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The map label for this gene is ytfH [H]

Identifier: 146341913

GI number: 146341913

Start: 5237385

End: 5237759

Strand: Direct

Name: ytfH [H]

Synonym: BRADO5048

Alternate gene names: 146341913

Gene position: 5237385-5237759 (Clockwise)

Preceding gene: 146341912

Following gene: 146341915

Centisome position: 70.24

GC content: 65.07

Gene sequence:

>375_bases
ATGCGAGCTGCCAACGTCTATTCGGCCGACTGCCCGACCCGCCAGATCCTCGATCGGGTCGGCGACAAATGGGCGGTGCT
GATCCTGATCCTGTTGCGCAATGAGCCGTTGCGCTTCAATCAGTTGCGCCGCGCGATTGAAGGCATCTCGCAGAAGATGC
TCTCGCAGGTGTTGAAGAGTCTCGAGCGCGACGGCCTGGTGCGGCGGCGCGCGATCGCGACCGTTCCAGTAACGGTTGAA
TATTCTATCACGCCGCTCGGGCTGACGCTCGCCGCCGCGGTCGATCCGCTGCGCGACTGGGCGGAGCGGCATCTGAAGGA
CGTCACCGCCGCGCAGCGGCGCTACGACGCGCAGCAGCCATCGAAGGCCGCGTAA

Upstream 100 bases:

>100_bases
TGGACGAGATCCCTTTGGTATCCGATAGTAACTAGATAGCGGAACGAATGCTGGTGTTAAGAGCGCACTTTGAGATCACC
AGGTCACGCCGGAGTAACCG

Downstream 100 bases:

>100_bases
GCGGGCTTTTTCCTCGGTTGAACTAGCCCTGTCCGGCCTTTAGCCCTGCCCAGACTTGGCGAGCTCCACCTCGACGCGGA
GCTCGATCTCCGAGAGGATC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MRAANVYSADCPTRQILDRVGDKWAVLILILLRNEPLRFNQLRRAIEGISQKMLSQVLKSLERDGLVRRRAIATVPVTVE
YSITPLGLTLAAAVDPLRDWAERHLKDVTAAQRRYDAQQPSKAA

Sequences:

>Translated_124_residues
MRAANVYSADCPTRQILDRVGDKWAVLILILLRNEPLRFNQLRRAIEGISQKMLSQVLKSLERDGLVRRRAIATVPVTVE
YSITPLGLTLAAAVDPLRDWAERHLKDVTAAQRRYDAQQPSKAA
>Mature_124_residues
MRAANVYSADCPTRQILDRVGDKWAVLILILLRNEPLRFNQLRRAIEGISQKMLSQVLKSLERDGLVRRRAIATVPVTVE
YSITPLGLTLAAAVDPLRDWAERHLKDVTAAQRRYDAQQPSKAA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=110, Percent_Identity=45.4545454545455, Blast_Score=107, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13990; Mature: 13990

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAANVYSADCPTRQILDRVGDKWAVLILILLRNEPLRFNQLRRAIEGISQKMLSQVLKS
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LERDGLVRRRAIATVPVTVEYSITPLGLTLAAAVDPLRDWAERHLKDVTAAQRRYDAQQP
HHHCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SKAA
CCCC
>Mature Secondary Structure
MRAANVYSADCPTRQILDRVGDKWAVLILILLRNEPLRFNQLRRAIEGISQKMLSQVLKS
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LERDGLVRRRAIATVPVTVEYSITPLGLTLAAAVDPLRDWAERHLKDVTAAQRRYDAQQP
HHHCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SKAA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]