Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
---|---|
Accession | NC_009445 |
Length | 7,456,587 |
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The map label for this gene is prpE [C]
Identifier: 146343365
GI number: 146343365
Start: 6841910
End: 6843814
Strand: Reverse
Name: prpE [C]
Synonym: BRADO6593
Alternate gene names: 146343365
Gene position: 6843814-6841910 (Counterclockwise)
Preceding gene: 146343366
Following gene: 146343364
Centisome position: 91.78
GC content: 66.19
Gene sequence:
>1905_bases ATGAGCGCTGCGAGCCGCTATCACGAGGTCCATGCCCGGTCGCTGCAGGATCCGGAAGGGTTCTGGGCCGAGGCCGCCCG CGCGATCGACTGGATCGAGCCGGCCAAGACAATCTTCGATCCCTCGATGGGCGCCTATGGCCGCTGGTTCGCCGGCGCCG TCGTCAACACCTGCTTCAACGCGCTCGACCGCCACGTCGCCGCCGGCCGCGGCGAGCAGCTGGCTCTGATTCATGATTCG CCGCTGACGAATTCCGTCACCAGGATCACCTATGCCGAGATGCTGAAGGAGGTACAGACGCTCGCCGCCATCATGCAGGA TTTCGGCGTCGGCAAGGGTGACCGCGTCATCCTCTACATGCCGATGGTGCCGGAGGCGATGGTCGCGATGCTCGCCTGCG CGCGCATCGGCGCGGTGCATTCAGTGGTGTTCGGCGGCTTCGCGGCCAAGGAGCTCGCGACCCGCATCGACGACGCGACC CCGAAGCTGGTGCTGTCGGCGAGCTGCGGCATCGAGCCCGGCCGCATCGTGCAATACAAGCCGCTGCTCGACCAGGCGAT CGAGCTTGCCGACAAGCGGCCGCAGGCCTGCATCATCCTGCAGCGGCCGGAGCATGTCTGCGAGCTCAAGCCCGGCCGCG ACTACGACTGGGCGGCGCTGCGCAAATCCGCAATCGCCAACGGCAAGCTCGCGCCTTGCGTGCCCGTGCTCGCGACCGAT CCGCTCTACATCCTCTACACCTCCGGCACCACCGGCAAGCCGAAGGGCGTCGTGCGCGACAATGGCGGTCACCTCGTCGC GCTGAAATGGTCGATGGAGAATCTCTACGGCATCAAGCCCGGCGAGGTCTGGTGGTGCGGCTCCGACATCGGCTGGGTCG TGGGCCACAGCTACATCATCTACGGGCCGCTGATTCACGGCGCGACCTCGGTGATGTATGAGGGCAAGCCGGTCGGCACG CCCGATGCCGGCGCGTTCTGGCGCGTCATCGCCGACCACAAGGCCGTCGCGCTGTTCACCGCGCCCACGGCGTTCCGCGC GATCCGCAAGGAAGACCCGGAAGGGACGTTGCTGAGCAAGTATGATCTGTCGCAGTTCCGCACGCTGTTCCTGGCCGGGG AGCGCGCCGACCCGCCGACGGTGGAATGGGCCGAGCAGCAGCTCAAGGTGCCGGTGATCGATCATTGGTGGCAGACCGAG ACCGGCTGGTGCATCGCCGGCAACCCGGTGGGCCTCGGCCTCTTACCGGTCAAGCATGGGTCTCCGACGGTGCCGATGCC GGGCTATCAGGTCGATATCGTCGACGAGGCAGCGAAGCCGGTGCCTGCCAACACAATGGGCTCGATCGTGATCAAGCTGC CGATGCCCCCTGGTTGTCTGCCGACGCTGTGGCAGCAGGAGGATCGCTTCAAGGAATCCTACCTCAGCGAATTCCCCGGC TACTACAAGACCTCCGATGCCGGCTTCAAGGATGAGGACGGCTATGTCTTCGTCATGGGCCGCACCGACGACATCATCAA CGTTGCCGGCCATCGGCTGTCGACCGGCGGCATGGAGGAAATCCTGGCGTCGCATCCCGATGTCGCCGAATGCGCCGTGC TCGGCATCAAGGACGCGATCAAGGGCGAGGTGCCCTGCGGCTTCCTGGTGCTCAAGGCCGGGGTCTCGCGCAGCCCGTCG GTGATCGAGAAGGAGATCGTCGCGCTGGTGCGCGACAAGCTCGGCCCGGTCGCGGCGTTCAAGCTCGCCATCACCGTCGG CCGCCTGCCGAAGACACGCTCCGGCAAGATCCTGCGCGGCACCATCAAGAAGATCGCCGACGGCGAGCAGTGGAGCATGC CGGCCACGATCGAGGACCCCAAGGTTCTCGAGGAGATCGGCGAGGCGCTGAAAAGCCGGGTGTAG
Upstream 100 bases:
>100_bases CCGCACGCCCGTGCCTGATCTGGATCAATTCATGATGGCTTGAACTGTCGCTTTGTCCCGGACAATAGTTGGGAATAAAC ACAGATCTTGGGGAAACGTC
Downstream 100 bases:
>100_bases AGCGAGCGCTAGCGTTCGCCCGTTTCCACGTCGTCATGGCCGGGCTTGTCCCGGCCATCCACGTCGAGCGGCCCCTTGGG AACGACGTGGATGCCCGTGA
Product: putative propionate--CoA ligase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 634; Mature: 633
Protein sequence:
>634_residues MSAASRYHEVHARSLQDPEGFWAEAARAIDWIEPAKTIFDPSMGAYGRWFAGAVVNTCFNALDRHVAAGRGEQLALIHDS PLTNSVTRITYAEMLKEVQTLAAIMQDFGVGKGDRVILYMPMVPEAMVAMLACARIGAVHSVVFGGFAAKELATRIDDAT PKLVLSASCGIEPGRIVQYKPLLDQAIELADKRPQACIILQRPEHVCELKPGRDYDWAALRKSAIANGKLAPCVPVLATD PLYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGIKPGEVWWCGSDIGWVVGHSYIIYGPLIHGATSVMYEGKPVGT PDAGAFWRVIADHKAVALFTAPTAFRAIRKEDPEGTLLSKYDLSQFRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQTE TGWCIAGNPVGLGLLPVKHGSPTVPMPGYQVDIVDEAAKPVPANTMGSIVIKLPMPPGCLPTLWQQEDRFKESYLSEFPG YYKTSDAGFKDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGIKDAIKGEVPCGFLVLKAGVSRSPS VIEKEIVALVRDKLGPVAAFKLAITVGRLPKTRSGKILRGTIKKIADGEQWSMPATIEDPKVLEEIGEALKSRV
Sequences:
>Translated_634_residues MSAASRYHEVHARSLQDPEGFWAEAARAIDWIEPAKTIFDPSMGAYGRWFAGAVVNTCFNALDRHVAAGRGEQLALIHDS PLTNSVTRITYAEMLKEVQTLAAIMQDFGVGKGDRVILYMPMVPEAMVAMLACARIGAVHSVVFGGFAAKELATRIDDAT PKLVLSASCGIEPGRIVQYKPLLDQAIELADKRPQACIILQRPEHVCELKPGRDYDWAALRKSAIANGKLAPCVPVLATD PLYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGIKPGEVWWCGSDIGWVVGHSYIIYGPLIHGATSVMYEGKPVGT PDAGAFWRVIADHKAVALFTAPTAFRAIRKEDPEGTLLSKYDLSQFRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQTE TGWCIAGNPVGLGLLPVKHGSPTVPMPGYQVDIVDEAAKPVPANTMGSIVIKLPMPPGCLPTLWQQEDRFKESYLSEFPG YYKTSDAGFKDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGIKDAIKGEVPCGFLVLKAGVSRSPS VIEKEIVALVRDKLGPVAAFKLAITVGRLPKTRSGKILRGTIKKIADGEQWSMPATIEDPKVLEEIGEALKSRV >Mature_633_residues SAASRYHEVHARSLQDPEGFWAEAARAIDWIEPAKTIFDPSMGAYGRWFAGAVVNTCFNALDRHVAAGRGEQLALIHDSP LTNSVTRITYAEMLKEVQTLAAIMQDFGVGKGDRVILYMPMVPEAMVAMLACARIGAVHSVVFGGFAAKELATRIDDATP KLVLSASCGIEPGRIVQYKPLLDQAIELADKRPQACIILQRPEHVCELKPGRDYDWAALRKSAIANGKLAPCVPVLATDP LYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGIKPGEVWWCGSDIGWVVGHSYIIYGPLIHGATSVMYEGKPVGTP DAGAFWRVIADHKAVALFTAPTAFRAIRKEDPEGTLLSKYDLSQFRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQTET GWCIAGNPVGLGLLPVKHGSPTVPMPGYQVDIVDEAAKPVPANTMGSIVIKLPMPPGCLPTLWQQEDRFKESYLSEFPGY YKTSDAGFKDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGIKDAIKGEVPCGFLVLKAGVSRSPSV IEKEIVALVRDKLGPVAAFKLAITVGRLPKTRSGKILRGTIKKIADGEQWSMPATIEDPKVLEEIGEALKSRV
Specific function: Catalyzes The Synthesis Of Propionyl-CoA From Propionate And CoA. Also Converts Acetate To Acetyl-CoA But With A Lower Specific Activity (By Similarity). [C]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI13375727, Length=637, Percent_Identity=50.5494505494505, Blast_Score=682, Evalue=0.0, Organism=Homo sapiens, GI8923896, Length=660, Percent_Identity=35.4545454545455, Blast_Score=398, Evalue=1e-111, Organism=Homo sapiens, GI253970489, Length=670, Percent_Identity=35.3731343283582, Blast_Score=394, Evalue=1e-109, Organism=Homo sapiens, GI28416953, Length=632, Percent_Identity=37.1835443037975, Blast_Score=383, Evalue=1e-106, Organism=Homo sapiens, GI38505220, Length=525, Percent_Identity=27.4285714285714, Blast_Score=179, Evalue=7e-45, Organism=Homo sapiens, GI115511026, Length=523, Percent_Identity=26.9598470363289, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI42544132, Length=520, Percent_Identity=26.9230769230769, Blast_Score=159, Evalue=1e-38, Organism=Homo sapiens, GI31982927, Length=639, Percent_Identity=25.0391236306729, Blast_Score=155, Evalue=8e-38, Organism=Homo sapiens, GI58082049, Length=530, Percent_Identity=26.0377358490566, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI157311624, Length=534, Percent_Identity=26.0299625468165, Blast_Score=154, Evalue=3e-37, Organism=Homo sapiens, GI157311622, Length=534, Percent_Identity=26.0299625468165, Blast_Score=154, Evalue=3e-37, Organism=Homo sapiens, GI122937307, Length=499, Percent_Identity=26.25250501002, Blast_Score=149, Evalue=8e-36, Organism=Homo sapiens, GI156151445, Length=594, Percent_Identity=22.8956228956229, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI195947378, Length=432, Percent_Identity=23.6111111111111, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI42544134, Length=369, Percent_Identity=22.4932249322493, Blast_Score=85, Evalue=3e-16, Organism=Homo sapiens, GI187761345, Length=394, Percent_Identity=25.3807106598985, Blast_Score=80, Evalue=7e-15, Organism=Homo sapiens, GI187761343, Length=394, Percent_Identity=25.3807106598985, Blast_Score=80, Evalue=7e-15, Organism=Escherichia coli, GI1786529, Length=631, Percent_Identity=45.324881141046, Blast_Score=520, Evalue=1e-148, Organism=Escherichia coli, GI1790505, Length=634, Percent_Identity=38.1703470031546, Blast_Score=425, Evalue=1e-120, Organism=Escherichia coli, GI221142682, Length=557, Percent_Identity=24.5960502692998, Blast_Score=125, Evalue=8e-30, Organism=Escherichia coli, GI1788107, Length=554, Percent_Identity=24.187725631769, Blast_Score=109, Evalue=5e-25, Organism=Escherichia coli, GI145693145, Length=525, Percent_Identity=25.1428571428571, Blast_Score=106, Evalue=4e-24, Organism=Escherichia coli, GI1786801, Length=525, Percent_Identity=23.6190476190476, Blast_Score=88, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71983001, Length=649, Percent_Identity=32.9738058551618, Blast_Score=336, Evalue=2e-92, Organism=Caenorhabditis elegans, GI71982997, Length=649, Percent_Identity=32.9738058551618, Blast_Score=335, Evalue=3e-92, Organism=Caenorhabditis elegans, GI17569507, Length=646, Percent_Identity=22.7554179566563, Blast_Score=129, Evalue=5e-30, Organism=Caenorhabditis elegans, GI71985884, Length=593, Percent_Identity=23.4401349072513, Blast_Score=110, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17559526, Length=564, Percent_Identity=22.1631205673759, Blast_Score=109, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17560308, Length=544, Percent_Identity=24.0808823529412, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17557194, Length=561, Percent_Identity=24.0641711229947, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17531443, Length=540, Percent_Identity=22.962962962963, Blast_Score=93, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17538037, Length=181, Percent_Identity=29.2817679558011, Blast_Score=82, Evalue=9e-16, Organism=Saccharomyces cerevisiae, GI6319264, Length=646, Percent_Identity=34.8297213622291, Blast_Score=410, Evalue=1e-115, Organism=Saccharomyces cerevisiae, GI6323182, Length=648, Percent_Identity=35.0308641975309, Blast_Score=404, Evalue=1e-113, Organism=Saccharomyces cerevisiae, GI6319699, Length=546, Percent_Identity=23.4432234432234, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI21355225, Length=632, Percent_Identity=46.5189873417722, Blast_Score=618, Evalue=1e-177, Organism=Drosophila melanogaster, GI24667955, Length=654, Percent_Identity=36.697247706422, Blast_Score=409, Evalue=1e-114, Organism=Drosophila melanogaster, GI62472339, Length=558, Percent_Identity=37.6344086021505, Blast_Score=361, Evalue=1e-99, Organism=Drosophila melanogaster, GI24667959, Length=527, Percent_Identity=37.1916508538899, Blast_Score=329, Evalue=4e-90, Organism=Drosophila melanogaster, GI21355181, Length=545, Percent_Identity=22.2018348623853, Blast_Score=86, Evalue=7e-17, Organism=Drosophila melanogaster, GI18859661, Length=563, Percent_Identity=23.6234458259325, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI24648260, Length=375, Percent_Identity=25.6, Blast_Score=85, Evalue=2e-16, Organism=Drosophila melanogaster, GI281365686, Length=368, Percent_Identity=22.8260869565217, Blast_Score=76, Evalue=8e-14, Organism=Drosophila melanogaster, GI21356441, Length=373, Percent_Identity=22.5201072386059, Blast_Score=72, Evalue=9e-13, Organism=Drosophila melanogaster, GI24653035, Length=376, Percent_Identity=24.468085106383, Blast_Score=70, Evalue=5e-12, Organism=Drosophila melanogaster, GI21356947, Length=371, Percent_Identity=22.911051212938, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.2.1.17 [C]
Molecular weight: Translated: 68931; Mature: 68800
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAASRYHEVHARSLQDPEGFWAEAARAIDWIEPAKTIFDPSMGAYGRWFAGAVVNTCFN CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH ALDRHVAAGRGEQLALIHDSPLTNSVTRITYAEMLKEVQTLAAIMQDFGVGKGDRVILYM HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC PMVPEAMVAMLACARIGAVHSVVFGGFAAKELATRIDDATPKLVLSASCGIEPGRIVQYK CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEH PLLDQAIELADKRPQACIILQRPEHVCELKPGRDYDWAALRKSAIANGKLAPCVPVLATD HHHHHHHHHHCCCCCEEEEEECCCHHEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEECC PLYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGIKPGEVWWCGSDIGWVVGHSYII CEEEEEECCCCCCCCCEEECCCCEEEEEEEEHHHHCCCCCCCEEEECCCCCHHHCCCEEE YGPLIHGATSVMYEGKPVGTPDAGAFWRVIADHKAVALFTAPTAFRAIRKEDPEGTLLSK EECHHHCCHHEEECCCCCCCCCCCHHHHEECCCCEEEEEECCHHHHHHHCCCCCCCEEEH YDLSQFRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQTETGWCIAGNPVGLGLLPVKHG HHHHHHHEEEEECCCCCCCCHHHHHHHCCCCEECCCCCCCCCEEEECCCCCEEEEEECCC SPTVPMPGYQVDIVDEAAKPVPANTMGSIVIKLPMPPGCLPTLWQQEDRFKESYLSEFPG CCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC YYKTSDAGFKDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGIKDAI CEECCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHCCHHHH KGEVPCGFLVLKAGVSRSPSVIEKEIVALVRDKLGPVAAFKLAITVGRLPKTRSGKILRG CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCHHH TIKKIADGEQWSMPATIEDPKVLEEIGEALKSRV HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure SAASRYHEVHARSLQDPEGFWAEAARAIDWIEPAKTIFDPSMGAYGRWFAGAVVNTCFN CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH ALDRHVAAGRGEQLALIHDSPLTNSVTRITYAEMLKEVQTLAAIMQDFGVGKGDRVILYM HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC PMVPEAMVAMLACARIGAVHSVVFGGFAAKELATRIDDATPKLVLSASCGIEPGRIVQYK CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEH PLLDQAIELADKRPQACIILQRPEHVCELKPGRDYDWAALRKSAIANGKLAPCVPVLATD HHHHHHHHHHCCCCCEEEEEECCCHHEECCCCCCCCHHHHHHHHHCCCCCCCCCCEEECC PLYILYTSGTTGKPKGVVRDNGGHLVALKWSMENLYGIKPGEVWWCGSDIGWVVGHSYII CEEEEEECCCCCCCCCEEECCCCEEEEEEEEHHHHCCCCCCCEEEECCCCCHHHCCCEEE YGPLIHGATSVMYEGKPVGTPDAGAFWRVIADHKAVALFTAPTAFRAIRKEDPEGTLLSK EECHHHCCHHEEECCCCCCCCCCCHHHHEECCCCEEEEEECCHHHHHHHCCCCCCCEEEH YDLSQFRTLFLAGERADPPTVEWAEQQLKVPVIDHWWQTETGWCIAGNPVGLGLLPVKHG HHHHHHHEEEEECCCCCCCCHHHHHHHCCCCEECCCCCCCCCEEEECCCCCEEEEEECCC SPTVPMPGYQVDIVDEAAKPVPANTMGSIVIKLPMPPGCLPTLWQQEDRFKESYLSEFPG CCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC YYKTSDAGFKDEDGYVFVMGRTDDIINVAGHRLSTGGMEEILASHPDVAECAVLGIKDAI CEECCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHCCHHHH KGEVPCGFLVLKAGVSRSPSVIEKEIVALVRDKLGPVAAFKLAITVGRLPKTRSGKILRG CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCHHH TIKKIADGEQWSMPATIEDPKVLEEIGEALKSRV HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043; 1339433 [H]