Click here to switch to the map view.

The map label for this gene is yjiA [H]

Identifier: 146342073

GI number: 146342073

Start: 5428017

End: 5429090

Strand: Direct

Name: yjiA [H]

Synonym: BRADO5213

Alternate gene names: 146342073

Gene position: 5428017-5429090 (Clockwise)

Preceding gene: 146342069

Following gene: 146342077

Centisome position: 72.79

GC content: 63.5

Gene sequence:

>1074_bases
ATGAGTCTGTTCGAGAGCGACAAGTCAGCCCAGCGTTTGCCCGTGTCGTTGATCACCGGCTTTCTCGGCAGCGGCAAAAC
GACGCTGCTCAATCGCTTGCTGCGCCGCGACGAGATGAGCGACAGCGCCGTCATCATCAACGAGTATGGCGAGATCTCGC
TCGACCATCTCCTGGTCGAACGCGTCGACGGCGAGGTCGCGGTTCTCGCGAGTGGGTGTGTGTGCTGCACAATCCGCAGC
GACCTCGAAGAGACGCTGCGCGCGCTGCTGGTGCGGCGCGACCGCGCCGAGGTGCCGCCGTTCCGGCGCATCCTCATCGA
GACGACCGGCCTTGCGGATCCCGCGCCGATCCTCCAGCTGCTGCTGAACAATCCGCTGGTCTCGCATTTCCTGCGGCTCG
ACACCGTCGTGACGACGGTCGACGCCGTCAACGCGGCGCATCAGCTCGATCGCCAATATGAAGCGGTGAAGCAGGTTGCG
CTGGCCGACCGGCTGTTGGTCACCAAATCTGACCTGGTCAGCGATGTTGCCGCATTGGAGCAGCGGCTGCGGCGGCTCAA
TCCAGGCGCCAGGATCGAACGCGTGAGTCATGGCGAGATCGATCCCGCTGATCTGTTCGGTGGCGCGCTGATCGATCCGG
ACAAGAAGGCGATCGACGTTGCGCGCTGGCTCAACCAACAGGTTTTCGCTGACGATGTCGGGGCCGCGCATGAGCATCAC
ACCCACGATCATGCCGGTCACGGCCATCACGATCACGGCCACGCTCATGAGTCGTCAGTCACGAGCTTCATGATCGCGTT
CGACGAGCCGCTGGACTGGACGAACGTGTCCGGCTGGCTCGCTTATCTTCGCCAGGTGCGTGGCGAGGATCTGCTGCGGG
TGAAGGGCGTCCTCAATCTTATCGGAGAAGCGACACCAGTCGTCATCCACGGCGTCCACCATGTTTTCCATCCGCCAGTT
GCGCTTCCCGCATGGCCCGATGCCGACCGTCGCTCGCGCATCGTCTTCATCACGCGGGGGATTACGCGAGACGATGTGCT
CGCGTTGTGGGAAGCTGGACGCGCGGCGGCGTAG

Upstream 100 bases:

>100_bases
TGCGCCCATTTGCTGGGCTTTAAAAAATGATTTTCGCCATGCTCCTCCTCCATTAGTCTAATGTCCAGAGACAAAAATAA
GACAGCGGGTGGAGACGCCG

Downstream 100 bases:

>100_bases
GCGTGTAGGGCGGATTAGCCGACGGCGTCATCCGCCGCATGCTACGACGAAGAACGTGAACGACGCGTGGCTCGTCCACT
CTCCCGGCCCTTCAGCGGAC

Product: putative cobalamin synthesis protein/P47K family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSLFESDKSAQRLPVSLITGFLGSGKTTLLNRLLRRDEMSDSAVIINEYGEISLDHLLVERVDGEVAVLASGCVCCTIRS
DLEETLRALLVRRDRAEVPPFRRILIETTGLADPAPILQLLLNNPLVSHFLRLDTVVTTVDAVNAAHQLDRQYEAVKQVA
LADRLLVTKSDLVSDVAALEQRLRRLNPGARIERVSHGEIDPADLFGGALIDPDKKAIDVARWLNQQVFADDVGAAHEHH
THDHAGHGHHDHGHAHESSVTSFMIAFDEPLDWTNVSGWLAYLRQVRGEDLLRVKGVLNLIGEATPVVIHGVHHVFHPPV
ALPAWPDADRRSRIVFITRGITRDDVLALWEAGRAAA

Sequences:

>Translated_357_residues
MSLFESDKSAQRLPVSLITGFLGSGKTTLLNRLLRRDEMSDSAVIINEYGEISLDHLLVERVDGEVAVLASGCVCCTIRS
DLEETLRALLVRRDRAEVPPFRRILIETTGLADPAPILQLLLNNPLVSHFLRLDTVVTTVDAVNAAHQLDRQYEAVKQVA
LADRLLVTKSDLVSDVAALEQRLRRLNPGARIERVSHGEIDPADLFGGALIDPDKKAIDVARWLNQQVFADDVGAAHEHH
THDHAGHGHHDHGHAHESSVTSFMIAFDEPLDWTNVSGWLAYLRQVRGEDLLRVKGVLNLIGEATPVVIHGVHHVFHPPV
ALPAWPDADRRSRIVFITRGITRDDVLALWEAGRAAA
>Mature_356_residues
SLFESDKSAQRLPVSLITGFLGSGKTTLLNRLLRRDEMSDSAVIINEYGEISLDHLLVERVDGEVAVLASGCVCCTIRSD
LEETLRALLVRRDRAEVPPFRRILIETTGLADPAPILQLLLNNPLVSHFLRLDTVVTTVDAVNAAHQLDRQYEAVKQVAL
ADRLLVTKSDLVSDVAALEQRLRRLNPGARIERVSHGEIDPADLFGGALIDPDKKAIDVARWLNQQVFADDVGAAHEHHT
HDHAGHGHHDHGHAHESSVTSFMIAFDEPLDWTNVSGWLAYLRQVRGEDLLRVKGVLNLIGEATPVVIHGVHHVFHPPVA
LPAWPDADRRSRIVFITRGITRDDVLALWEAGRAAA

Specific function: Binds GTP. May function as GTP-dependent regulator [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI126722884, Length=361, Percent_Identity=28.2548476454294, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI33469141, Length=361, Percent_Identity=28.2548476454294, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI148727351, Length=361, Percent_Identity=28.5318559556787, Blast_Score=129, Evalue=4e-30,
Organism=Homo sapiens, GI146231952, Length=361, Percent_Identity=28.808864265928, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI223941779, Length=361, Percent_Identity=27.1468144044321, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI223941776, Length=356, Percent_Identity=27.247191011236, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI119120938, Length=200, Percent_Identity=30.5, Blast_Score=86, Evalue=6e-17,
Organism=Escherichia coli, GI87082430, Length=344, Percent_Identity=31.6860465116279, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1788499, Length=193, Percent_Identity=33.160621761658, Blast_Score=77, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6324356, Length=379, Percent_Identity=25.8575197889182, Blast_Score=92, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 39444; Mature: 39313

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFESDKSAQRLPVSLITGFLGSGKTTLLNRLLRRDEMSDSAVIINEYGEISLDHLLVE
CCCCCCCCHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH
RVDGEVAVLASGCVCCTIRSDLEETLRALLVRRDRAEVPPFRRILIETTGLADPAPILQL
HCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHH
LLNNPLVSHFLRLDTVVTTVDAVNAAHQLDRQYEAVKQVALADRLLVTKSDLVSDVAALE
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLRRLNPGARIERVSHGEIDPADLFGGALIDPDKKAIDVARWLNQQVFADDVGAAHEHH
HHHHHCCCCCCEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCC
THDHAGHGHHDHGHAHESSVTSFMIAFDEPLDWTNVSGWLAYLRQVRGEDLLRVKGVLNL
CCCCCCCCCCCCCCCHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
IGEATPVVIHGVHHVFHPPVALPAWPDADRRSRIVFITRGITRDDVLALWEAGRAAA
HCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SLFESDKSAQRLPVSLITGFLGSGKTTLLNRLLRRDEMSDSAVIINEYGEISLDHLLVE
CCCCCCCHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH
RVDGEVAVLASGCVCCTIRSDLEETLRALLVRRDRAEVPPFRRILIETTGLADPAPILQL
HCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHH
LLNNPLVSHFLRLDTVVTTVDAVNAAHQLDRQYEAVKQVALADRLLVTKSDLVSDVAALE
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLRRLNPGARIERVSHGEIDPADLFGGALIDPDKKAIDVARWLNQQVFADDVGAAHEHH
HHHHHCCCCCCEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCC
THDHAGHGHHDHGHAHESSVTSFMIAFDEPLDWTNVSGWLAYLRQVRGEDLLRVKGVLNL
CCCCCCCCCCCCCCCHHHHHHEEEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
IGEATPVVIHGVHHVFHPPVALPAWPDADRRSRIVFITRGITRDDVLALWEAGRAAA
HCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 1650347 [H]