Click here to switch to the map view.

The map label for this gene is yjcC [C]

Identifier: 146342883

GI number: 146342883

Start: 6286989

End: 6288575

Strand: Direct

Name: yjcC [C]

Synonym: BRADO6063

Alternate gene names: 146342883

Gene position: 6286989-6288575 (Clockwise)

Preceding gene: 146342882

Following gene: 146342884

Centisome position: 84.31

GC content: 68.18

Gene sequence:

>1587_bases
ATGATTCGTATCTCCACGATTTTTATCGCCATCTGCATGGTTCTGGTCGCGGCATCGCTCGGCCTGATCCTGTATTCGGT
GGCCGGCATCAGTGGATCCGAATCGGCAATCGTGTCGCTGGCCGCGCTGACTTTTCTCATCCTCTACAACGCGGTGTCGA
TGCGGCTGCGCGACCGCTCCGACGTCGGCAGCCAGATCGCCGATCTGTCGCGCGGCACGGCGGACCTCGCCCGCCAGGTT
GCCGAGTTTGGCCGGCGGCTGTCGGCGGTCGAAGGCCGCATCGTGTCGTCGAGCTCGGTCAGCGCCGATCGCCTCCAGAG
CGTCGTTGGCGAGATCAACGAACTCGGCGGACTGATGAAGCAACTCGCTGTCACCGTCGCCCAGCATGAGGACCTTATCG
CCGCCATTCCGCAGCAGGTGGCGACCCCGGCCGCTGAGGCCCCGGCCGTTGCGCGCGAGGCCACCAGCCCGGCGCCCGCA
GCCCCCGTCGCATCCGCCGTCTATCCCGATCCGAAGGCCCTGCCCCCGGCCCCCTCGCATGCGAAGCCGAAGGAGGCGAC
CGCCACGTTCGGTGCGGCTCCGAGCATCGCCCCCGTGGTGCGGCCGCCGAACCCGCAGCCTATGGCTGCTGCGCCGGCTC
CGCCCGTAGCCACGCCTGCCGCTCCGGCCGTGCCGCGCAGCCAGCCCCAGATCCTCGCGGCCGTCAAAGGCGCGATCGAC
GAGAACCGCCTCGACATCTACCTCCAGCCGCTGGTGACGCTGCCCCAGCGCAAGGTGCGCTTCTACGAAGCGGTGACCCG
GCTGCGCGACGAGCGTGACCAGATCGTCGCGGCGGAGGACTTCATCGGCATCGCCGAGGCCGCAGGCCTGGTCGGGCGCA
TCGACCACATGGTGCTGCTTCGCTGCGTCCAGGTGCTGCGCCGCCTGATGGTGCGCAACAAAGACGTGGGGATCTTCTGC
AACCTGTCGTCCGCGACTCTGAGCAGCCCGGCGAGCTTTGCCCAGTGTCTGGATTTCCTCGAGGCCAACCGCGCGCTGGC
GCCCTCCTTCGTGCTCGAATTCAAGCAGTCGACCCTGCGCAGCCTGGGCCCGACCGAGACCGAGCACCTCGCGGCGCTGG
CGCAGCGCGGCTATCGCTTCTCGATCGACCATGTCACCGACCTCCGGTTCGAGCCGCGCGAGCTCGCCGATCGCGGCGTC
CGCTTCATCAAGGTGCCGGCCGCCCTGCTGCTCGACCCCAAGCAGAGCTCGGTGTCCGACATCCACCCGACTGATCTGTC
CGACCTGCTCGGCCGTTTTGGCATCGACCTGATCGCCGAGCGGATCGAGGGCGAGAACAGCGTCGTCGACCTGCTCGATT
ACGACGTTCGCTTCGGCCAGGGCTTCCTGTTCGCGCCGCCCCGCCCATTGCGACCAGAGGGCGCATCTGCTACCGGCGAG
GCCGCTGTCACCCCTCCGGGCGGGCAGGATATCAAGATTCAGGACCCCAATGCCGCCGGCACTCCCTCTCTCGATGCGTC
GAACGCCAATGCAGCGACGCGCAGCGGCAATGCCGCTCTCGCCCGTCGCATCGCCGGGACCATCTAA

Upstream 100 bases:

>100_bases
GCGGAAATCCACCGCGTTGTCCGGTATTTGAATCCTGCCGACTATCCTCGCGAATCAGCAGAAGTGCTAGGGTTGTGTTC
GGTTGGGAGCGTCGCGCAGC

Downstream 100 bases:

>100_bases
TTCGCGTCGCCGGCTATGACCGCGCTACGGTTCGAGGAGCGGTTGCGCGATCTGGTCGGCCGCAAGCGGGTGCTGCTGAG
CGACATCTGGGGCGTCGTCC

Product: EAL domain-containing protein

Products: NA

Alternate protein names: EAL Domain-Containing Protein; Cyclic Diguanylate Phosphodiesterase Domain Protein; Cylclic Diguanylate Phosphodiesterase; Diguanylate Phosphodiesterase Domain Protein; Diguanylate Cyclase/Phosphodiesterase; Diguanylate Cyclase; Diguanylate Cyclase/Phosphodiesterase With GAF Sensor; Diguanylate Phophodiesterase

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MIRISTIFIAICMVLVAASLGLILYSVAGISGSESAIVSLAALTFLILYNAVSMRLRDRSDVGSQIADLSRGTADLARQV
AEFGRRLSAVEGRIVSSSSVSADRLQSVVGEINELGGLMKQLAVTVAQHEDLIAAIPQQVATPAAEAPAVAREATSPAPA
APVASAVYPDPKALPPAPSHAKPKEATATFGAAPSIAPVVRPPNPQPMAAAPAPPVATPAAPAVPRSQPQILAAVKGAID
ENRLDIYLQPLVTLPQRKVRFYEAVTRLRDERDQIVAAEDFIGIAEAAGLVGRIDHMVLLRCVQVLRRLMVRNKDVGIFC
NLSSATLSSPASFAQCLDFLEANRALAPSFVLEFKQSTLRSLGPTETEHLAALAQRGYRFSIDHVTDLRFEPRELADRGV
RFIKVPAALLLDPKQSSVSDIHPTDLSDLLGRFGIDLIAERIEGENSVVDLLDYDVRFGQGFLFAPPRPLRPEGASATGE
AAVTPPGGQDIKIQDPNAAGTPSLDASNANAATRSGNAALARRIAGTI

Sequences:

>Translated_528_residues
MIRISTIFIAICMVLVAASLGLILYSVAGISGSESAIVSLAALTFLILYNAVSMRLRDRSDVGSQIADLSRGTADLARQV
AEFGRRLSAVEGRIVSSSSVSADRLQSVVGEINELGGLMKQLAVTVAQHEDLIAAIPQQVATPAAEAPAVAREATSPAPA
APVASAVYPDPKALPPAPSHAKPKEATATFGAAPSIAPVVRPPNPQPMAAAPAPPVATPAAPAVPRSQPQILAAVKGAID
ENRLDIYLQPLVTLPQRKVRFYEAVTRLRDERDQIVAAEDFIGIAEAAGLVGRIDHMVLLRCVQVLRRLMVRNKDVGIFC
NLSSATLSSPASFAQCLDFLEANRALAPSFVLEFKQSTLRSLGPTETEHLAALAQRGYRFSIDHVTDLRFEPRELADRGV
RFIKVPAALLLDPKQSSVSDIHPTDLSDLLGRFGIDLIAERIEGENSVVDLLDYDVRFGQGFLFAPPRPLRPEGASATGE
AAVTPPGGQDIKIQDPNAAGTPSLDASNANAATRSGNAALARRIAGTI
>Mature_528_residues
MIRISTIFIAICMVLVAASLGLILYSVAGISGSESAIVSLAALTFLILYNAVSMRLRDRSDVGSQIADLSRGTADLARQV
AEFGRRLSAVEGRIVSSSSVSADRLQSVVGEINELGGLMKQLAVTVAQHEDLIAAIPQQVATPAAEAPAVAREATSPAPA
APVASAVYPDPKALPPAPSHAKPKEATATFGAAPSIAPVVRPPNPQPMAAAPAPPVATPAAPAVPRSQPQILAAVKGAID
ENRLDIYLQPLVTLPQRKVRFYEAVTRLRDERDQIVAAEDFIGIAEAAGLVGRIDHMVLLRCVQVLRRLMVRNKDVGIFC
NLSSATLSSPASFAQCLDFLEANRALAPSFVLEFKQSTLRSLGPTETEHLAALAQRGYRFSIDHVTDLRFEPRELADRGV
RFIKVPAALLLDPKQSSVSDIHPTDLSDLLGRFGIDLIAERIEGENSVVDLLDYDVRFGQGFLFAPPRPLRPEGASATGE
AAVTPPGGQDIKIQDPNAAGTPSLDASNANAATRSGNAALARRIAGTI

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55797; Mature: 55797

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRISTIFIAICMVLVAASLGLILYSVAGISGSESAIVSLAALTFLILYNAVSMRLRDRS
CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVGSQIADLSRGTADLARQVAEFGRRLSAVEGRIVSSSSVSADRLQSVVGEINELGGLMK
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHH
QLAVTVAQHEDLIAAIPQQVATPAAEAPAVAREATSPAPAAPVASAVYPDPKALPPAPSH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCC
AKPKEATATFGAAPSIAPVVRPPNPQPMAAAPAPPVATPAAPAVPRSQPQILAAVKGAID
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
ENRLDIYLQPLVTLPQRKVRFYEAVTRLRDERDQIVAAEDFIGIAEAAGLVGRIDHMVLL
CCCEEEEEECHHHCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHH
RCVQVLRRLMVRNKDVGIFCNLSSATLSSPASFAQCLDFLEANRALAPSFVLEFKQSTLR
HHHHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
SLGPTETEHLAALAQRGYRFSIDHVTDLRFEPRELADRGVRFIKVPAALLLDPKQSSVSD
HCCCCHHHHHHHHHHCCCEEEECCHHCCCCCHHHHHHCCCEEEEECHHHEECCCCCCCCC
IHPTDLSDLLGRFGIDLIAERIEGENSVVDLLDYDVRFGQGFLFAPPRPLRPEGASATGE
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC
AAVTPPGGQDIKIQDPNAAGTPSLDASNANAATRSGNAALARRIAGTI
EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MIRISTIFIAICMVLVAASLGLILYSVAGISGSESAIVSLAALTFLILYNAVSMRLRDRS
CEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVGSQIADLSRGTADLARQVAEFGRRLSAVEGRIVSSSSVSADRLQSVVGEINELGGLMK
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHHHHHH
QLAVTVAQHEDLIAAIPQQVATPAAEAPAVAREATSPAPAAPVASAVYPDPKALPPAPSH
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCC
AKPKEATATFGAAPSIAPVVRPPNPQPMAAAPAPPVATPAAPAVPRSQPQILAAVKGAID
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
ENRLDIYLQPLVTLPQRKVRFYEAVTRLRDERDQIVAAEDFIGIAEAAGLVGRIDHMVLL
CCCEEEEEECHHHCCHHHHHHHHHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHH
RCVQVLRRLMVRNKDVGIFCNLSSATLSSPASFAQCLDFLEANRALAPSFVLEFKQSTLR
HHHHHHHHHHHCCCCCEEEEECCHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
SLGPTETEHLAALAQRGYRFSIDHVTDLRFEPRELADRGVRFIKVPAALLLDPKQSSVSD
HCCCCHHHHHHHHHHCCCEEEECCHHCCCCCHHHHHHCCCEEEEECHHHEECCCCCCCCC
IHPTDLSDLLGRFGIDLIAERIEGENSVVDLLDYDVRFGQGFLFAPPRPLRPEGASATGE
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCEEECCCCCCCCCCCCCCCC
AAVTPPGGQDIKIQDPNAAGTPSLDASNANAATRSGNAALARRIAGTI
EEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA