Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 146341865

GI number: 146341865

Start: 5191296

End: 5192378

Strand: Direct

Name: rpfG [H]

Synonym: BRADO4997

Alternate gene names: 146341865

Gene position: 5191296-5192378 (Clockwise)

Preceding gene: 146341864

Following gene: 146341866

Centisome position: 69.62

GC content: 62.7

Gene sequence:

>1083_bases
ATGCGCAAGTGCGGAATGATCCCGGACCAGTTCTTCATGAACGTTCATCTCGTTGGCGATGACAAGGCCAAGCTCGCTCT
GCTTCGCGGCATGCTGGCGGAGCGATGCTCGCTCACATCCGAACTCATCGGTGACGCCGATATCAAGAGTCGCGACATCG
ACGCCATCGTCGTGGCGGCGGATCTGCGCGATGTCGACAACATCGCTGCGTTGAAAGAGATATCCGACCGGCTCGCCCGC
ATTCCGCGCCGCATCTTCCTGACCAACCACAAGTCTCGCCTGTCGACGGTCCAGGCCTATGCGCTCGGTGCGACGAGCGT
GCTGTCGAGCACGCCCAGTCGCAATCAGTTGCTGGGAAAGCTGCTCGACGCGCGACCGGATTCGGCCGCCAACAGCGTCG
CCGTCGACGGTCGCCAGGCTGCGTTCGCAGGTGCGTCCAGCATCGCCTCGATGTTCGCCGCGGTCCTGGGCGGCACGGAA
ATCAACATCGAGGAAACGCGCCGCGCGGGCAAGCACATCGCCGAATGCATCGCTGAAAACGGCCTTTCCGACTGGCTCGC
GACCGTTCGCCGCCACCATGAGGGCACCTATCAGCACTGTCTGCTGGTGACGGGAATCACCGTGGACTTCGGCCTGAGCC
TCGGCGTTCACAGCTCCGATCTCGAGCGGCTCTACATGGCCGCGATGTTCCACGACATCGGCAAGGCCACGATCCCGCTC
ACCATCCTCGACAAGCCGGGCCGTCTCGACGTCAAGGAGCGCGCGCTGGTCGAGACTCATCCGTCGGCAGGCTACGACGC
TCTGAAGGACAACGAGGCGATCAGCGTCGAGGTGCTCGACGCGGTGCGCCACCATCACGAGTTTCTCGACGGCAGCGGCT
ATCCGGATGGACTGATGGATCACAACATCCCGGATCTGACACGCATCCTCACCATCTCCGACATCTTCTCGGCCCTGATC
GAATACCGCAGCTACAAGCCGGTAATGGCGCGCGAGAAGGCTTATGAGATCCTTCAGGGCATGGAAGGCAAGCTGGAGAA
GCCGCTGGTCGGCGCGTTCCGCGACGTCGCGCTGATCCGTTGA

Upstream 100 bases:

>100_bases
GCTACCATTTCGAGCGATAGTGTTAGTTCTTAGCTAACGCAAACCAACGACCGGCCAGCGAACGAATGGGCCAAATTTAA
CGATTCCTCCGCATCATTTC

Downstream 100 bases:

>100_bases
GCGGAACTCCGATCATGGTCAATACGTGGTAAAACGCGCAGCGCAAATCTGAACTGATCGGCAAGGCCTATCTTGGCAGC
TTTGCAATAGCATCGACCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MRKCGMIPDQFFMNVHLVGDDKAKLALLRGMLAERCSLTSELIGDADIKSRDIDAIVVAADLRDVDNIAALKEISDRLAR
IPRRIFLTNHKSRLSTVQAYALGATSVLSSTPSRNQLLGKLLDARPDSAANSVAVDGRQAAFAGASSIASMFAAVLGGTE
INIEETRRAGKHIAECIAENGLSDWLATVRRHHEGTYQHCLLVTGITVDFGLSLGVHSSDLERLYMAAMFHDIGKATIPL
TILDKPGRLDVKERALVETHPSAGYDALKDNEAISVEVLDAVRHHHEFLDGSGYPDGLMDHNIPDLTRILTISDIFSALI
EYRSYKPVMAREKAYEILQGMEGKLEKPLVGAFRDVALIR

Sequences:

>Translated_360_residues
MRKCGMIPDQFFMNVHLVGDDKAKLALLRGMLAERCSLTSELIGDADIKSRDIDAIVVAADLRDVDNIAALKEISDRLAR
IPRRIFLTNHKSRLSTVQAYALGATSVLSSTPSRNQLLGKLLDARPDSAANSVAVDGRQAAFAGASSIASMFAAVLGGTE
INIEETRRAGKHIAECIAENGLSDWLATVRRHHEGTYQHCLLVTGITVDFGLSLGVHSSDLERLYMAAMFHDIGKATIPL
TILDKPGRLDVKERALVETHPSAGYDALKDNEAISVEVLDAVRHHHEFLDGSGYPDGLMDHNIPDLTRILTISDIFSALI
EYRSYKPVMAREKAYEILQGMEGKLEKPLVGAFRDVALIR
>Mature_360_residues
MRKCGMIPDQFFMNVHLVGDDKAKLALLRGMLAERCSLTSELIGDADIKSRDIDAIVVAADLRDVDNIAALKEISDRLAR
IPRRIFLTNHKSRLSTVQAYALGATSVLSSTPSRNQLLGKLLDARPDSAANSVAVDGRQAAFAGASSIASMFAAVLGGTE
INIEETRRAGKHIAECIAENGLSDWLATVRRHHEGTYQHCLLVTGITVDFGLSLGVHSSDLERLYMAAMFHDIGKATIPL
TILDKPGRLDVKERALVETHPSAGYDALKDNEAISVEVLDAVRHHHEFLDGSGYPDGLMDHNIPDLTRILTISDIFSALI
EYRSYKPVMAREKAYEILQGMEGKLEKPLVGAFRDVALIR

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 39396; Mature: 39396

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKCGMIPDQFFMNVHLVGDDKAKLALLRGMLAERCSLTSELIGDADIKSRDIDAIVVAA
CCCCCCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
DLRDVDNIAALKEISDRLARIPRRIFLTNHKSRLSTVQAYALGATSVLSSTPSRNQLLGK
CHHCHHHHHHHHHHHHHHHHCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LLDARPDSAANSVAVDGRQAAFAGASSIASMFAAVLGGTEINIEETRRAGKHIAECIAEN
HHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
GLSDWLATVRRHHEGTYQHCLLVTGITVDFGLSLGVHSSDLERLYMAAMFHDIGKATIPL
CHHHHHHHHHHHCCCCHHHEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
TILDKPGRLDVKERALVETHPSAGYDALKDNEAISVEVLDAVRHHHEFLDGSGYPDGLMD
EEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCC
HNIPDLTRILTISDIFSALIEYRSYKPVMAREKAYEILQGMEGKLEKPLVGAFRDVALIR
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRKCGMIPDQFFMNVHLVGDDKAKLALLRGMLAERCSLTSELIGDADIKSRDIDAIVVAA
CCCCCCCCHHHEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEE
DLRDVDNIAALKEISDRLARIPRRIFLTNHKSRLSTVQAYALGATSVLSSTPSRNQLLGK
CHHCHHHHHHHHHHHHHHHHCCHHHEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LLDARPDSAANSVAVDGRQAAFAGASSIASMFAAVLGGTEINIEETRRAGKHIAECIAEN
HHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
GLSDWLATVRRHHEGTYQHCLLVTGITVDFGLSLGVHSSDLERLYMAAMFHDIGKATIPL
CHHHHHHHHHHHCCCCHHHEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
TILDKPGRLDVKERALVETHPSAGYDALKDNEAISVEVLDAVRHHHEFLDGSGYPDGLMD
EEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCCC
HNIPDLTRILTISDIFSALIEYRSYKPVMAREKAYEILQGMEGKLEKPLVGAFRDVALIR
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]