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The map label for this gene is degT [H]

Identifier: 146342047

GI number: 146342047

Start: 5397209

End: 5398372

Strand: Direct

Name: degT [H]

Synonym: BRADO5187

Alternate gene names: 146342047

Gene position: 5397209-5398372 (Clockwise)

Preceding gene: 146342046

Following gene: 146342048

Centisome position: 72.38

GC content: 60.14

Gene sequence:

>1164_bases
ATGGTGCGTCGGGGTACCGGCATGGGTGGAACCGGAATGACCGAGAATAGGCTGGCGACGGTATTGGACCGCAAGGTTCC
TTTCAACGACCTGTCGATCCAATGGCAACAGATTGCCGTCGACGTCCGCCAAGATTTCGAGATGATCTTTGAGCAAAGCG
CGTTCTGCCTCGGGCCGTTTGTCGAACGCTTTGAAGCGGACATCGCGCAGTATCTTGGCGTCAGGCACGCTATTGGCGTG
AATTCCGGGACTTCTGCTCTTCACTTGGCGGCTCTTGCCAAAGGCATCGGCCCCGGTGACGAAGTGATCGTGCCGGCACA
CTCCTTCATTGCGACGCTCTGGGGCGTACTCTACGCCGGAGCAACGCCTGTGTTCTGCGATGTGGAGCCGACGACCGGCA
ACTTGGACGTGGCAGCGGCCGAGCGATGTGTCACAGCGGCCACGAAGGCAATCATTCCCGTCCACCTGTACGGGCAGTCG
GCGAACATGAAAGCCGTCATGGAGCTCGCACAACGCTTTGGCTTGGCGGTCATCGAGGATGCCGCGCAGGCGATCGGCGC
GACCTGGCAGCAGCGGTATCTTGGCAGCATCGGCGATCTAGGCTGCTTCAGCTTTTATCCTGGAAAGAACCTCGGTGCAG
CGGGCGAGGCTGGGCTGATCGTCACGAATGACGACGACGTTGCCAAGCAAGTGCGTTCGCTGCGCAATCACGGCCAATCG
GAACGTTACGTACATCAGATCGTCGGCTACAACTGCCGCATGGATGGCTTGCAGGGCGCCGTGCTTAGACGAAAGCTCCC
GCGGCTCGCGGCCTGGACGGCGTCACGGCGAAAATTGGCCGAGAGGTACAGGCAAAAACTCTTGGAAACTCCCCTGGTGT
TGCCTTCGGTGCAGTACGGGGAACATGTGTGGCATTTGTTCGTCGTGCGCACCCCGGAGCGCGACCGCTTGAGAGCGGCG
CTGGCGGAGCGCCGCATCGAAACCGGACTTCATTATCCGATCGCTCTCCACAAGCAGCCCTGCCTCAACCATTTACCCTC
GGCCAAATTGAGCTTCCCGTCTGCCGAAGCTTGGGCCGCGGAGTGTCTATCGCTTCCGCTGTTCACGGGCATGACAGAAG
ATCAAGTCGATTATGTCGCCGACGCGATCCGCGCCCTCTGCTAA

Upstream 100 bases:

>100_bases
GATTGGGGATGTCCGAAGTCGTCGACCGGGAAATGCGGCGGAATCATAGTGGACCTGCAGCTGCTCTGGAGCTGTACTGA
ATCGAACGGCGCCAGGGCAG

Downstream 100 bases:

>100_bases
TCAAGATACTCGACCGCGATGCAGTCCCTCCTGGACTCTCGCGGAAAGGCCGGTACGAACAACATGCCCATGGAAGCCCT
CGGCAGACGCGTCCCAGATC

Product: DegT/DnrJ/EryC1/StrS aminotransferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MVRRGTGMGGTGMTENRLATVLDRKVPFNDLSIQWQQIAVDVRQDFEMIFEQSAFCLGPFVERFEADIAQYLGVRHAIGV
NSGTSALHLAALAKGIGPGDEVIVPAHSFIATLWGVLYAGATPVFCDVEPTTGNLDVAAAERCVTAATKAIIPVHLYGQS
ANMKAVMELAQRFGLAVIEDAAQAIGATWQQRYLGSIGDLGCFSFYPGKNLGAAGEAGLIVTNDDDVAKQVRSLRNHGQS
ERYVHQIVGYNCRMDGLQGAVLRRKLPRLAAWTASRRKLAERYRQKLLETPLVLPSVQYGEHVWHLFVVRTPERDRLRAA
LAERRIETGLHYPIALHKQPCLNHLPSAKLSFPSAEAWAAECLSLPLFTGMTEDQVDYVADAIRALC

Sequences:

>Translated_387_residues
MVRRGTGMGGTGMTENRLATVLDRKVPFNDLSIQWQQIAVDVRQDFEMIFEQSAFCLGPFVERFEADIAQYLGVRHAIGV
NSGTSALHLAALAKGIGPGDEVIVPAHSFIATLWGVLYAGATPVFCDVEPTTGNLDVAAAERCVTAATKAIIPVHLYGQS
ANMKAVMELAQRFGLAVIEDAAQAIGATWQQRYLGSIGDLGCFSFYPGKNLGAAGEAGLIVTNDDDVAKQVRSLRNHGQS
ERYVHQIVGYNCRMDGLQGAVLRRKLPRLAAWTASRRKLAERYRQKLLETPLVLPSVQYGEHVWHLFVVRTPERDRLRAA
LAERRIETGLHYPIALHKQPCLNHLPSAKLSFPSAEAWAAECLSLPLFTGMTEDQVDYVADAIRALC
>Mature_387_residues
MVRRGTGMGGTGMTENRLATVLDRKVPFNDLSIQWQQIAVDVRQDFEMIFEQSAFCLGPFVERFEADIAQYLGVRHAIGV
NSGTSALHLAALAKGIGPGDEVIVPAHSFIATLWGVLYAGATPVFCDVEPTTGNLDVAAAERCVTAATKAIIPVHLYGQS
ANMKAVMELAQRFGLAVIEDAAQAIGATWQQRYLGSIGDLGCFSFYPGKNLGAAGEAGLIVTNDDDVAKQVRSLRNHGQS
ERYVHQIVGYNCRMDGLQGAVLRRKLPRLAAWTASRRKLAERYRQKLLETPLVLPSVQYGEHVWHLFVVRTPERDRLRAA
LAERRIETGLHYPIALHKQPCLNHLPSAKLSFPSAEAWAAECLSLPLFTGMTEDQVDYVADAIRALC

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=360, Percent_Identity=36.3888888888889, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI2367285, Length=332, Percent_Identity=31.9277108433735, Blast_Score=161, Evalue=7e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42426; Mature: 42426

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRRGTGMGGTGMTENRLATVLDRKVPFNDLSIQWQQIAVDVRQDFEMIFEQSAFCLGPF
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VERFEADIAQYLGVRHAIGVNSGTSALHLAALAKGIGPGDEVIVPAHSFIATLWGVLYAG
HHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHCC
ATPVFCDVEPTTGNLDVAAAERCVTAATKAIIPVHLYGQSANMKAVMELAQRFGLAVIED
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCHHHHHH
AAQAIGATWQQRYLGSIGDLGCFSFYPGKNLGAAGEAGLIVTNDDDVAKQVRSLRNHGQS
HHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCH
ERYVHQIVGYNCRMDGLQGAVLRRKLPRLAAWTASRRKLAERYRQKLLETPLVLPSVQYG
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHC
EHVWHLFVVRTPERDRLRAALAERRIETGLHYPIALHKQPCLNHLPSAKLSFPSAEAWAA
CEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHH
ECLSLPLFTGMTEDQVDYVADAIRALC
HHHHHHHHCCCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MVRRGTGMGGTGMTENRLATVLDRKVPFNDLSIQWQQIAVDVRQDFEMIFEQSAFCLGPF
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VERFEADIAQYLGVRHAIGVNSGTSALHLAALAKGIGPGDEVIVPAHSFIATLWGVLYAG
HHHHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHCC
ATPVFCDVEPTTGNLDVAAAERCVTAATKAIIPVHLYGQSANMKAVMELAQRFGLAVIED
CCCEEEECCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCHHHHHH
AAQAIGATWQQRYLGSIGDLGCFSFYPGKNLGAAGEAGLIVTNDDDVAKQVRSLRNHGQS
HHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCH
ERYVHQIVGYNCRMDGLQGAVLRRKLPRLAAWTASRRKLAERYRQKLLETPLVLPSVQYG
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHC
EHVWHLFVVRTPERDRLRAALAERRIETGLHYPIALHKQPCLNHLPSAKLSFPSAEAWAA
CEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHH
ECLSLPLFTGMTEDQVDYVADAIRALC
HHHHHHHHCCCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]