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The map label for this gene is yqgF [C]

Identifier: 146341407

GI number: 146341407

Start: 4696343

End: 4696828

Strand: Direct

Name: yqgF [C]

Synonym: BRADO4497

Alternate gene names: 146341407

Gene position: 4696343-4696828 (Clockwise)

Preceding gene: 146341405

Following gene: 146341408

Centisome position: 62.98

GC content: 70.16

Gene sequence:

>486_bases
ATGCCCGCTCCTATCCTGCCACTCATCGAAGCCGCCGGCCGCTGGCCCGAGCGCGGCGCACTGGTCGGCCTCGATCTCGG
CACCAAGACCATCGGCGTCGCGGTGTCCGATCCTGACCGACGCCTCGCCACCGGCGTCGAGACGATCCAGCGCAAGGCCT
TCAAGGCCGATGCCGCGCGACTGCTCGCCATCTGCGCAGAGCGCAAGGTCGTGGGCTTCGTGCTCGGCCTGCCGATCAAC
ATGGATGGCAGCGAGGGGCCGCGGGCGCAATCGACCCGGGCGTTCGCGCGCAACCTCGCCGGCCTCACCGACCTGCCGAT
CGGACTGTGGGACGAGCGGCTGTCGACCGCGGCGGTCGAGCGCGAACTGATCGGCATGGATGTCAGCCGCGCCAAGCGCG
CCGAGGTGATCGACACGCATGCGGCGATCTTCATCCTGCAGGGCGCGCTCGACCGGCTGACGACCTTGCGCCGCTCCGGC
CAGTAA

Upstream 100 bases:

>100_bases
TTCACGGTGTGATGATGCTTATAGAACGATTGCGGCGCAGCGGCAATCCGTACTCCCGGCCCGCTGGTCCGTCACACCAG
CGCGTGCTAAGCGGCCCGCC

Downstream 100 bases:

>100_bases
GGCGATGAGCGCAGTCGTCGCCGCACTGGCGCCGGTGTTCCTGCTGATCGTCCTCGGCTTCGGCCTGCGCCGCAGCCTGA
TCCGGCTTGAGGCGCAATGG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MPAPILPLIEAAGRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAICAERKVVGFVLGLPIN
MDGSEGPRAQSTRAFARNLAGLTDLPIGLWDERLSTAAVERELIGMDVSRAKRAEVIDTHAAIFILQGALDRLTTLRRSG
Q

Sequences:

>Translated_161_residues
MPAPILPLIEAAGRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAICAERKVVGFVLGLPIN
MDGSEGPRAQSTRAFARNLAGLTDLPIGLWDERLSTAAVERELIGMDVSRAKRAEVIDTHAAIFILQGALDRLTTLRRSG
Q
>Mature_160_residues
PAPILPLIEAAGRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAICAERKVVGFVLGLPINM
DGSEGPRAQSTRAFARNLAGLTDLPIGLWDERLSTAAVERELIGMDVSRAKRAEVIDTHAAIFILQGALDRLTTLRRSGQ

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=31.3432835820896, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 17263; Mature: 17132

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPILPLIEAAGRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAAR
CCCCHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
LLAICAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAGLTDLPIGLWDERLSTAAVE
HHHHHHHCHHEEHEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RELIGMDVSRAKRAEVIDTHAAIFILQGALDRLTTLRRSGQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PAPILPLIEAAGRWPERGALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAAR
CCCHHHHHHHCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
LLAICAERKVVGFVLGLPINMDGSEGPRAQSTRAFARNLAGLTDLPIGLWDERLSTAAVE
HHHHHHHCHHEEHEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
RELIGMDVSRAKRAEVIDTHAAIFILQGALDRLTTLRRSGQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA