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The map label for this gene is ycdJ [C]

Identifier: 146342902

GI number: 146342902

Start: 6310110

End: 6311015

Strand: Reverse

Name: ycdJ [C]

Synonym: BRADO6083

Alternate gene names: 146342902

Gene position: 6311015-6310110 (Counterclockwise)

Preceding gene: 146342903

Following gene: 146342900

Centisome position: 84.64

GC content: 65.23

Gene sequence:

>906_bases
ATGTCTGATCTCGCCGATCTGTTTCCAGGCTATGCGTCCGAATGGATCAACACCGCATCGGGGCGGATTTTCGCGCGCGT
CGGCGGCAACGGTCCGCCGCTGCTCCTGCTGCACGGCTTTTCCGAGACGCATGTGATGTGGCACCGCGTGGCCCCGGCGC
TGGCCGATCGCTTCAAGTTGATCATCGCCGATCTGCCGGGTTACGGCTGGTCGGACATGCCCGACAGCGATGCCGACCAC
ACGCCCTATACCAAGCGCGCAATGGCCCATGCGATCGTCGAGGCTATGGAGCAGCTCGGCCACGTCCACTTTGCGCTGGC
CGGCCACGACCGCGGTGGCCGCGTCGCCTATCGCCTCGCGCTCGACCATCCTGGCCGTCTGTCGCAGCTCGCCGTGCTCG
ATATCCTGCCGACCTACGATTATTGGGAGCGCATGAACCGCGCCTACGCGCTGAAGATCTATCATTGGGCCTTCCTGGCC
CAGCCGGCGCCGCTGCCGGAAACACTGATCGCGGGATCCGGCGAATTCTTCCTCAAGCAAAAGATGGCGAGCCAAACCAA
GTCGAAGACACTGGACGCGATCGACCCCCGCGCGCTGCAGCACTATCTCGCGCCGTTCCGCGATCCCGCCCGTATCCATG
CGATGTGCGAGGACTATCGGGCCGGTGCTTACGCCGACTACGAGATCGACAAGGCCGATCTCGCGGCCGGCAGGAAGATC
ACGACCCCGATGCTGGCGCTGTGGGGCGATGCCGGGATTGCCAGCGCAGCGGCGACGCCGCTCGACACCTGGCAGAGATG
GGCGACCAACGTCCGCGGCGTGGCGGTCGATTCCGGGCACTTCCTCACCGAGGAGAACCCGGCCGAAACGGCGCGGCTGT
TGCGGGAGTTCTTGCTGAGCAAGTGA

Upstream 100 bases:

>100_bases
GTTCATGAGCGGCGTCGGCGCACTGCCGGTCCGCATCTCGCTTTGCGCCGCGCGCCGGTCGACGGTAGCATGACGCGCGA
TCATCGCCCGTGAGGCCGAC

Downstream 100 bases:

>100_bases
CATCAGCGCCGCGCCTTAAAGAACTCCCTGAGCATTTGCGCCGACTGCTGCTCGCCGACCGCCGAATAGACCTCCGGTGC
GTGATGGCACGTCGGCGCGG

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSDLADLFPGYASEWINTASGRIFARVGGNGPPLLLLHGFSETHVMWHRVAPALADRFKLIIADLPGYGWSDMPDSDADH
TPYTKRAMAHAIVEAMEQLGHVHFALAGHDRGGRVAYRLALDHPGRLSQLAVLDILPTYDYWERMNRAYALKIYHWAFLA
QPAPLPETLIAGSGEFFLKQKMASQTKSKTLDAIDPRALQHYLAPFRDPARIHAMCEDYRAGAYADYEIDKADLAAGRKI
TTPMLALWGDAGIASAAATPLDTWQRWATNVRGVAVDSGHFLTEENPAETARLLREFLLSK

Sequences:

>Translated_301_residues
MSDLADLFPGYASEWINTASGRIFARVGGNGPPLLLLHGFSETHVMWHRVAPALADRFKLIIADLPGYGWSDMPDSDADH
TPYTKRAMAHAIVEAMEQLGHVHFALAGHDRGGRVAYRLALDHPGRLSQLAVLDILPTYDYWERMNRAYALKIYHWAFLA
QPAPLPETLIAGSGEFFLKQKMASQTKSKTLDAIDPRALQHYLAPFRDPARIHAMCEDYRAGAYADYEIDKADLAAGRKI
TTPMLALWGDAGIASAAATPLDTWQRWATNVRGVAVDSGHFLTEENPAETARLLREFLLSK
>Mature_300_residues
SDLADLFPGYASEWINTASGRIFARVGGNGPPLLLLHGFSETHVMWHRVAPALADRFKLIIADLPGYGWSDMPDSDADHT
PYTKRAMAHAIVEAMEQLGHVHFALAGHDRGGRVAYRLALDHPGRLSQLAVLDILPTYDYWERMNRAYALKIYHWAFLAQ
PAPLPETLIAGSGEFFLKQKMASQTKSKTLDAIDPRALQHYLAPFRDPARIHAMCEDYRAGAYADYEIDKADLAAGRKIT
TPMLALWGDAGIASAAATPLDTWQRWATNVRGVAVDSGHFLTEENPAETARLLREFLLSK

Specific function: Catalyzes the hydrolytic defluorination of fluoroacetate to produce glycolate. Has low activity towards chloroacetate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI218777840, Length=279, Percent_Identity=27.5985663082437, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI13376164, Length=279, Percent_Identity=27.5985663082437, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI218777837, Length=282, Percent_Identity=24.113475177305, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: =3.8.1.3 [H]

Molecular weight: Translated: 33409; Mature: 33278

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLADLFPGYASEWINTASGRIFARVGGNGPPLLLLHGFSETHVMWHRVAPALADRFKL
CCCHHHHCCCHHHHHHHCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHEE
IIADLPGYGWSDMPDSDADHTPYTKRAMAHAIVEAMEQLGHVHFALAGHDRGGRVAYRLA
EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEE
LDHPGRLSQLAVLDILPTYDYWERMNRAYALKIYHWAFLAQPAPLPETLIAGSGEFFLKQ
ECCCCCHHHHHHHHHCCCHHHHHHCCCEEEEEEEHHHHHCCCCCCCHHHHCCCCHHHHHH
KMASQTKSKTLDAIDPRALQHYLAPFRDPARIHAMCEDYRAGAYADYEIDKADLAAGRKI
HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCC
TTPMLALWGDAGIASAAATPLDTWQRWATNVRGVAVDSGHFLTEENPAETARLLREFLLS
CCHHHHHHCCCCHHHHCCCCHHHHHHHHCCCCEEEEECCCEECCCCHHHHHHHHHHHHHC
K
C
>Mature Secondary Structure 
SDLADLFPGYASEWINTASGRIFARVGGNGPPLLLLHGFSETHVMWHRVAPALADRFKL
CCHHHHCCCHHHHHHHCCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHEE
IIADLPGYGWSDMPDSDADHTPYTKRAMAHAIVEAMEQLGHVHFALAGHDRGGRVAYRLA
EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEE
LDHPGRLSQLAVLDILPTYDYWERMNRAYALKIYHWAFLAQPAPLPETLIAGSGEFFLKQ
ECCCCCHHHHHHHHHCCCHHHHHHCCCEEEEEEEHHHHHCCCCCCCHHHHCCCCHHHHHH
KMASQTKSKTLDAIDPRALQHYLAPFRDPARIHAMCEDYRAGAYADYEIDKADLAAGRKI
HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCCHHHHHCCCCC
TTPMLALWGDAGIASAAATPLDTWQRWATNVRGVAVDSGHFLTEENPAETARLLREFLLS
CCHHHHHHCCCCHHHHCCCCHHHHHHHHCCCCEEEEECCCEECCCCHHHHHHHHHHHHHC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA