GC content: 58.72

Gene sequence:

>390_bases
GTGATGTCAGACACACCGCATCATCGACCGACCGGCAAGCGCATCCGTACTTTCGCGAAAGCGATGCGCCGGGAGCCGAC
TGATGCCGAAGCCGCAATGTGGCGGCTGCTGCGCGGCCGGCGACTGTCAGAGTTCAAGTTTCGCCGACAGGTGCCGTTCC
GAAACTACATCCTGGACTTCGTCTGCTTCGAGCAGCGGCTGGTGATCGAGATCGATGGCAGCCAGCATGCGGATGCCACG
GGTGATCGGACGAGAGACGAGGTGCTTGCTGGCGAAGGATTCAAAGTGGCTCGATACTGGAACAATGATGTCCTTCAAAA
ACGAACGGCTGTTCTCGAGGACATCCTCGCAAAGTTGAGCGAGAGGAGAGAGATCCCTCACCCGGCATGA

Upstream 100 bases:

>100_bases
TGGGGATGGCGCGGGCAAAGGGAAAGGGGCTTGGGAACTAGCGCATATAGCGGGCTCCGTATACCGTCTTGGGGAAGGGA
TAGGCCGCATCGGAGGCTGG

Downstream 100 bases:

>100_bases
TCGAGCTAAGCTCGATCATGCCACCCTCTCCCCTTGTGGGAGAGGGTGCAGCGAGCAAGCCGGGCGAAATTGGACAAACA
TTCAATTCGCCGACGAACGC

Product: putative restriction endonuclease-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MMSDTPHHRPTGKRIRTFAKAMRREPTDAEAAMWRLLRGRRLSEFKFRRQVPFRNYILDFVCFEQRLVIEIDGSQHADAT
GDRTRDEVLAGEGFKVARYWNNDVLQKRTAVLEDILAKLSERREIPHPA

Sequences:

>Translated_129_residues
MMSDTPHHRPTGKRIRTFAKAMRREPTDAEAAMWRLLRGRRLSEFKFRRQVPFRNYILDFVCFEQRLVIEIDGSQHADAT
GDRTRDEVLAGEGFKVARYWNNDVLQKRTAVLEDILAKLSERREIPHPA
>Mature_129_residues
MMSDTPHHRPTGKRIRTFAKAMRREPTDAEAAMWRLLRGRRLSEFKFRRQVPFRNYILDFVCFEQRLVIEIDGSQHADAT
GDRTRDEVLAGEGFKVARYWNNDVLQKRTAVLEDILAKLSERREIPHPA

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1162 and to HI_0925 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=114, Percent_Identity=44.7368421052632, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004603
- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 15181; Mature: 15181

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSDTPHHRPTGKRIRTFAKAMRREPTDAEAAMWRLLRGRRLSEFKFRRQVPFRNYILDF
CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
VCFEQRLVIEIDGSQHADATGDRTRDEVLAGEGFKVARYWNNDVLQKRTAVLEDILAKLS
HHHCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEHHCHHHHHHHHHHHHHHHHHHH
ERREIPHPA
HHCCCCCCC
>Mature Secondary Structure
MMSDTPHHRPTGKRIRTFAKAMRREPTDAEAAMWRLLRGRRLSEFKFRRQVPFRNYILDF
CCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
VCFEQRLVIEIDGSQHADATGDRTRDEVLAGEGFKVARYWNNDVLQKRTAVLEDILAKLS
HHHCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEHHCHHHHHHHHHHHHHHHHHHH
ERREIPHPA
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 8075395; 1364817 [H]