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The map label for this gene is ykgD [C]

Identifier: 146343445

GI number: 146343445

Start: 6937325

End: 6938134

Strand: Reverse

Name: ykgD [C]

Synonym: BRADO6674

Alternate gene names: 146343445

Gene position: 6938134-6937325 (Counterclockwise)

Preceding gene: 146343447

Following gene: 146343438

Centisome position: 93.05

GC content: 70.25

Gene sequence:

>810_bases
ATGGATCCGTTTGCCGCCTTGTTCGCCCACGTCACGCCGCGCGCCCGGACCTTCTTCGCCGGGAATCTCTGCAACAGCGT
CGATTTCACGGACATCGGGCATCTGCACCTGTTCAAGGGCGGCGTGCTGACCCTGACCCAGCCGGGCGCCGACGATCTCG
CCTTGCACGAGCCGATGCTGCTGTTCTTCCCGCGCGGACGGACGCATCGCTTCGTGGTCGATCCCGCGCGAGGCGCCGAT
CTCGTCTGCGCCACCGTCGAGCTCGGCGGTGCCGAGGGCAATCCGATCGGCGAGGGACTGCCGGAGCTGATCGTGATGCC
GATCGCCGGACATCCGACGCTCGCGCCGGTGTGCGATCTCTTGATGGCCGAGGGTTTTGCCGATGACGGCGGCCGGCAGG
CGGCGCTCGACCGGCTGTTCGACTATCTGCTGATCCTGATCGTCCGCCACGTCGTGGCCCATGGCGGCGTCGCGAGCGGC
GTGCTCGCCGGGCTCGCCGATCCGCGACTCGCCAAGGCGCTGACCGCGATCCACGACGCGCCGGCCAGGCCGTGGAGCCT
CGACGATCTCGCCGACATCGCCGGCATGTCGCGCACCCGCTTCGCCGACGCGTTCCGGACGCGCGTCGGCCGTACGCCGA
TCGAGTATCTCACGCTGTGGCGCATGGCGCTGGCGCGCCAGCTGCTGGCCAGGGGCAGGCCGGTCAAGAGCGTCGCGTCG
CAGGTCGGCTACGACAGCGCCGCGGCGTTCTCGCGGGTGTTCAGCAAAGTCTCGGGCCGTCCGCCGCGCGCGCTCGTCGG
CAAGGCCTGA

Upstream 100 bases:

>100_bases
AATGCGGGGCATGGAGGGGATCCTTCGTTGAGGAGTTGCACGCCCCCTCTATGCAGGACTATGAGTCACAGCAGGTGCCA
GAAACATTGCAGATCGTCCC

Downstream 100 bases:

>100_bases
TCCTACTCCGCCGCTACCATCTGCTGGATGCGCCACTGGCCGAGCAGCGCGCGCAAGGACGCCGGCTTCAGCGGCTTGTT
GAGCACGGCGATGTTGTCGT

Product: AraC/XylS family transcription factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MDPFAALFAHVTPRARTFFAGNLCNSVDFTDIGHLHLFKGGVLTLTQPGADDLALHEPMLLFFPRGRTHRFVVDPARGAD
LVCATVELGGAEGNPIGEGLPELIVMPIAGHPTLAPVCDLLMAEGFADDGGRQAALDRLFDYLLILIVRHVVAHGGVASG
VLAGLADPRLAKALTAIHDAPARPWSLDDLADIAGMSRTRFADAFRTRVGRTPIEYLTLWRMALARQLLARGRPVKSVAS
QVGYDSAAAFSRVFSKVSGRPPRALVGKA

Sequences:

>Translated_269_residues
MDPFAALFAHVTPRARTFFAGNLCNSVDFTDIGHLHLFKGGVLTLTQPGADDLALHEPMLLFFPRGRTHRFVVDPARGAD
LVCATVELGGAEGNPIGEGLPELIVMPIAGHPTLAPVCDLLMAEGFADDGGRQAALDRLFDYLLILIVRHVVAHGGVASG
VLAGLADPRLAKALTAIHDAPARPWSLDDLADIAGMSRTRFADAFRTRVGRTPIEYLTLWRMALARQLLARGRPVKSVAS
QVGYDSAAAFSRVFSKVSGRPPRALVGKA
>Mature_269_residues
MDPFAALFAHVTPRARTFFAGNLCNSVDFTDIGHLHLFKGGVLTLTQPGADDLALHEPMLLFFPRGRTHRFVVDPARGAD
LVCATVELGGAEGNPIGEGLPELIVMPIAGHPTLAPVCDLLMAEGFADDGGRQAALDRLFDYLLILIVRHVVAHGGVASG
VLAGLADPRLAKALTAIHDAPARPWSLDDLADIAGMSRTRFADAFRTRVGRTPIEYLTLWRMALARQLLARGRPVKSVAS
QVGYDSAAAFSRVFSKVSGRPPRALVGKA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=232, Percent_Identity=27.1551724137931, Blast_Score=88, Evalue=5e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28734; Mature: 28734

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPFAALFAHVTPRARTFFAGNLCNSVDFTDIGHLHLFKGGVLTLTQPGADDLALHEPML
CCHHHHHHHHCCCHHHHEECCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCHHHCCCEE
LFFPRGRTHRFVVDPARGADLVCATVELGGAEGNPIGEGLPELIVMPIAGHPTLAPVCDL
EEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCCHHCCCCHHEEECCCCCCCHHHHHHH
LMAEGFADDGGRQAALDRLFDYLLILIVRHVVAHGGVASGVLAGLADPRLAKALTAIHDA
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
PARPWSLDDLADIAGMSRTRFADAFRTRVGRTPIEYLTLWRMALARQLLARGRPVKSVAS
CCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QVGYDSAAAFSRVFSKVSGRPPRALVGKA
HCCCCHHHHHHHHHHHHCCCCCCHHCCCC
>Mature Secondary Structure
MDPFAALFAHVTPRARTFFAGNLCNSVDFTDIGHLHLFKGGVLTLTQPGADDLALHEPML
CCHHHHHHHHCCCHHHHEECCCCCCCCCCCCCCCEEEECCCEEEEECCCCCCHHHCCCEE
LFFPRGRTHRFVVDPARGADLVCATVELGGAEGNPIGEGLPELIVMPIAGHPTLAPVCDL
EEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCCHHCCCCHHEEECCCCCCCHHHHHHH
LMAEGFADDGGRQAALDRLFDYLLILIVRHVVAHGGVASGVLAGLADPRLAKALTAIHDA
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHCC
PARPWSLDDLADIAGMSRTRFADAFRTRVGRTPIEYLTLWRMALARQLLARGRPVKSVAS
CCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
QVGYDSAAAFSRVFSKVSGRPPRALVGKA
HCCCCHHHHHHHHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]