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The map label for this gene is yncD [C]

Identifier: 146341086

GI number: 146341086

Start: 4357097

End: 4359571

Strand: Reverse

Name: yncD [C]

Synonym: BRADO4157

Alternate gene names: 146341086

Gene position: 4359571-4357097 (Counterclockwise)

Preceding gene: 146341087

Following gene: 146341085

Centisome position: 58.47

GC content: 61.66

Gene sequence:

>2475_bases
ATGTTTCGTCATCACGCCCTCGGCGGCGTCAGCGTGGTCGCTTTGCAGCTCGCGCTGCTGCAGCCGGCCACGATCGCGCA
CGCCCAGCCCGCAGGGGAACTGCCATCCGTCACCGTCGACGCCCCGCGCGCCGCGCCCCAACGCCCTGCGCGCAAGCCGG
CGGGACAGGCGCGTCGGGCCACGGCGGCCCGCGCATCAAAACCGGCCGCGACGCCGCAGCCGGCAGCGTCACCGGCCTCG
ACCGCCAACATCGACGGCGGCGGGGTCAAGGGCTCGTTCGAGACGCCCGCGGCCAAGCAGCGCTTCGCGCTGCCGCAGGA
GAGCTTCAGCATCACCGCCAAGCAGATCGACGAGACGATCAACCTCAAGGATCCGGAGGACGCGGTCAAATACATGCCGA
GCCTGTTCGTCCGCAAACGCAATGACGGCGACAATCAGGCGGTGCTGGCGACGCGGACGTGGGGCCTGAACTCCAGCGCC
CGCACGCTGATCTACTATGACGACCTGCTGGTCTCGACGCTGCTCGGCAACAACAACAGCGCAGCCTCGCCGAAATGGAA
CCTGATCTCGCCAGAGGCGATCGCGCGGGTCGATTTTCTCAACGGTCCGTTCTCGGCCGCCTATCCCGGCAACTCGATCG
GCGGCGTCTTGCTGATCACCTCGAAGATGCCGGACAAGCCGTTCGCGACGGTCAAAGAGACCGTCTCGGTGATGCCGTGG
AGCCAGTACGGCACCAAGGACACCTATGTCACCAGCCAGACCAGCGCGTCGGCCGGGAATCGTGATGGCAAGCTGTCCTG
GCTGGTGAGTGCCAATTACCTCGACAGCTACCAGCAGCCGCTGACTTATACGACGATTTCATCGCTGACTTCGATTCCTA
CGACGACAACTGGCGCCTTCCCGGCCAGGAGCAAGACTGGGACCGAAGCCGACGTAGTGGGTACCGGTGTACTCGCGCAC
TCGCAGCAGACCTCCGGCAATCTGCGGCTCGCCTACGATGTTAGCCCGCTGGTGCAGGCAACATATTCGCTCGGCATCTG
GAACAATCACCAAGTCTCGACGCCACAGACCTATCTGCGTGATGCCAATGGGCAGCTGACCTTCAACAATATCAGTACAT
TCGCCAGCGGGCGCTATATCTGGGATCAAACCCAGATGTCGAACGCCATCGCGCTCAAGAGCGACACCAGGGGCACCTTC
GACTTCGATCTATCGGCGTCGAGCTACAACTACCTGCAGGATGCCCAGCTCAATCCTTATACGGTGACCGCCACTGGGAC
CGGGTACTCGCAGAAGGGCAAGATCGCGCGCCTTGATGGCACGAACTGGCAGAACGCCGACGCCAAAGGCATCTGGCGGC
CATTCGGCTATGACGGGCCACACGAAGTCTCCTTCGGCCTGCACGGCGACCGGTACCGTTTGGAGAACCCGACCTATGCA
ACGACAGTCTGGGACCAGGCGACGTCGACCGGCACGGGCCAGCTGTATGCAACCGGTGTCGGCGAGACCCGCACCGGCGC
GCTCTGGGTTCAGGATGCCTGGAAGATCCTGCCCGATCTGAAGCTGACGCTAGGCGGACGCCTGGAGACGTGGCGCGCAT
TGGACGGCTTCAACGTGAACACCATTCAAAGCGCTGCTGGAGCAATCACCCAGTCGCTGGTGACAACCCAGCCGCAGCTT
TCTGCGACCAAGTTTTCGCCGAAGGCATCACTCTCTTACGACCTTAACCGCGACTGGAACGTGACCGCCAATTTCGGTGA
GGCTTACCGTTTCCCCACCGTGGGAGAGTTGTACCAGAACCTCGCGGTGGGGACTAATATCTTTCTGCCGAACCCGCTAC
TGAAACCCGAGCATGACTACACCGGGGAGCTGAACCTCGAGCGTCACTGGAGCGACGGCCGCGTTCGGCTCACGCTGTTC
CAGGAAAAGACTTTCGATGCGCTGATTTCCCAGTCGACCCTGGTGACCAATAATACAAACGGTCAGCAGGTCACTCAGAC
GGCTGTGAGTAACGTCGACGCGATCCGCATGCGCGGCGTCGAACTGTCCGCCGACAAGGACAACGTCCTGGTTAATGGCC
TCCAGCTATTCGGCAGTGTCACGTATGTCGACTCCAAGATCCTGGCCGATGCGAAATGGAGTGCCGCAACCACCGTGGTC
GGCAAGCGCGTGCCCTACGTGCCGGACTGGCGCGCCAAGTTCGGCGCAACCTACCGGCCGAACGAGAGCTGGGCCTATAC
GGTCGCGGCACGCTACAGTGGCAAGCAATATTCGACGCTGGACAACACCGACATCATTCCGCACGTCTACGGCGCCTTCG
ACAGCTTCTTCCTCGTCGACATGAAGATCCACTACAATGCGACGAAGAATTTCGCCTTCGATTTCGGCATCGATAACCTT
TTCAATCAGCAATACACGCTGTTCCATCCCTTCCCGGGGCGCACCTTCGTGCTCGCGGCCAAATACACGTTCTGA

Upstream 100 bases:

>100_bases
CCGCGCACGCCTGACGGACACGTCGCCAGCGGCGCAGCCGCGTCGCTTTGCATCTGATCAGGAAGACCGGCCATGGGAGC
CGGCATTGGGGAAGTCTCAT

Downstream 100 bases:

>100_bases
GGTGATCATGAGCATTCCCAGCAGGAAGATGTCGTGGCTCGTATCGGTCGCAGTCCTGGCGACGGCAAACGCGTCAGCCG
ACGCGCATGTGATCCTGGAG

Product: putative TonB dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Protein; Nb-Dependent Receptor; NB Dependent Receptor; NB-Dependent Receptor Plug; Outer Membrane Receptor Protein; NB-Dependent Receptor Plug Domain-Containing; Ferrisiderophore Receptor Protein; NB-Dependent Siderophore Receptor; NB-Dependent Receptor Domain Protein; Fe Transport Outer Membrane Receptor Protein

Number of amino acids: Translated: 824; Mature: 824

Protein sequence:

>824_residues
MFRHHALGGVSVVALQLALLQPATIAHAQPAGELPSVTVDAPRAAPQRPARKPAGQARRATAARASKPAATPQPAASPAS
TANIDGGGVKGSFETPAAKQRFALPQESFSITAKQIDETINLKDPEDAVKYMPSLFVRKRNDGDNQAVLATRTWGLNSSA
RTLIYYDDLLVSTLLGNNNSAASPKWNLISPEAIARVDFLNGPFSAAYPGNSIGGVLLITSKMPDKPFATVKETVSVMPW
SQYGTKDTYVTSQTSASAGNRDGKLSWLVSANYLDSYQQPLTYTTISSLTSIPTTTTGAFPARSKTGTEADVVGTGVLAH
SQQTSGNLRLAYDVSPLVQATYSLGIWNNHQVSTPQTYLRDANGQLTFNNISTFASGRYIWDQTQMSNAIALKSDTRGTF
DFDLSASSYNYLQDAQLNPYTVTATGTGYSQKGKIARLDGTNWQNADAKGIWRPFGYDGPHEVSFGLHGDRYRLENPTYA
TTVWDQATSTGTGQLYATGVGETRTGALWVQDAWKILPDLKLTLGGRLETWRALDGFNVNTIQSAAGAITQSLVTTQPQL
SATKFSPKASLSYDLNRDWNVTANFGEAYRFPTVGELYQNLAVGTNIFLPNPLLKPEHDYTGELNLERHWSDGRVRLTLF
QEKTFDALISQSTLVTNNTNGQQVTQTAVSNVDAIRMRGVELSADKDNVLVNGLQLFGSVTYVDSKILADAKWSAATTVV
GKRVPYVPDWRAKFGATYRPNESWAYTVAARYSGKQYSTLDNTDIIPHVYGAFDSFFLVDMKIHYNATKNFAFDFGIDNL
FNQQYTLFHPFPGRTFVLAAKYTF

Sequences:

>Translated_824_residues
MFRHHALGGVSVVALQLALLQPATIAHAQPAGELPSVTVDAPRAAPQRPARKPAGQARRATAARASKPAATPQPAASPAS
TANIDGGGVKGSFETPAAKQRFALPQESFSITAKQIDETINLKDPEDAVKYMPSLFVRKRNDGDNQAVLATRTWGLNSSA
RTLIYYDDLLVSTLLGNNNSAASPKWNLISPEAIARVDFLNGPFSAAYPGNSIGGVLLITSKMPDKPFATVKETVSVMPW
SQYGTKDTYVTSQTSASAGNRDGKLSWLVSANYLDSYQQPLTYTTISSLTSIPTTTTGAFPARSKTGTEADVVGTGVLAH
SQQTSGNLRLAYDVSPLVQATYSLGIWNNHQVSTPQTYLRDANGQLTFNNISTFASGRYIWDQTQMSNAIALKSDTRGTF
DFDLSASSYNYLQDAQLNPYTVTATGTGYSQKGKIARLDGTNWQNADAKGIWRPFGYDGPHEVSFGLHGDRYRLENPTYA
TTVWDQATSTGTGQLYATGVGETRTGALWVQDAWKILPDLKLTLGGRLETWRALDGFNVNTIQSAAGAITQSLVTTQPQL
SATKFSPKASLSYDLNRDWNVTANFGEAYRFPTVGELYQNLAVGTNIFLPNPLLKPEHDYTGELNLERHWSDGRVRLTLF
QEKTFDALISQSTLVTNNTNGQQVTQTAVSNVDAIRMRGVELSADKDNVLVNGLQLFGSVTYVDSKILADAKWSAATTVV
GKRVPYVPDWRAKFGATYRPNESWAYTVAARYSGKQYSTLDNTDIIPHVYGAFDSFFLVDMKIHYNATKNFAFDFGIDNL
FNQQYTLFHPFPGRTFVLAAKYTF
>Mature_824_residues
MFRHHALGGVSVVALQLALLQPATIAHAQPAGELPSVTVDAPRAAPQRPARKPAGQARRATAARASKPAATPQPAASPAS
TANIDGGGVKGSFETPAAKQRFALPQESFSITAKQIDETINLKDPEDAVKYMPSLFVRKRNDGDNQAVLATRTWGLNSSA
RTLIYYDDLLVSTLLGNNNSAASPKWNLISPEAIARVDFLNGPFSAAYPGNSIGGVLLITSKMPDKPFATVKETVSVMPW
SQYGTKDTYVTSQTSASAGNRDGKLSWLVSANYLDSYQQPLTYTTISSLTSIPTTTTGAFPARSKTGTEADVVGTGVLAH
SQQTSGNLRLAYDVSPLVQATYSLGIWNNHQVSTPQTYLRDANGQLTFNNISTFASGRYIWDQTQMSNAIALKSDTRGTF
DFDLSASSYNYLQDAQLNPYTVTATGTGYSQKGKIARLDGTNWQNADAKGIWRPFGYDGPHEVSFGLHGDRYRLENPTYA
TTVWDQATSTGTGQLYATGVGETRTGALWVQDAWKILPDLKLTLGGRLETWRALDGFNVNTIQSAAGAITQSLVTTQPQL
SATKFSPKASLSYDLNRDWNVTANFGEAYRFPTVGELYQNLAVGTNIFLPNPLLKPEHDYTGELNLERHWSDGRVRLTLF
QEKTFDALISQSTLVTNNTNGQQVTQTAVSNVDAIRMRGVELSADKDNVLVNGLQLFGSVTYVDSKILADAKWSAATTVV
GKRVPYVPDWRAKFGATYRPNESWAYTVAARYSGKQYSTLDNTDIIPHVYGAFDSFFLVDMKIHYNATKNFAFDFGIDNL
FNQQYTLFHPFPGRTFVLAAKYTF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787723, Length=270, Percent_Identity=25.5555555555556, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 89937; Mature: 89937

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRHHALGGVSVVALQLALLQPATIAHAQPAGELPSVTVDAPRAAPQRPARKPAGQARRA
CCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH
TAARASKPAATPQPAASPASTANIDGGGVKGSFETPAAKQRFALPQESFSITAKQIDETI
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHEEEHHHHCCCC
NLKDPEDAVKYMPSLFVRKRNDGDNQAVLATRTWGLNSSARTLIYYDDLLVSTLLGNNNS
CCCCHHHHHHHHHHHEEEECCCCCCEEEEEEEECCCCCCCEEEEEEHHHHHHHHHCCCCC
AASPKWNLISPEAIARVDFLNGPFSAAYPGNSIGGVLLITSKMPDKPFATVKETVSVMPW
CCCCCCCCCCHHHHEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCC
SQYGTKDTYVTSQTSASAGNRDGKLSWLVSANYLDSYQQPLTYTTISSLTSIPTTTTGAF
HHCCCCCCEEECCCCCCCCCCCCEEEEEEECHHHHHHCCCCEEEEHHHHHCCCCCCCCCC
PARSKTGTEADVVGTGVLAHSQQTSGNLRLAYDVSPLVQATYSLGIWNNHQVSTPQTYLR
CCCCCCCCCCCEEECEEEEECCCCCCCEEEEEECCHHHHHHEEEECCCCCCCCCCHHHHH
DANGQLTFNNISTFASGRYIWDQTQMSNAIALKSDTRGTFDFDLSASSYNYLQDAQLNPY
CCCCEEEECCCHHHHCCCEEEEHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCE
TVTATGTGYSQKGKIARLDGTNWQNADAKGIWRPFGYDGPHEVSFGLHGDRYRLENPTYA
EEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCEEE
TTVWDQATSTGTGQLYATGVGETRTGALWVQDAWKILPDLKLTLGGRLETWRALDGFNVN
EEEECCCCCCCCCEEEEECCCCCCCCEEEECHHHHHCCCEEEEECCCCCEEECCCCCCCH
TIQSAAGAITQSLVTTQPQLSATKFSPKASLSYDLNRDWNVTANFGEAYRFPTVGELYQN
HHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEECCCCCEEEECCCCCCCCCCHHHHHHH
LAVGTNIFLPNPLLKPEHDYTGELNLERHWSDGRVRLTLFQEKTFDALISQSTLVTNNTN
HHCCCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHCCCEEEECCCC
GQQVTQTAVSNVDAIRMRGVELSADKDNVLVNGLQLFGSVTYVDSKILADAKWSAATTVV
CHHHHHHHHCCCCEEEEECEEEECCCCCEEEEEHHHHEEEEEECCCCEECCCCCHHHHHH
GKRVPYVPDWRAKFGATYRPNESWAYTVAARYSGKQYSTLDNTDIIPHVYGAFDSFFLVD
CCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEECCCEECCCCCCCCCHHHHHCCCCEEEEE
MKIHYNATKNFAFDFGIDNLFNQQYTLFHPFPGRTFVLAAKYTF
EEEEECCCCCEEEECCCHHHCCCCEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MFRHHALGGVSVVALQLALLQPATIAHAQPAGELPSVTVDAPRAAPQRPARKPAGQARRA
CCCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHH
TAARASKPAATPQPAASPASTANIDGGGVKGSFETPAAKQRFALPQESFSITAKQIDETI
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHEEEHHHHCCCC
NLKDPEDAVKYMPSLFVRKRNDGDNQAVLATRTWGLNSSARTLIYYDDLLVSTLLGNNNS
CCCCHHHHHHHHHHHEEEECCCCCCEEEEEEEECCCCCCCEEEEEEHHHHHHHHHCCCCC
AASPKWNLISPEAIARVDFLNGPFSAAYPGNSIGGVLLITSKMPDKPFATVKETVSVMPW
CCCCCCCCCCHHHHEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCC
SQYGTKDTYVTSQTSASAGNRDGKLSWLVSANYLDSYQQPLTYTTISSLTSIPTTTTGAF
HHCCCCCCEEECCCCCCCCCCCCEEEEEEECHHHHHHCCCCEEEEHHHHHCCCCCCCCCC
PARSKTGTEADVVGTGVLAHSQQTSGNLRLAYDVSPLVQATYSLGIWNNHQVSTPQTYLR
CCCCCCCCCCCEEECEEEEECCCCCCCEEEEEECCHHHHHHEEEECCCCCCCCCCHHHHH
DANGQLTFNNISTFASGRYIWDQTQMSNAIALKSDTRGTFDFDLSASSYNYLQDAQLNPY
CCCCEEEECCCHHHHCCCEEEEHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCE
TVTATGTGYSQKGKIARLDGTNWQNADAKGIWRPFGYDGPHEVSFGLHGDRYRLENPTYA
EEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCEEE
TTVWDQATSTGTGQLYATGVGETRTGALWVQDAWKILPDLKLTLGGRLETWRALDGFNVN
EEEECCCCCCCCCEEEEECCCCCCCCEEEECHHHHHCCCEEEEECCCCCEEECCCCCCCH
TIQSAAGAITQSLVTTQPQLSATKFSPKASLSYDLNRDWNVTANFGEAYRFPTVGELYQN
HHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEECCCCCEEEECCCCCCCCCCHHHHHHH
LAVGTNIFLPNPLLKPEHDYTGELNLERHWSDGRVRLTLFQEKTFDALISQSTLVTNNTN
HHCCCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHCCCEEEECCCC
GQQVTQTAVSNVDAIRMRGVELSADKDNVLVNGLQLFGSVTYVDSKILADAKWSAATTVV
CHHHHHHHHCCCCEEEEECEEEECCCCCEEEEEHHHHEEEEEECCCCEECCCCCHHHHHH
GKRVPYVPDWRAKFGATYRPNESWAYTVAARYSGKQYSTLDNTDIIPHVYGAFDSFFLVD
CCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEECCCEECCCCCCCCCHHHHHCCCCEEEEE
MKIHYNATKNFAFDFGIDNLFNQQYTLFHPFPGRTFVLAAKYTF
EEEEECCCCCEEEECCCHHHCCCCEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA