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The map label for this gene is flgD [H]

Identifier: 146342727

GI number: 146342727

Start: 6116371

End: 6117066

Strand: Direct

Name: flgD [H]

Synonym: BRADO5897

Alternate gene names: 146342727

Gene position: 6116371-6117066 (Clockwise)

Preceding gene: 146342726

Following gene: 146342728

Centisome position: 82.03

GC content: 65.8

Gene sequence:

>696_bases
ATGGCCATCGGCGACGCAATCACGGCAAGCCCCGCCGTCTCGGGCACGACCAAGACGACCACCACGTCATCGGGCAGCGG
CCTGAGCGGGAGCGCGACCTCGACCATCGCGGGCAACTTCCAGACCTTCCTGACGCTGCTGACGACGCAGCTGCAGAACC
AGAACCCGCTCGATCCGCTGGACACCAACCAGTTCACCCAGCAGCTCGTGCAGTTCGCCGGCGTCGAGCAGCAGCTCAAG
ACCAACGACCAGCTGGCGTCCCTGCTCACGATGCAGCAGACGACGCAGGCCACCCAGGCGCTCGCCTTCGTCGGCAAGAC
CGCCGTGGTCAACGGCTCGCAGACAGCCCTGGCGAGCGGCAAGGCCGATTGGAACGTCAGCATCCCAAAGGACTGCACGA
TGACGGCGACGATCACCAACAGCGTCGGCCAGACCGTCTTCAGCGGCACCTACAACGGCACCGCCGGCGACAACCAGCCC
TACACATGGAACGGCCAGGGCAGCGACGGCACGCAATGGCCCGACGGCCAGTACAAGCTGACGATCACCGCCAAGGACAG
CTCCGGCAATCCCGTGGCGGTCTCGACTCAGGTCCAGGGCACGGTGTCTTCGGTCGATCTCACCCAGCAGCCGCCGCTGC
TGTCGATCGGCGGCCAGACCTACACCGTCAACCAGATCCAGCGCATCGTTAGCTAG

Upstream 100 bases:

>100_bases
CGAGGACGAAAACGTCCCGGTCCAGCTCGCCGGACGGTCCTATGGACGGATGTTCGGCGCGCAGGGCGGTGTCGATATCA
GGGTTTAACAGGAGGCTTCC

Downstream 100 bases:

>100_bases
GCCTTAACGCCCTGCCCCGATCTTAAGACGACGGATACGCTTGCGGTTGAACCTGAGCTTCAAGCTCAACCGATATGGCG
TCATGCCGGCGTAAACGCCG

Product: putative flagellar basal-body rod modification protein FlgD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MAIGDAITASPAVSGTTKTTTTSSGSGLSGSATSTIAGNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVEQQLK
TNDQLASLLTMQQTTQATQALAFVGKTAVVNGSQTALASGKADWNVSIPKDCTMTATITNSVGQTVFSGTYNGTAGDNQP
YTWNGQGSDGTQWPDGQYKLTITAKDSSGNPVAVSTQVQGTVSSVDLTQQPPLLSIGGQTYTVNQIQRIVS

Sequences:

>Translated_231_residues
MAIGDAITASPAVSGTTKTTTTSSGSGLSGSATSTIAGNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVEQQLK
TNDQLASLLTMQQTTQATQALAFVGKTAVVNGSQTALASGKADWNVSIPKDCTMTATITNSVGQTVFSGTYNGTAGDNQP
YTWNGQGSDGTQWPDGQYKLTITAKDSSGNPVAVSTQVQGTVSSVDLTQQPPLLSIGGQTYTVNQIQRIVS
>Mature_230_residues
AIGDAITASPAVSGTTKTTTTSSGSGLSGSATSTIAGNFQTFLTLLTTQLQNQNPLDPLDTNQFTQQLVQFAGVEQQLKT
NDQLASLLTMQQTTQATQALAFVGKTAVVNGSQTALASGKADWNVSIPKDCTMTATITNSVGQTVFSGTYNGTAGDNQPY
TWNGQGSDGTQWPDGQYKLTITAKDSSGNPVAVSTQVQGTVSSVDLTQQPPLLSIGGQTYTVNQIQRIVS

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=173, Percent_Identity=29.4797687861272, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24008; Mature: 23876

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIGDAITASPAVSGTTKTTTTSSGSGLSGSATSTIAGNFQTFLTLLTTQLQNQNPLDPL
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCC
DTNQFTQQLVQFAGVEQQLKTNDQLASLLTMQQTTQATQALAFVGKTAVVNGSQTALASG
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEECC
KADWNVSIPKDCTMTATITNSVGQTVFSGTYNGTAGDNQPYTWNGQGSDGTQWPDGQYKL
CCCEEEECCCCCEEEEEECCHHCHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEE
TITAKDSSGNPVAVSTQVQGTVSSVDLTQQPPLLSIGGQTYTVNQIQRIVS
EEEEECCCCCEEEEEEEECCCEEECCCCCCCCEEEECCCEEEHHHHHHHHC
>Mature Secondary Structure 
AIGDAITASPAVSGTTKTTTTSSGSGLSGSATSTIAGNFQTFLTLLTTQLQNQNPLDPL
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCC
DTNQFTQQLVQFAGVEQQLKTNDQLASLLTMQQTTQATQALAFVGKTAVVNGSQTALASG
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEECC
KADWNVSIPKDCTMTATITNSVGQTVFSGTYNGTAGDNQPYTWNGQGSDGTQWPDGQYKL
CCCEEEECCCCCEEEEEECCHHCHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEE
TITAKDSSGNPVAVSTQVQGTVSSVDLTQQPPLLSIGGQTYTVNQIQRIVS
EEEEECCCCCEEEEEEEECCCEEECCCCCCCCEEEECCCEEEHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]