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The map label for this gene is sdsB [H]

Identifier: 146341371

GI number: 146341371

Start: 4658972

End: 4660030

Strand: Direct

Name: sdsB [H]

Synonym: BRADO4457

Alternate gene names: 146341371

Gene position: 4658972-4660030 (Clockwise)

Preceding gene: 146341367

Following gene: 146341383

Centisome position: 62.48

GC content: 68.08

Gene sequence:

>1059_bases
ATGCATCCGCCGACCTTGCGTCAGTTGCAGCAGCTGGTCTACCTCGCGGAAGAACGGCATTTCGCACGGGCCGCCAAGCG
CGCCCATGTCACCCAGTCGGCCCTGAGCCGCAGCCTGCAGACGCTCGAGCAATCGGCGGGCATGCGGTTGTTCGACCGCA
GCTCGCGCGCGGTCGAGATCACCGCGGTCGGCGAGCGACTGGTGGCGCGGGCCCGCTCACTGCTGTCGGGCGCCGACGAT
ATCGGCCGCGAGATGCGGCTGTTGCGCTCGGGAGATGCCGGCGAGGTGACGGTGGGCGTGGGCGCGTTCACCGGCCTGAC
CTTGCTGCCGGATGCCATGGCGCGGCTGTATTCGGACCATCCGTCGGTGCGCATAACCGTCGTGCAGGATAATTGGCGCG
CCCTGATGGAGGTGCTGCAGCAGGGAAAGCTCGATTTTTTCCTGGCGCACATCACCGACATCCGCGCTGACGACAGCCTT
GACATCGAGCCGCTCGGCAGCCTCCCCGGACACTTCTACTGCCGGCCGTCACATCCCTTGGCGAGCCGGCGCGAGCTCTT
GGCCCGCGATCTGGCCGGGCAGCACTTCGCCTCCGTCGCGCTGCCGCCGGAATTCAGCAGGCGATTGGATGAGCTGATCG
CTGCACCGGGAGGGCGCGGCTTCGACGTCGCGCTCGAATCCGAGAATGCGGGCCTGCTCGTGCAGATGGCTCTTCGCTCG
GATGTCGTGCTGGTCGCGGGCGATGCGGTTCTCACCCACGAGCTTGCCTCCGGCCAGCTGGTCCGGCTCAACGTGGTCGA
GCTGCGCGAGCCTCGCGCGACCAACCTGCTGCTGGCGCAGTTCGGCATTTTGCGACTGAAGGGCCGAACCCTGTCGCCGG
CCGCGATGATGCTCATCGAAATGGTTCGCGCGCAAGCCGCGCGAACCTTGACCGGGCCGCGCCGTCCACCGGCGTCCCGC
GCGATCGGCGGCGCGCATCGTTCGCGGCCCAGCCCACGCAAGAAGCCGAGCGCACCTCCGCGCAACCAGTCGCGACATCA
CACTCGGGGCAAGACCTAA

Upstream 100 bases:

>100_bases
CGCCCCGGTATTTCCCCTGATATGTTTGCGCCATTCTGAGATTGACCGTCTTAGAAATCCAATGAATTGTTATGGTCAGA
TCAATGAGTTGGGATCATCG

Downstream 100 bases:

>100_bases
CCTTCGCCGGCCGGCGCGATCATTCACCGGCTGCGTTGCGAGACAGCTCCCGCAGCAGCCGCATCGCCTCGTCGCCCTGC
GCTTCGGGGACGAACAGATG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MHPPTLRQLQQLVYLAEERHFARAAKRAHVTQSALSRSLQTLEQSAGMRLFDRSSRAVEITAVGERLVARARSLLSGADD
IGREMRLLRSGDAGEVTVGVGAFTGLTLLPDAMARLYSDHPSVRITVVQDNWRALMEVLQQGKLDFFLAHITDIRADDSL
DIEPLGSLPGHFYCRPSHPLASRRELLARDLAGQHFASVALPPEFSRRLDELIAAPGGRGFDVALESENAGLLVQMALRS
DVVLVAGDAVLTHELASGQLVRLNVVELREPRATNLLLAQFGILRLKGRTLSPAAMMLIEMVRAQAARTLTGPRRPPASR
AIGGAHRSRPSPRKKPSAPPRNQSRHHTRGKT

Sequences:

>Translated_352_residues
MHPPTLRQLQQLVYLAEERHFARAAKRAHVTQSALSRSLQTLEQSAGMRLFDRSSRAVEITAVGERLVARARSLLSGADD
IGREMRLLRSGDAGEVTVGVGAFTGLTLLPDAMARLYSDHPSVRITVVQDNWRALMEVLQQGKLDFFLAHITDIRADDSL
DIEPLGSLPGHFYCRPSHPLASRRELLARDLAGQHFASVALPPEFSRRLDELIAAPGGRGFDVALESENAGLLVQMALRS
DVVLVAGDAVLTHELASGQLVRLNVVELREPRATNLLLAQFGILRLKGRTLSPAAMMLIEMVRAQAARTLTGPRRPPASR
AIGGAHRSRPSPRKKPSAPPRNQSRHHTRGKT
>Mature_352_residues
MHPPTLRQLQQLVYLAEERHFARAAKRAHVTQSALSRSLQTLEQSAGMRLFDRSSRAVEITAVGERLVARARSLLSGADD
IGREMRLLRSGDAGEVTVGVGAFTGLTLLPDAMARLYSDHPSVRITVVQDNWRALMEVLQQGKLDFFLAHITDIRADDSL
DIEPLGSLPGHFYCRPSHPLASRRELLARDLAGQHFASVALPPEFSRRLDELIAAPGGRGFDVALESENAGLLVQMALRS
DVVLVAGDAVLTHELASGQLVRLNVVELREPRATNLLLAQFGILRLKGRTLSPAAMMLIEMVRAQAARTLTGPRRPPASR
AIGGAHRSRPSPRKKPSAPPRNQSRHHTRGKT

Specific function: Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=194, Percent_Identity=27.8350515463918, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787879, Length=200, Percent_Identity=34, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787601, Length=181, Percent_Identity=27.0718232044199, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790399, Length=197, Percent_Identity=31.4720812182741, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081904, Length=263, Percent_Identity=25.4752851711027, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=313, Percent_Identity=26.517571884984, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790208, Length=144, Percent_Identity=32.6388888888889, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786713, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082024, Length=196, Percent_Identity=27.0408163265306, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=232, Percent_Identity=27.1551724137931, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788887, Length=214, Percent_Identity=29.4392523364486, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI2367136, Length=140, Percent_Identity=30.7142857142857, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38558; Mature: 38558

Theoretical pI: Translated: 11.43; Mature: 11.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPPTLRQLQQLVYLAEERHFARAAKRAHVTQSALSRSLQTLEQSAGMRLFDRSSRAVEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEE
TAVGERLVARARSLLSGADDIGREMRLLRSGDAGEVTVGVGAFTGLTLLPDAMARLYSDH
EHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHCCC
PSVRITVVQDNWRALMEVLQQGKLDFFLAHITDIRADDSLDIEPLGSLPGHFYCRPSHPL
CCEEEEEEECCHHHHHHHHHCCCHHEEHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCH
ASRRELLARDLAGQHFASVALPPEFSRRLDELIAAPGGRGFDVALESENAGLLVQMALRS
HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCC
DVVLVAGDAVLTHELASGQLVRLNVVELREPRATNLLLAQFGILRLKGRTLSPAAMMLIE
CEEEEECCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCHHEECCCCCCHHHHHHHH
MVRAQAARTLTGPRRPPASRAIGGAHRSRPSPRKKPSAPPRNQSRHHTRGKT
HHHHHHHHHCCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHPPTLRQLQQLVYLAEERHFARAAKRAHVTQSALSRSLQTLEQSAGMRLFDRSSRAVEI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEE
TAVGERLVARARSLLSGADDIGREMRLLRSGDAGEVTVGVGAFTGLTLLPDAMARLYSDH
EHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHCCC
PSVRITVVQDNWRALMEVLQQGKLDFFLAHITDIRADDSLDIEPLGSLPGHFYCRPSHPL
CCEEEEEEECCHHHHHHHHHCCCHHEEHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCH
ASRRELLARDLAGQHFASVALPPEFSRRLDELIAAPGGRGFDVALESENAGLLVQMALRS
HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCC
DVVLVAGDAVLTHELASGQLVRLNVVELREPRATNLLLAQFGILRLKGRTLSPAAMMLIE
CEEEEECCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCHHEECCCCCCHHHHHHHH
MVRAQAARTLTGPRRPPASRAIGGAHRSRPSPRKKPSAPPRNQSRHHTRGKT
HHHHHHHHHCCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587481 [H]