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The map label for this gene is yfdE [H]

Identifier: 146342163

GI number: 146342163

Start: 5527834

End: 5529117

Strand: Reverse

Name: yfdE [H]

Synonym: BRADO5313

Alternate gene names: 146342163

Gene position: 5529117-5527834 (Counterclockwise)

Preceding gene: 146342164

Following gene: 146342161

Centisome position: 74.15

GC content: 63.63

Gene sequence:

>1284_bases
ATGCCCATTCAGGTCGCGCTACAGGACCGCAACCCGCGCCCGGCTGATGCGCCGGCAGCTTTGGCTGGCCTGCTCGTGAT
CGATTTCACGCGCGTGGTGGCCGGGCCGGCGTGTACGCAAACCTTGGCGGACTTCGGTGCCGAGGTGATCAAGATCGAGC
AGCCGATCAAGGGAGATGACACGCGGGCCTACGAGCATGCCGAGCTCGGTGGCGAAAGCGCAGCTTTTCTCAGCCTCAAC
CGCAACAAGCAAGGGATGGTGCTGGACCTCACGACTCCGGAAGCGAGAAATATTGCGCGCGCGCTCATCGCCAAGGCCGA
TGTCGTCGTGGAGAATTTTTCGTCGCATGTCATGGAGAAGCATGGTCTGGACTATCCGACGGTGTCGAGCGCCAATCCGA
GCCTGATCTATTGCTCGATCTCGGCCTATGGACGCACCGGTCCGTTTGCGTGGCGATCGGGTTTCGATCCGATCACCCAG
GCCGAAAGCGGTTTCATGTCGCTCAACGGTTTTCCCGATGGTCCACCAGTGCGGACAGGTCCCCCCATCGTCGACTTCGC
TACCGGCATGTCGGCCTGCAATGCCATCCTGCTGGCGCTTGCGGCACGACAACGGCTCGGCCGGGGGCAGCACGTCGAGG
TGGCCTTGTTCGACACGGCTCTGGCGCTGACAGGCTTTTCTGGAATGGCTTATCTGATGAGCGGCGTGAATCCCACGCGC
ACTGGAAACTCGCCGAACGATTCGCCGACGGTCGGTGTGTTCGAAGCGTCGGATGGTCCGCTCTATGTGGCCTGCGCCAA
CGATCGGCTCTACCATCGGCTGGTCGCCGAGGTGCTCGAGCGCCCGGATCTGCTGAGCGATCCGCGCTTCGCGACGAGGA
AAGCACGCTGGAGCAACCGCGCCCAACTGCGTGGTATCCTCGCCGACATCTTTGCGGCCAAGCAGATGGAGGTGTGGATC
TCGCGGATGAACGATGCCGGGGTCCCCGTCGGCCGCGTCCGAACGGTGGCACAGGCCTTCGGCGCGCCAGAGGTGCGAGA
GCGCAACCGGATCTGTCGCATCCCACACATGACGGCAGGTGCCGTACCCAATATCGAGCCAGCGATCAGCATGCAGATGA
CGCCCGCCGTCACGCCCCGAGCGGCGCCGCGGCTCGGCGAGCACACGGCTACTGTTCTACGTGACAGGCTGGGATACTCC
GAGCAGGAGATCGAAGCGCTTCGCGATCGGGGCGCCTTCGGTCCGGACGCCCCGGCTATCCAAGGTCAGCCGACTGACAA
ATAG

Upstream 100 bases:

>100_bases
CGATGATTCAAGTCACCGTGCTCCGGGGGAGGCTCGCGCAACCGCGTCCATCCGCCGGCCAACGATCGCTTGAGACGATC
GACAAGGGAAGGGAACCTCA

Downstream 100 bases:

>100_bases
CTGGCCAACGCCGGCGATCGACCGACTGGTTCATGCGGCCGACGTTTGATCCTCAGCTCGCCTTCGCCATGTCCTCGTCT
TCCGGCGAATTCAGGTACAT

Product: putative Formyl-coenzyme A transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MPIQVALQDRNPRPADAPAALAGLLVIDFTRVVAGPACTQTLADFGAEVIKIEQPIKGDDTRAYEHAELGGESAAFLSLN
RNKQGMVLDLTTPEARNIARALIAKADVVVENFSSHVMEKHGLDYPTVSSANPSLIYCSISAYGRTGPFAWRSGFDPITQ
AESGFMSLNGFPDGPPVRTGPPIVDFATGMSACNAILLALAARQRLGRGQHVEVALFDTALALTGFSGMAYLMSGVNPTR
TGNSPNDSPTVGVFEASDGPLYVACANDRLYHRLVAEVLERPDLLSDPRFATRKARWSNRAQLRGILADIFAAKQMEVWI
SRMNDAGVPVGRVRTVAQAFGAPEVRERNRICRIPHMTAGAVPNIEPAISMQMTPAVTPRAAPRLGEHTATVLRDRLGYS
EQEIEALRDRGAFGPDAPAIQGQPTDK

Sequences:

>Translated_427_residues
MPIQVALQDRNPRPADAPAALAGLLVIDFTRVVAGPACTQTLADFGAEVIKIEQPIKGDDTRAYEHAELGGESAAFLSLN
RNKQGMVLDLTTPEARNIARALIAKADVVVENFSSHVMEKHGLDYPTVSSANPSLIYCSISAYGRTGPFAWRSGFDPITQ
AESGFMSLNGFPDGPPVRTGPPIVDFATGMSACNAILLALAARQRLGRGQHVEVALFDTALALTGFSGMAYLMSGVNPTR
TGNSPNDSPTVGVFEASDGPLYVACANDRLYHRLVAEVLERPDLLSDPRFATRKARWSNRAQLRGILADIFAAKQMEVWI
SRMNDAGVPVGRVRTVAQAFGAPEVRERNRICRIPHMTAGAVPNIEPAISMQMTPAVTPRAAPRLGEHTATVLRDRLGYS
EQEIEALRDRGAFGPDAPAIQGQPTDK
>Mature_426_residues
PIQVALQDRNPRPADAPAALAGLLVIDFTRVVAGPACTQTLADFGAEVIKIEQPIKGDDTRAYEHAELGGESAAFLSLNR
NKQGMVLDLTTPEARNIARALIAKADVVVENFSSHVMEKHGLDYPTVSSANPSLIYCSISAYGRTGPFAWRSGFDPITQA
ESGFMSLNGFPDGPPVRTGPPIVDFATGMSACNAILLALAARQRLGRGQHVEVALFDTALALTGFSGMAYLMSGVNPTRT
GNSPNDSPTVGVFEASDGPLYVACANDRLYHRLVAEVLERPDLLSDPRFATRKARWSNRAQLRGILADIFAAKQMEVWIS
RMNDAGVPVGRVRTVAQAFGAPEVRERNRICRIPHMTAGAVPNIEPAISMQMTPAVTPRAAPRLGEHTATVLRDRLGYSE
QEIEALRDRGAFGPDAPAIQGQPTDK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=391, Percent_Identity=32.7365728900256, Blast_Score=240, Evalue=2e-63,
Organism=Homo sapiens, GI300863124, Length=417, Percent_Identity=30.6954436450839, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI300863126, Length=391, Percent_Identity=30.1790281329923, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI13376042, Length=417, Percent_Identity=28.0575539568345, Blast_Score=189, Evalue=3e-48,
Organism=Homo sapiens, GI42794625, Length=392, Percent_Identity=27.5510204081633, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266456254, Length=392, Percent_Identity=27.5510204081633, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI266458393, Length=269, Percent_Identity=29.368029739777, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=29.2307692307692, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=34.4827586206897, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=34.4827586206897, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI87082093, Length=382, Percent_Identity=36.3874345549738, Blast_Score=244, Evalue=9e-66,
Organism=Escherichia coli, GI1788717, Length=422, Percent_Identity=29.3838862559242, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1786222, Length=418, Percent_Identity=23.6842105263158, Blast_Score=91, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=305, Percent_Identity=26.8852459016393, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=308, Percent_Identity=26.2987012987013, Blast_Score=85, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=34.3434343434343, Blast_Score=226, Evalue=3e-59,
Organism=Drosophila melanogaster, GI24585488, Length=405, Percent_Identity=25.679012345679, Blast_Score=105, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45895; Mature: 45764

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIQVALQDRNPRPADAPAALAGLLVIDFTRVVAGPACTQTLADFGAEVIKIEQPIKGDD
CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCC
TRAYEHAELGGESAAFLSLNRNKQGMVLDLTTPEARNIARALIAKADVVVENFSSHVMEK
CCHHHHHHCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLDYPTVSSANPSLIYCSISAYGRTGPFAWRSGFDPITQAESGFMSLNGFPDGPPVRTG
HCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCHHHHCCCCEEECCCCCCCCCCCC
PPIVDFATGMSACNAILLALAARQRLGRGQHVEVALFDTALALTGFSGMAYLMSGVNPTR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCHHHHHHCCCCCCC
TGNSPNDSPTVGVFEASDGPLYVACANDRLYHRLVAEVLERPDLLSDPRFATRKARWSNR
CCCCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCH
AQLRGILADIFAAKQMEVWISRMNDAGVPVGRVRTVAQAFGAPEVRERNRICRIPHMTAG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHCCCEEECCCCCCC
AVPNIEPAISMQMTPAVTPRAAPRLGEHTATVLRDRLGYSEQEIEALRDRGAFGPDAPAI
CCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
QGQPTDK
CCCCCCC
>Mature Secondary Structure 
PIQVALQDRNPRPADAPAALAGLLVIDFTRVVAGPACTQTLADFGAEVIKIEQPIKGDD
CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEECCCCCCCC
TRAYEHAELGGESAAFLSLNRNKQGMVLDLTTPEARNIARALIAKADVVVENFSSHVMEK
CCHHHHHHCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLDYPTVSSANPSLIYCSISAYGRTGPFAWRSGFDPITQAESGFMSLNGFPDGPPVRTG
HCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCHHHHCCCCEEECCCCCCCCCCCC
PPIVDFATGMSACNAILLALAARQRLGRGQHVEVALFDTALALTGFSGMAYLMSGVNPTR
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCHHHHHHCCCCCCC
TGNSPNDSPTVGVFEASDGPLYVACANDRLYHRLVAEVLERPDLLSDPRFATRKARWSNR
CCCCCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCH
AQLRGILADIFAAKQMEVWISRMNDAGVPVGRVRTVAQAFGAPEVRERNRICRIPHMTAG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHCCCEEECCCCCCC
AVPNIEPAISMQMTPAVTPRAAPRLGEHTATVLRDRLGYSEQEIEALRDRGAFGPDAPAI
CCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
QGQPTDK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]