| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146341161
Identifier: 146341161
GI number: 146341161
Start: 4435445
End: 4436623
Strand: Reverse
Name: 146341161
Synonym: BRADO4233
Alternate gene names: NA
Gene position: 4436623-4435445 (Counterclockwise)
Preceding gene: 146341162
Following gene: 146341157
Centisome position: 59.5
GC content: 65.99
Gene sequence:
>1179_bases ATGACGTCATCCAAGTTCGACCTCGTCGTCTACGGCGCCACCGGCTTCACGGGCAAGCTCGTCGCCGAATATCTTGCTAC GCAGTATCGCCACGACGGCTCGCTGCGCTGGGCGATGGCCGGCCGGAGCCTGGACAAGCTCGCCGCCGTGCGCGACGAGA TCGGCGCGCCGGCCGACACGCCGCTGATCGCGGCCGATGCATCGAATCCTGCATCGTTGAAAGCCATGGTGGCGCAGACC AGGCTGGTGCTCACCACCGTCGGTCCCTATCAGCTCTATGGCAACGAACTGGTCGCGCTCTGCGCCGAAACCGGCACAGA CTACGTCGATCTCTGCGGCGAGCCGGTGTGGATGCGGCAGATGATCGACAAGCACCAGGCGACCGCCGAACAGAGCGGCG CCCGCATCGTGTTCTCCTGCGGCTTCGATTCCGTGCCGTTCGAGCTCGGCGTCTACTTCGTTCAGCAGCAGGCGAAAAAG GTCCTCGGCGCCCCGGCCGCCCGCGTGAAGGGCCGCGTCCGCGGCATGAGCGGCACGCTGTCGGGCGGCACGGCCGCGAG CGCCAAGGCGACCTTCGATGCGGTGGCCCAGGATCTCAGCCTGGTGGCGATCCTGAAGGATTTCTTCGCGCTGACGCCGG GCTTCAAGGGCCCCAAGCAGCCGGCCGGCAACAAGCCTGTTTATGAGGAGGATCTGCAATCCTGGGCGGCGCCTTTCATG ATGGCGCTGATCAACACCCGCAACGTCCACCGCTCCAACATGCTGATGGGTTTCCCCTACGGCCAGGACTTCGTCTACGA CGAGATGGTGCTGACAGGTGCGGGCGAGAAGGGCGAGGCCAACGCCAAGAAGGTGATGGCGGCGAATGCCGAGAAAACCG GCCCGAACGCGCCGAAGCCGGGCGAGGGCCCCTCCAAGGAGGAGCGCGACAACGGCTACTACAACATCCTCTTTGTCGCG ATCGGCCCCGACGGCCGCCAGGTCCGCGCCACCGTCAAGGGCGACCGCGATCCCGGCTACGGCTCCACCTCGAAGATGAT CAGCGAATGCGCCATCGGCCTTTTGCGCGATGGCGCCAGTGTGAAGGGCGGCTTCTGGACCCCGGGCGCCGCGCTGCAGG ACAGCCTGATCAAGCGTCTGGTCGACAATGCCGGCCTGACGTTCACGGTGGAGGATTAG
Upstream 100 bases:
>100_bases GAAGCGAAGCAATCCAGAGTCCCGTCCCCCGCCCTGGATTGCTTCGCTTTGCCCGCAATGACGGGGCAACCGTTTTGCAG CTGATCTCCAGGGAACAAGA
Downstream 100 bases:
>100_bases GAGACCGCGTGCGAGCCGATCGATGCTGATCGGCTCGCCTCCGCCTGGTGTGCGCGGGTGGCGGCGATCATGCCCCACAT CGTGCCGAGCATCAGGAAGA
Product: putative saccharopine dehydrogenase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MTSSKFDLVVYGATGFTGKLVAEYLATQYRHDGSLRWAMAGRSLDKLAAVRDEIGAPADTPLIAADASNPASLKAMVAQT RLVLTTVGPYQLYGNELVALCAETGTDYVDLCGEPVWMRQMIDKHQATAEQSGARIVFSCGFDSVPFELGVYFVQQQAKK VLGAPAARVKGRVRGMSGTLSGGTAASAKATFDAVAQDLSLVAILKDFFALTPGFKGPKQPAGNKPVYEEDLQSWAAPFM MALINTRNVHRSNMLMGFPYGQDFVYDEMVLTGAGEKGEANAKKVMAANAEKTGPNAPKPGEGPSKEERDNGYYNILFVA IGPDGRQVRATVKGDRDPGYGSTSKMISECAIGLLRDGASVKGGFWTPGAALQDSLIKRLVDNAGLTFTVED
Sequences:
>Translated_392_residues MTSSKFDLVVYGATGFTGKLVAEYLATQYRHDGSLRWAMAGRSLDKLAAVRDEIGAPADTPLIAADASNPASLKAMVAQT RLVLTTVGPYQLYGNELVALCAETGTDYVDLCGEPVWMRQMIDKHQATAEQSGARIVFSCGFDSVPFELGVYFVQQQAKK VLGAPAARVKGRVRGMSGTLSGGTAASAKATFDAVAQDLSLVAILKDFFALTPGFKGPKQPAGNKPVYEEDLQSWAAPFM MALINTRNVHRSNMLMGFPYGQDFVYDEMVLTGAGEKGEANAKKVMAANAEKTGPNAPKPGEGPSKEERDNGYYNILFVA IGPDGRQVRATVKGDRDPGYGSTSKMISECAIGLLRDGASVKGGFWTPGAALQDSLIKRLVDNAGLTFTVED >Mature_391_residues TSSKFDLVVYGATGFTGKLVAEYLATQYRHDGSLRWAMAGRSLDKLAAVRDEIGAPADTPLIAADASNPASLKAMVAQTR LVLTTVGPYQLYGNELVALCAETGTDYVDLCGEPVWMRQMIDKHQATAEQSGARIVFSCGFDSVPFELGVYFVQQQAKKV LGAPAARVKGRVRGMSGTLSGGTAASAKATFDAVAQDLSLVAILKDFFALTPGFKGPKQPAGNKPVYEEDLQSWAAPFMM ALINTRNVHRSNMLMGFPYGQDFVYDEMVLTGAGEKGEANAKKVMAANAEKTGPNAPKPGEGPSKEERDNGYYNILFVAI GPDGRQVRATVKGDRDPGYGSTSKMISECAIGLLRDGASVKGGFWTPGAALQDSLIKRLVDNAGLTFTVED
Specific function: Unknown
COG id: COG3268
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the saccharopine dehydrogenase family. Enoyl reductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI55770836, Length=428, Percent_Identity=28.7383177570093, Blast_Score=126, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17560066, Length=435, Percent_Identity=28.5057471264368, Blast_Score=138, Evalue=4e-33, Organism=Caenorhabditis elegans, GI32567112, Length=248, Percent_Identity=34.2741935483871, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI71991033, Length=159, Percent_Identity=32.7044025157233, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24646278, Length=437, Percent_Identity=27.9176201372998, Blast_Score=133, Evalue=2e-31, Organism=Drosophila melanogaster, GI24644140, Length=169, Percent_Identity=38.4615384615385, Blast_Score=132, Evalue=6e-31, Organism=Drosophila melanogaster, GI24644142, Length=169, Percent_Identity=38.4615384615385, Blast_Score=132, Evalue=6e-31, Organism=Drosophila melanogaster, GI21356081, Length=169, Percent_Identity=38.4615384615385, Blast_Score=132, Evalue=6e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR005097 [H]
Pfam domain/function: PF03435 Saccharop_dh [H]
EC number: NA
Molecular weight: Translated: 41792; Mature: 41661
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSKFDLVVYGATGFTGKLVAEYLATQYRHDGSLRWAMAGRSLDKLAAVRDEIGAPADT CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCC PLIAADASNPASLKAMVAQTRLVLTTVGPYQLYGNELVALCAETGTDYVDLCGEPVWMRQ CEEEECCCCCHHHHHHHHHHEEEEEECCCHHHHCCHHHHHHHHCCCCHHHHCCCHHHHHH MIDKHQATAEQSGARIVFSCGFDSVPFELGVYFVQQQAKKVLGAPAARVKGRVRGMSGTL HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC SGGTAASAKATFDAVAQDLSLVAILKDFFALTPGFKGPKQPAGNKPVYEEDLQSWAAPFM CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH MALINTRNVHRSNMLMGFPYGQDFVYDEMVLTGAGEKGEANAKKVMAANAEKTGPNAPKP HHHHHCCCCCCCCEEEECCCCCCHHECCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCC GEGPSKEERDNGYYNILFVAIGPDGRQVRATVKGDRDPGYGSTSKMISECAIGLLRDGAS CCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC VKGGFWTPGAALQDSLIKRLVDNAGLTFTVED CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC >Mature Secondary Structure TSSKFDLVVYGATGFTGKLVAEYLATQYRHDGSLRWAMAGRSLDKLAAVRDEIGAPADT CCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCC PLIAADASNPASLKAMVAQTRLVLTTVGPYQLYGNELVALCAETGTDYVDLCGEPVWMRQ CEEEECCCCCHHHHHHHHHHEEEEEECCCHHHHCCHHHHHHHHCCCCHHHHCCCHHHHHH MIDKHQATAEQSGARIVFSCGFDSVPFELGVYFVQQQAKKVLGAPAARVKGRVRGMSGTL HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC SGGTAASAKATFDAVAQDLSLVAILKDFFALTPGFKGPKQPAGNKPVYEEDLQSWAAPFM CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH MALINTRNVHRSNMLMGFPYGQDFVYDEMVLTGAGEKGEANAKKVMAANAEKTGPNAPKP HHHHHCCCCCCCCEEEECCCCCCHHECCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCC GEGPSKEERDNGYYNILFVAIGPDGRQVRATVKGDRDPGYGSTSKMISECAIGLLRDGAS CCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC VKGGFWTPGAALQDSLIKRLVDNAGLTFTVED CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]