| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is napA [H]
Identifier: 146342744
GI number: 146342744
Start: 6133986
End: 6136490
Strand: Direct
Name: napA [H]
Synonym: BRADO5916
Alternate gene names: 146342744
Gene position: 6133986-6136490 (Clockwise)
Preceding gene: 146342743
Following gene: 146342745
Centisome position: 82.26
GC content: 64.67
Gene sequence:
>2505_bases ATGACCGAACCGAAGATCGATCGCCGCCAGTTGCTGAAGCTGGAAGCCGCCGCCATTGCCGCGGCCGCCGCCGGCATGCC CACAGTCGCGCGTGCCGCGAACCTCGTCACCGAGCGCGAAGCGACCGAGTTGAAATGGGACAAGGCCGCCTGCCGCTTCT GCGGCACCGGCTGCAGCGTGATGGTTGCCACCAAGGACAACCGCGTCGTCGCCACCCACGGCGACATCAAGGCCGAGGTC AATCGCGGCCTCAACTGCGTCAAGGGCTACTTCCTGTCGAAGATCATGTACGGCCATGACCGCCTGACGCATCCGATGCT GCGCAAGACAGGCGGCCAATACGACAAGAACGGCGAGTTCACACCCGTGTCATGGGACGAAGCTTTCGACGTCATGGCGC TGAAGTTCAAGGACGCGTTGAAGAAGCGCGGCCCCTCCGGCGTCGGCATGTTCGGCTCGGGCCAGTGGACGATCTGGGAA GGCTATGCCGCATCAAAACTGTTCAAGGCCGGCTTCCGCACCAACAACATCGACCCCAATGCGCGGCACTGCATGGCGTC GGCCGTCGCCGGCATGATGCGCACCTTCGGCATCGACGAGCCGGCCGGCTGCTACGACGACATCGAGGCCACCGATGCCT TCGTGCTGTGGGGCTCCAACATGGCGGAGATGCATCCGATCCTGTGGACCCGCGTGACCGACCGACGGCTCTCGGCGCCG CATGTCAAGGTCGCCGTGCTCTCGACCTTCGAGCACCGCTCGTTCGACCTCGCCGATGTCGGCATGGTGTTCAAGCCGCA GACCGACCTCTACATCCTCAACGCCATCGCCAACCACATCATCTCCACAGGCCGCGTCAACAAGGACTTCGTGTCGGCGC ACACCGTGTTCAAGAAGGGACAGACCGACATCGGCTACGGCCTGCGGCCCGAGCATCCGCTGCAGAAGAAGGCGACCGGC GCGGCCAAGGCCAACGACGCCACCGACATCTCATTCGACGAGTATGCGAAGTTCGTGTCCGACTACACGCTGGAGAAGGC CGCCGACATGTCCGGCGTGCCGTTGAACCGGCTGCAGGCGCTGGCCGAGCTCTATGCCGATCCGAAGACCAAGGTGGTCT CGTTCTGGACCATGGGCTTCAACCAGCACACCCGCGGCGTCTGGTGCAACAACCTCGTCTACAACATCCACCTGCTGACG GGGAAGATCGCCGAGGCCGGCAACAGTCCGTTCTCGCTGACCGGCCAGCCCTCGGCCTGCGGCACCGCGCGCGAGGTCGG CACCTTCTCGCACCGGCTGCCCGCCGACATGGTCGTCACCAACAAGGAGCATCGCACCAAGGCCGAGCACATCTGGCAGC TGCCGGAGGGCACGATCCCCGACAAGCCCGGCTATCACGCCGTGCTGCAGAGCCGGATGCTGAAGGACGGCCTGCTCAAC GCCTATTGGGTGCAGGTCAACAACAACCTCCAGGCCGGCCCCAACGCCAACGAAGAGACCTATCCAGGCTTCCGCAACCC CGACAATTTCATCGTCGTCTCCGACGCCTATCCATCGGTCACCGCGCTCGCCGCCGATCTCATCCTGCCGACCGCGATGT GGGTGGAGAAGGAAGGTGCCTATGGCAATGCCGAGCGCCGCACCCAGTTCTGGCATCAGCTGGTGTCCGCGCCGGGCGAG GCCCGCTCCGACCTGTGGCAGCTGATGGAGTTTTCCAAGCGCTTCAAGATCGAGGACGTCTGGCCCGAGGAGCTGATCGC GAAGAAGCCCGACGTGCGCGGCAAGACGCTGTTCGACGTGCTCTACAAGAACGGCCAAGTCGACAAATTCCCGCTCGACC AGATCGAGCCGGGCTACGCCAACGACGAATCCAAGGCGTTCGGCTTCTACGTCCACAAGGGCCTGTTCGAGGAATACGCT TCGTTCGGCCGCGGCCACGGCCACGACCTCGCGCCGTTCGAGGCCTATCACAAAGAGCGCGGCCTGCGCTGGCCCGTGGT CGACGGCAAGGAGACGCGCTGGCGTTTCCGCGAAGGCTCCGACCCCTACGTGAAGGCCGGCACCGGCGTGCAGTTTTACG GTTTCCCGGACGGCAAGGCCCGCATCTTCGCCCTGCCATACGAGCCGCCGGCGGAATCGCCCGACAAGGATTATCCGTTC TGGCTGTCGACCGGCCGCGTCGTCGAGCACTGGCATTCCGGCACGATGACGCGCCGCGTGCCCGAGCTCTACAAGGCCTT CCCCGAAGCCGTCTGCTTCATGCATCCCGACGATGCGCAGGAGGCAAACTTGCGGCGCGGCGATGAAGTGAAAGTCGCCT CGCGGCGCGGCTTCATCCGCGCCCGCGTCGAAACGCGCGGCCGTGACAAGCCGCCACGCGGGCTCGTATTCGTGCCGTGG TTCGACGAATCCAAGCTGATCAACAAGGTGACGCTCGACGCCACCGATCCGATCTCGCTGCAGACCGACTACAAGAAATG CGCCGTGCGCATCGAGCGGGTGTGA
Upstream 100 bases:
>100_bases GCTCGGCGCCACCATGAACCGCATCGGGCTGCTGCCGCACGTGCACTCCGCCTGCCTCGTCTTCCACGCCATCGACGCCG GCTAATCAACCGAGATCATC
Downstream 100 bases:
>100_bases CCGACATGATCAAGAAACTTGCGATGATGCTGCTCGCGGCCAGCCTGGCGGCCGGCTCGAGCGCCCTGCTCGCCCAGAGC GTCTCGTCGTCGCTGCGCGG
Product: nitrate reductase catalytic subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 834; Mature: 833
Protein sequence:
>834_residues MTEPKIDRRQLLKLEAAAIAAAAAGMPTVARAANLVTEREATELKWDKAACRFCGTGCSVMVATKDNRVVATHGDIKAEV NRGLNCVKGYFLSKIMYGHDRLTHPMLRKTGGQYDKNGEFTPVSWDEAFDVMALKFKDALKKRGPSGVGMFGSGQWTIWE GYAASKLFKAGFRTNNIDPNARHCMASAVAGMMRTFGIDEPAGCYDDIEATDAFVLWGSNMAEMHPILWTRVTDRRLSAP HVKVAVLSTFEHRSFDLADVGMVFKPQTDLYILNAIANHIISTGRVNKDFVSAHTVFKKGQTDIGYGLRPEHPLQKKATG AAKANDATDISFDEYAKFVSDYTLEKAADMSGVPLNRLQALAELYADPKTKVVSFWTMGFNQHTRGVWCNNLVYNIHLLT GKIAEAGNSPFSLTGQPSACGTAREVGTFSHRLPADMVVTNKEHRTKAEHIWQLPEGTIPDKPGYHAVLQSRMLKDGLLN AYWVQVNNNLQAGPNANEETYPGFRNPDNFIVVSDAYPSVTALAADLILPTAMWVEKEGAYGNAERRTQFWHQLVSAPGE ARSDLWQLMEFSKRFKIEDVWPEELIAKKPDVRGKTLFDVLYKNGQVDKFPLDQIEPGYANDESKAFGFYVHKGLFEEYA SFGRGHGHDLAPFEAYHKERGLRWPVVDGKETRWRFREGSDPYVKAGTGVQFYGFPDGKARIFALPYEPPAESPDKDYPF WLSTGRVVEHWHSGTMTRRVPELYKAFPEAVCFMHPDDAQEANLRRGDEVKVASRRGFIRARVETRGRDKPPRGLVFVPW FDESKLINKVTLDATDPISLQTDYKKCAVRIERV
Sequences:
>Translated_834_residues MTEPKIDRRQLLKLEAAAIAAAAAGMPTVARAANLVTEREATELKWDKAACRFCGTGCSVMVATKDNRVVATHGDIKAEV NRGLNCVKGYFLSKIMYGHDRLTHPMLRKTGGQYDKNGEFTPVSWDEAFDVMALKFKDALKKRGPSGVGMFGSGQWTIWE GYAASKLFKAGFRTNNIDPNARHCMASAVAGMMRTFGIDEPAGCYDDIEATDAFVLWGSNMAEMHPILWTRVTDRRLSAP HVKVAVLSTFEHRSFDLADVGMVFKPQTDLYILNAIANHIISTGRVNKDFVSAHTVFKKGQTDIGYGLRPEHPLQKKATG AAKANDATDISFDEYAKFVSDYTLEKAADMSGVPLNRLQALAELYADPKTKVVSFWTMGFNQHTRGVWCNNLVYNIHLLT GKIAEAGNSPFSLTGQPSACGTAREVGTFSHRLPADMVVTNKEHRTKAEHIWQLPEGTIPDKPGYHAVLQSRMLKDGLLN AYWVQVNNNLQAGPNANEETYPGFRNPDNFIVVSDAYPSVTALAADLILPTAMWVEKEGAYGNAERRTQFWHQLVSAPGE ARSDLWQLMEFSKRFKIEDVWPEELIAKKPDVRGKTLFDVLYKNGQVDKFPLDQIEPGYANDESKAFGFYVHKGLFEEYA SFGRGHGHDLAPFEAYHKERGLRWPVVDGKETRWRFREGSDPYVKAGTGVQFYGFPDGKARIFALPYEPPAESPDKDYPF WLSTGRVVEHWHSGTMTRRVPELYKAFPEAVCFMHPDDAQEANLRRGDEVKVASRRGFIRARVETRGRDKPPRGLVFVPW FDESKLINKVTLDATDPISLQTDYKKCAVRIERV >Mature_833_residues TEPKIDRRQLLKLEAAAIAAAAAGMPTVARAANLVTEREATELKWDKAACRFCGTGCSVMVATKDNRVVATHGDIKAEVN RGLNCVKGYFLSKIMYGHDRLTHPMLRKTGGQYDKNGEFTPVSWDEAFDVMALKFKDALKKRGPSGVGMFGSGQWTIWEG YAASKLFKAGFRTNNIDPNARHCMASAVAGMMRTFGIDEPAGCYDDIEATDAFVLWGSNMAEMHPILWTRVTDRRLSAPH VKVAVLSTFEHRSFDLADVGMVFKPQTDLYILNAIANHIISTGRVNKDFVSAHTVFKKGQTDIGYGLRPEHPLQKKATGA AKANDATDISFDEYAKFVSDYTLEKAADMSGVPLNRLQALAELYADPKTKVVSFWTMGFNQHTRGVWCNNLVYNIHLLTG KIAEAGNSPFSLTGQPSACGTAREVGTFSHRLPADMVVTNKEHRTKAEHIWQLPEGTIPDKPGYHAVLQSRMLKDGLLNA YWVQVNNNLQAGPNANEETYPGFRNPDNFIVVSDAYPSVTALAADLILPTAMWVEKEGAYGNAERRTQFWHQLVSAPGEA RSDLWQLMEFSKRFKIEDVWPEELIAKKPDVRGKTLFDVLYKNGQVDKFPLDQIEPGYANDESKAFGFYVHKGLFEEYAS FGRGHGHDLAPFEAYHKERGLRWPVVDGKETRWRFREGSDPYVKAGTGVQFYGFPDGKARIFALPYEPPAESPDKDYPFW LSTGRVVEHWHSGTMTRRVPELYKAFPEAVCFMHPDDAQEANLRRGDEVKVASRRGFIRARVETRGRDKPPRGLVFVPWF DESKLINKVTLDATDPISLQTDYKKCAVRIERV
Specific function: Catalytic subunit of the periplasmic nitrate reductase (NAP). Only expressed at high levels during aerobic growth. NapAB complex receives electrons from the membrane-anchored tetraheme protein napC, thus allowing electron flow between membrane and peripla
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/napA/narB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788534, Length=833, Percent_Identity=68.7875150060024, Blast_Score=1219, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=561, Percent_Identity=26.0249554367201, Blast_Score=176, Evalue=7e-45, Organism=Escherichia coli, GI3868720, Length=659, Percent_Identity=22.3065250379363, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI3868719, Length=657, Percent_Identity=21.0045662100457, Blast_Score=97, Evalue=4e-21, Organism=Escherichia coli, GI1787870, Length=683, Percent_Identity=23.5724743777452, Blast_Score=83, Evalue=7e-17, Organism=Escherichia coli, GI87081797, Length=894, Percent_Identity=21.5883668903803, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI171474008, Length=435, Percent_Identity=25.2873563218391, Blast_Score=72, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR010051 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.7.99.4 [H]
Molecular weight: Translated: 93493; Mature: 93362
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: PS00551 MOLYBDOPTERIN_PROK_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPKIDRRQLLKLEAAAIAAAAAGMPTVARAANLVTEREATELKWDKAACRFCGTGCSV CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE MVATKDNRVVATHGDIKAEVNRGLNCVKGYFLSKIMYGHDRLTHPMLRKTGGQYDKNGEF EEEECCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCCCCC TPVSWDEAFDVMALKFKDALKKRGPSGVGMFGSGQWTIWEGYAASKLFKAGFRTNNIDPN CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCH ARHCMASAVAGMMRTFGIDEPAGCYDDIEATDAFVLWGSNMAEMHPILWTRVTDRRLSAP HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCHHEEEECCCCCCCC HVKVAVLSTFEHRSFDLADVGMVFKPQTDLYILNAIANHIISTGRVNKDFVSAHTVFKKG CEEEEEEEHHCCCCCCHHHCCEEECCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCC QTDIGYGLRPEHPLQKKATGAAKANDATDISFDEYAKFVSDYTLEKAADMSGVPLNRLQA CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LAELYADPKTKVVSFWTMGFNQHTRGVWCNNLVYNIHLLTGKIAEAGNSPFSLTGQPSAC HHHHHCCCCCEEEEEEEECCCCCCCCEEECCEEEEEEEEECHHHHCCCCCEEECCCCCCC GTAREVGTFSHRLPADMVVTNKEHRTKAEHIWQLPEGTIPDKPGYHAVLQSRMLKDGLLN CCHHHHCCHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCE AYWVQVNNNLQAGPNANEETYPGFRNPDNFIVVSDAYPSVTALAADLILPTAMWVEKEGA EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHEEECCCC YGNAERRTQFWHQLVSAPGEARSDLWQLMEFSKRFKIEDVWPEELIAKKPDVRGKTLFDV CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHH LYKNGQVDKFPLDQIEPGYANDESKAFGFYVHKGLFEEYASFGRGHGHDLAPFEAYHKER HHCCCCCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC GLRWPVVDGKETRWRFREGSDPYVKAGTGVQFYGFPDGKARIFALPYEPPAESPDKDYPF CCCCCCCCCCCCCEEECCCCCCEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCE WLSTGRVVEHWHSGTMTRRVPELYKAFPEAVCFMHPDDAQEANLRRGDEVKVASRRGFIR EEECCHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCEEEECCCCEEE ARVETRGRDKPPRGLVFVPWFDESKLINKVTLDATDPISLQTDYKKCAVRIERV EEEHHCCCCCCCCCEEEEEECCCCCHHEEEEECCCCCCCCCCCHHHHHEEEECC >Mature Secondary Structure TEPKIDRRQLLKLEAAAIAAAAAGMPTVARAANLVTEREATELKWDKAACRFCGTGCSV CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE MVATKDNRVVATHGDIKAEVNRGLNCVKGYFLSKIMYGHDRLTHPMLRKTGGQYDKNGEF EEEECCCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHCCHHHCCHHHHHCCCCCCCCCCC TPVSWDEAFDVMALKFKDALKKRGPSGVGMFGSGQWTIWEGYAASKLFKAGFRTNNIDPN CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCH ARHCMASAVAGMMRTFGIDEPAGCYDDIEATDAFVLWGSNMAEMHPILWTRVTDRRLSAP HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCHHEEEECCCCCCCC HVKVAVLSTFEHRSFDLADVGMVFKPQTDLYILNAIANHIISTGRVNKDFVSAHTVFKKG CEEEEEEEHHCCCCCCHHHCCEEECCCCCEEHHHHHHHHHHHCCCCCHHHHHHHHHHHCC QTDIGYGLRPEHPLQKKATGAAKANDATDISFDEYAKFVSDYTLEKAADMSGVPLNRLQA CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH LAELYADPKTKVVSFWTMGFNQHTRGVWCNNLVYNIHLLTGKIAEAGNSPFSLTGQPSAC HHHHHCCCCCEEEEEEEECCCCCCCCEEECCEEEEEEEEECHHHHCCCCCEEECCCCCCC GTAREVGTFSHRLPADMVVTNKEHRTKAEHIWQLPEGTIPDKPGYHAVLQSRMLKDGLLN CCHHHHCCHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCE AYWVQVNNNLQAGPNANEETYPGFRNPDNFIVVSDAYPSVTALAADLILPTAMWVEKEGA EEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHEEECCCC YGNAERRTQFWHQLVSAPGEARSDLWQLMEFSKRFKIEDVWPEELIAKKPDVRGKTLFDV CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCHHHHHH LYKNGQVDKFPLDQIEPGYANDESKAFGFYVHKGLFEEYASFGRGHGHDLAPFEAYHKER HHCCCCCCCCCHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC GLRWPVVDGKETRWRFREGSDPYVKAGTGVQFYGFPDGKARIFALPYEPPAESPDKDYPF CCCCCCCCCCCCCEEECCCCCCEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCE WLSTGRVVEHWHSGTMTRRVPELYKAFPEAVCFMHPDDAQEANLRRGDEVKVASRRGFIR EEECCHHHHHHCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCEEEECCCCEEE ARVETRGRDKPPRGLVFVPWFDESKLINKVTLDATDPISLQTDYKKCAVRIERV EEEHHCCCCCCCCCEEEEEECCCCCHHEEEEECCCCCCCCCCCHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]