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The map label for this gene is cycA [H]

Identifier: 146342949

GI number: 146342949

Start: 6359917

End: 6360312

Strand: Direct

Name: cycA [H]

Synonym: BRADO6132

Alternate gene names: 146342949

Gene position: 6359917-6360312 (Clockwise)

Preceding gene: 146342947

Following gene: 146342951

Centisome position: 85.29

GC content: 59.6

Gene sequence:

>396_bases
ATGAAGAAACTGACTTTGAGCGCGTTCGTCATTTTCGCCACGTCGTCGCTGGCCACTGCCGCGCTGGCGCAGGACGCGGC
CGCCGGCAAGACGTCCTTCAACAAGTGCCTGCCCTGCCATGCGATCGGCGAGGGTGCGAAGAACAAGGTGGGCCCGGAGC
TGAACGGCCTCGACGGCCGCAAGTCGGGCACCGTGCCGGACTACAATTATTCCGAAGCCAACAAGAACTCGGGCATCACC
TGGAACGAGGCCGTGTTCAAGGAATACATCAAGGATCCGAAGGCCAAGATCCCAGGCACCAAGATGACCTTCGCCGGCAT
CAAGAACGAGACCGAGGTCAACAACCTCTGGGCCTATGTCTCGTCGTTCGACAAGGACGGCAAGCAGAAGCAGTAA

Upstream 100 bases:

>100_bases
GATGTGCTGATTCCGGTCGCCGCTTCGGCGCTTGTGCGTCGCCTGAGGCCATGCAACAACCTGCCCACCCATTCGTCTCG
TAACCCACAGAGCCTGATCC

Downstream 100 bases:

>100_bases
GCGGCCGCGCCACGTCCGCTCCGCCTTCGAAGCCCCGGCCGCGCGCCGGGGCTTTTTCGTTTTCAAGGCGCGGCAGCCTC
GGTCGCGGTGAGCGCGCCGG

Product: cytochrome C

Products: NA

Alternate protein names: Cytochrome c550 [H]

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKLTLSAFVIFATSSLATAALAQDAAAGKTSFNKCLPCHAIGEGAKNKVGPELNGLDGRKSGTVPDYNYSEANKNSGIT
WNEAVFKEYIKDPKAKIPGTKMTFAGIKNETEVNNLWAYVSSFDKDGKQKQ

Sequences:

>Translated_131_residues
MKKLTLSAFVIFATSSLATAALAQDAAAGKTSFNKCLPCHAIGEGAKNKVGPELNGLDGRKSGTVPDYNYSEANKNSGIT
WNEAVFKEYIKDPKAKIPGTKMTFAGIKNETEVNNLWAYVSSFDKDGKQKQ
>Mature_131_residues
MKKLTLSAFVIFATSSLATAALAQDAAAGKTSFNKCLPCHAIGEGAKNKVGPELNGLDGRKSGTVPDYNYSEANKNSGIT
WNEAVFKEYIKDPKAKIPGTKMTFAGIKNETEVNNLWAYVSSFDKDGKQKQ

Specific function: Plays a role in bacteroid respiration under conditions of oxygen limitation. Required for electron-transfer during denitrification [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI11128019, Length=97, Percent_Identity=50.5154639175258, Blast_Score=101, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17539604, Length=99, Percent_Identity=45.4545454545455, Blast_Score=91, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17566554, Length=97, Percent_Identity=43.298969072165, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6320796, Length=97, Percent_Identity=48.4536082474227, Blast_Score=98, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6322508, Length=99, Percent_Identity=43.4343434343434, Blast_Score=91, Evalue=8e-20,
Organism=Drosophila melanogaster, GI17137228, Length=104, Percent_Identity=49.0384615384615, Blast_Score=102, Evalue=9e-23,
Organism=Drosophila melanogaster, GI17137204, Length=99, Percent_Identity=50.5050505050505, Blast_Score=99, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 14110; Mature: 14110

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTLSAFVIFATSSLATAALAQDAAAGKTSFNKCLPCHAIGEGAKNKVGPELNGLDGR
CCCCHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
KSGTVPDYNYSEANKNSGITWNEAVFKEYIKDPKAKIPGTKMTFAGIKNETEVNNLWAYV
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
SSFDKDGKQKQ
HHHCCCCCCCC
>Mature Secondary Structure
MKKLTLSAFVIFATSSLATAALAQDAAAGKTSFNKCLPCHAIGEGAKNKVGPELNGLDGR
CCCCHHHHHEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
KSGTVPDYNYSEANKNSGITWNEAVFKEYIKDPKAKIPGTKMTFAGIKNETEVNNLWAYV
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
SSFDKDGKQKQ
HHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721713; 12597275 [H]