| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yoaE [H]
Identifier: 146342144
GI number: 146342144
Start: 5506356
End: 5508443
Strand: Reverse
Name: yoaE [H]
Synonym: BRADO5292
Alternate gene names: 146342144
Gene position: 5508443-5506356 (Counterclockwise)
Preceding gene: 146342149
Following gene: 146342143
Centisome position: 73.87
GC content: 63.03
Gene sequence:
>2088_bases ATGAACCAGCAGCCTCGCGTCGATATCCGCCATTCCACGTGTCCGCACGATTGTCCCTCAGCCTGTGCGCTCGATGTCGA GGTGATCGACCAGAGCACGATCGGGCGGGTTCGCGGCTCGAAGCGCCAGACCTATACGGCCGGTGTGGTCTGCGCCAAGG TGGCTCGATACGCCGAGCGCATTCATCACGCCGAACGACTGACCTTTCCCCTGCGCCGCATCGGGCCGAAAGGTTCGGGG CAGTTCGCGCGGATGTCCTGGGACGACGCGCTCGACGAGATCGCTGAGCGTTTTCTGCTGACGGAGCGCGAGTTCGGGTC GCAGGCGGTGTGGCCTTATTATTATGCGGGGACCATGGGACTGGTGATGCGCGACGGCCTCAACCGTCTGACGCATGTGA AGAGGTACTCGCGTTTCTATTCGACGATCTGCGCCAATGTCGCGCGTGTGGGATTTGCAATAGGGACAGGCAAGATCGCA GGCGTTGATCCCCGTGAGATGGCGCTGTCCGATCTGGTGGTGATCTGGGGCACGAACCCGGTGAACACGCAGGTCAATGT CATGACTCATGCCGCTCGGGCGCGGAAGGAGCGCGGGGCAAAGATCGCCGCCGTCGACATCTACGACAATGAGACGATGA AGCAGGCCGATATCAAGATCATCCTGCGCCCCGGGACGGACGGTGCCTTTGCCTGCGGCGTGATGCATGTCCTGTTTCGC GACGGCTATGCCGATCGTGCCTACATGGCGAAATACACCGACTGTCCAAGCGAACTCGAAGCCCATCTGAAGACGCGGCC GCCGGAATGGGCGTCGCAGATCTCTGGTGTTTCGGTTGTCGACATTGAGGCGTTCGCGAGACTGGTCGGCGAGACCAAGC GCACCTTCTTCCGGCTTGGCTATGGCTTCACCCGCAGCCGGAACGGCGCAACCCAGATGCACGCGGCGTCGTGTATTCCC GCGGTGACGGGCGCCTGGCAGTACGAAGGAGGCGGGGCCTTCTTCAACAATGCTGCGCTGTGGCACTTCGACGAGTCGAT CATCGAGGGCCACGACGCGATCGATCACGCCACCCGTTTTCTCGATCAGTCCCAGATCGGCCGCATCCTGACGGGAGATC CAGAATCGCTTTGCGGCGGACCGCCGGTCAAGGCGATGCTGATTCAGAACACTAATCCCATGACGGTGGCGCCCGAGCAG GATCTCGTCAGGAAGGGCTTTGCGCGTGATGATCTGTTCGTTGCGGTCCACGAGCAGTTCATGACGGAGACGGCGCAGAT GGCAGATATTGTGCTGCCGGCAACCATGTTCATGGAGCATGATGATCTCTACTACGGCGGCGGCCATCAGCACATTTCGG TCGGACCGAAGCTGATCGATCCCCCGGGTGAGTGCCGATCCAATCACGAGGTCCTGCGGGGCTTGGCGCGCCGGCTTGGC GCCCATCATCCCGGCTTTGAAATGACGCCGCGCGAACTGATCGATGCGACCTTGAAGAAGAGCGGCCATGGCGACATCGC CGCGCTCGAGGCAGATGTGTGGCGTGACCTGCAGCCTGATTTCCGCACCTCGCATTATCTCGACGGCTTCGCGCACAGGG ACGGCAAGTTTCACTTCAAGGCCGACTGGGCTCATCCGCCGTTCGGGCGCGTGATGGGCCATCCCGAGCGCATGCCGTCG CTGCCTGACCACTGGGCGGTGACCGAAGAGACGGACGAGCAGCATCCGTTCCGGCTGGCGACGAGCCCGGCGCGCTCGTT CCTCAACACCTCGTTCAACGAGACGCCCTCATCCCAGGCTCGCGAGGGCGCGCCGACGGTGATGATCCATCCGCTCGACG CCGAACCGCTTGGCATCGCCGACGGCGAGGCCGTCACGCTCGGTAATCTTCGCGGACAGACGTCGCTGAGGGCGCGGCTG TTCGAGGGGGTCCAGCGCGGCGTTCTGATCGCCGAATCGATCCACCCCAATGCCGCCCATATCGGCGGCCGCGGCATCAA TTCGCTGACCGCTGCGGACACTGTCGCTCCGATTGGGGGAGCGGCCTTCCACGACAACAAGGTGTGGCTGCGCAAAGCGC AGGCGTGA
Upstream 100 bases:
>100_bases TCGCGACGGGGGTTCCCCTTGCGGTGGAGGCCTGCAGCCTTTGTGCAAATGCGTCGCGAAGGCTCTCGGCTGAGGTCTTT TTTGATGTTAAAGATTGGGG
Downstream 100 bases:
>100_bases GGCGCTTCCGGAGATTCAAGCACAATCAAGTCGTTATGAGGCCGTCTGCGCTTGGCGCGGGCGGCTTTTAACGTTTTGGT GACCATCTCGCTTCGAGCTG
Product: putative dimethyl sulfoxide reductase(DMSO reductase)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 695; Mature: 695
Protein sequence:
>695_residues MNQQPRVDIRHSTCPHDCPSACALDVEVIDQSTIGRVRGSKRQTYTAGVVCAKVARYAERIHHAERLTFPLRRIGPKGSG QFARMSWDDALDEIAERFLLTEREFGSQAVWPYYYAGTMGLVMRDGLNRLTHVKRYSRFYSTICANVARVGFAIGTGKIA GVDPREMALSDLVVIWGTNPVNTQVNVMTHAARARKERGAKIAAVDIYDNETMKQADIKIILRPGTDGAFACGVMHVLFR DGYADRAYMAKYTDCPSELEAHLKTRPPEWASQISGVSVVDIEAFARLVGETKRTFFRLGYGFTRSRNGATQMHAASCIP AVTGAWQYEGGGAFFNNAALWHFDESIIEGHDAIDHATRFLDQSQIGRILTGDPESLCGGPPVKAMLIQNTNPMTVAPEQ DLVRKGFARDDLFVAVHEQFMTETAQMADIVLPATMFMEHDDLYYGGGHQHISVGPKLIDPPGECRSNHEVLRGLARRLG AHHPGFEMTPRELIDATLKKSGHGDIAALEADVWRDLQPDFRTSHYLDGFAHRDGKFHFKADWAHPPFGRVMGHPERMPS LPDHWAVTEETDEQHPFRLATSPARSFLNTSFNETPSSQAREGAPTVMIHPLDAEPLGIADGEAVTLGNLRGQTSLRARL FEGVQRGVLIAESIHPNAAHIGGRGINSLTAADTVAPIGGAAFHDNKVWLRKAQA
Sequences:
>Translated_695_residues MNQQPRVDIRHSTCPHDCPSACALDVEVIDQSTIGRVRGSKRQTYTAGVVCAKVARYAERIHHAERLTFPLRRIGPKGSG QFARMSWDDALDEIAERFLLTEREFGSQAVWPYYYAGTMGLVMRDGLNRLTHVKRYSRFYSTICANVARVGFAIGTGKIA GVDPREMALSDLVVIWGTNPVNTQVNVMTHAARARKERGAKIAAVDIYDNETMKQADIKIILRPGTDGAFACGVMHVLFR DGYADRAYMAKYTDCPSELEAHLKTRPPEWASQISGVSVVDIEAFARLVGETKRTFFRLGYGFTRSRNGATQMHAASCIP AVTGAWQYEGGGAFFNNAALWHFDESIIEGHDAIDHATRFLDQSQIGRILTGDPESLCGGPPVKAMLIQNTNPMTVAPEQ DLVRKGFARDDLFVAVHEQFMTETAQMADIVLPATMFMEHDDLYYGGGHQHISVGPKLIDPPGECRSNHEVLRGLARRLG AHHPGFEMTPRELIDATLKKSGHGDIAALEADVWRDLQPDFRTSHYLDGFAHRDGKFHFKADWAHPPFGRVMGHPERMPS LPDHWAVTEETDEQHPFRLATSPARSFLNTSFNETPSSQAREGAPTVMIHPLDAEPLGIADGEAVTLGNLRGQTSLRARL FEGVQRGVLIAESIHPNAAHIGGRGINSLTAADTVAPIGGAAFHDNKVWLRKAQA >Mature_695_residues MNQQPRVDIRHSTCPHDCPSACALDVEVIDQSTIGRVRGSKRQTYTAGVVCAKVARYAERIHHAERLTFPLRRIGPKGSG QFARMSWDDALDEIAERFLLTEREFGSQAVWPYYYAGTMGLVMRDGLNRLTHVKRYSRFYSTICANVARVGFAIGTGKIA GVDPREMALSDLVVIWGTNPVNTQVNVMTHAARARKERGAKIAAVDIYDNETMKQADIKIILRPGTDGAFACGVMHVLFR DGYADRAYMAKYTDCPSELEAHLKTRPPEWASQISGVSVVDIEAFARLVGETKRTFFRLGYGFTRSRNGATQMHAASCIP AVTGAWQYEGGGAFFNNAALWHFDESIIEGHDAIDHATRFLDQSQIGRILTGDPESLCGGPPVKAMLIQNTNPMTVAPEQ DLVRKGFARDDLFVAVHEQFMTETAQMADIVLPATMFMEHDDLYYGGGHQHISVGPKLIDPPGECRSNHEVLRGLARRLG AHHPGFEMTPRELIDATLKKSGHGDIAALEADVWRDLQPDFRTSHYLDGFAHRDGKFHFKADWAHPPFGRVMGHPERMPS LPDHWAVTEETDEQHPFRLATSPARSFLNTSFNETPSSQAREGAPTVMIHPLDAEPLGIADGEAVTLGNLRGQTSLRARL FEGVQRGVLIAESIHPNAAHIGGRGINSLTAADTVAPIGGAAFHDNKVWLRKAQA
Specific function: Terminal Reductase During Anaerobic Growth On Various Sulfoxide And N-Oxide Compounds (By Similarity). [C]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm Face Of The Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787870, Length=726, Percent_Identity=25.4820936639118, Blast_Score=165, Evalue=1e-41, Organism=Escherichia coli, GI171474008, Length=783, Percent_Identity=23.6270753512133, Blast_Score=157, Evalue=2e-39, Organism=Escherichia coli, GI87081797, Length=769, Percent_Identity=24.0572171651495, Blast_Score=154, Evalue=2e-38, Organism=Escherichia coli, GI3868721, Length=700, Percent_Identity=23.5714285714286, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI145693196, Length=766, Percent_Identity=25.9791122715405, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI87081994, Length=717, Percent_Identity=23.5704323570432, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1787231, Length=705, Percent_Identity=22.6950354609929, Blast_Score=101, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 76703; Mature: 76703
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS00290 IG_MHC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQQPRVDIRHSTCPHDCPSACALDVEVIDQSTIGRVRGSKRQTYTAGVVCAKVARYAER CCCCCCEEECCCCCCCCCCCHHEEEHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHH IHHAERLTFPLRRIGPKGSGQFARMSWDDALDEIAERFLLTEREFGSQAVWPYYYAGTMG HHHHHHHCCHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHH LVMRDGLNRLTHVKRYSRFYSTICANVARVGFAIGTGKIAGVDPREMALSDLVVIWGTNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHCEEEEECCCC VNTQVNVMTHAARARKERGAKIAAVDIYDNETMKQADIKIILRPGTDGAFACGVMHVLFR CCCEEHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH DGYADRAYMAKYTDCPSELEAHLKTRPPEWASQISGVSVVDIEAFARLVGETKRTFFRLG CCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHC YGFTRSRNGATQMHAASCIPAVTGAWQYEGGGAFFNNAALWHFDESIIEGHDAIDHATRF CCEECCCCCCCHHHHHHHHHHHCCCEEECCCCEEECCCEEEECCHHHHCCCHHHHHHHHH LDQSQIGRILTGDPESLCGGPPVKAMLIQNTNPMTVAPEQDLVRKGFARDDLFVAVHEQF HCHHHCCCEECCCCHHHCCCCCCEEEEEECCCCCEECCCHHHHHCCCCCCCHHHHHHHHH MTETAQMADIVLPATMFMEHDDLYYGGGHQHISVGPKLIDPPGECRSNHEVLRGLARRLG HHHHHHHHHHHHHHHHHEECCCEEECCCCCEEECCCEECCCCCCCCCCHHHHHHHHHHHC AHHPGFEMTPRELIDATLKKSGHGDIAALEADVWRDLQPDFRTSHYLDGFAHRDGKFHFK CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCCCHHHHHCCHHCCCCEEEEE ADWAHPPFGRVMGHPERMPSLPDHWAVTEETDEQHPFRLATSPARSFLNTSFNETPSSQA ECCCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCCCHH REGAPTVMIHPLDAEPLGIADGEAVTLGNLRGQTSLRARLFEGVQRGVLIAESIHPNAAH HCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCEEEEECCCCCCHH IGGRGINSLTAADTVAPIGGAAFHDNKVWLRKAQA CCCCCCCCHHHHHHHCCCCCCEEECCCEEEEECCC >Mature Secondary Structure MNQQPRVDIRHSTCPHDCPSACALDVEVIDQSTIGRVRGSKRQTYTAGVVCAKVARYAER CCCCCCEEECCCCCCCCCCCHHEEEHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHH IHHAERLTFPLRRIGPKGSGQFARMSWDDALDEIAERFLLTEREFGSQAVWPYYYAGTMG HHHHHHHCCHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHH LVMRDGLNRLTHVKRYSRFYSTICANVARVGFAIGTGKIAGVDPREMALSDLVVIWGTNP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHCEEEEECCCC VNTQVNVMTHAARARKERGAKIAAVDIYDNETMKQADIKIILRPGTDGAFACGVMHVLFR CCCEEHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH DGYADRAYMAKYTDCPSELEAHLKTRPPEWASQISGVSVVDIEAFARLVGETKRTFFRLG CCCCCCHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHC YGFTRSRNGATQMHAASCIPAVTGAWQYEGGGAFFNNAALWHFDESIIEGHDAIDHATRF CCEECCCCCCCHHHHHHHHHHHCCCEEECCCCEEECCCEEEECCHHHHCCCHHHHHHHHH LDQSQIGRILTGDPESLCGGPPVKAMLIQNTNPMTVAPEQDLVRKGFARDDLFVAVHEQF HCHHHCCCEECCCCHHHCCCCCCEEEEEECCCCCEECCCHHHHHCCCCCCCHHHHHHHHH MTETAQMADIVLPATMFMEHDDLYYGGGHQHISVGPKLIDPPGECRSNHEVLRGLARRLG HHHHHHHHHHHHHHHHHEECCCEEECCCCCEEECCCEECCCCCCCCCCHHHHHHHHHHHC AHHPGFEMTPRELIDATLKKSGHGDIAALEADVWRDLQPDFRTSHYLDGFAHRDGKFHFK CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCCCCHHHHHCCHHCCCCEEEEE ADWAHPPFGRVMGHPERMPSLPDHWAVTEETDEQHPFRLATSPARSFLNTSFNETPSSQA ECCCCCCHHHHCCCHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCCCCHH REGAPTVMIHPLDAEPLGIADGEAVTLGNLRGQTSLRARLFEGVQRGVLIAESIHPNAAH HCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCEEEEECCCCCCHH IGGRGINSLTAADTVAPIGGAAFHDNKVWLRKAQA CCCCCCCCHHHHHHHCCCCCCEEECCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]