Click here to switch to the map view.

The map label for this gene is ynfM [H]

Identifier: 146341029

GI number: 146341029

Start: 4289973

End: 4291193

Strand: Reverse

Name: ynfM [H]

Synonym: BRADO4100

Alternate gene names: 146341029

Gene position: 4291193-4289973 (Counterclockwise)

Preceding gene: 146341030

Following gene: 146341027

Centisome position: 57.55

GC content: 68.3

Gene sequence:

>1221_bases
ATGCACCAGCCCGTCGCCAAGCCGTCTGATCAAAAGTCCGCTGACAACAAGTTTCCGCCGGCCGTCAACATCATCGCCTT
GGCTGGCTTCTCCGCGGCGCTGTCGACGCGCGCGCTCGATCCGGTGCTGCCGCATGTCGCCGAGGATTTTGCGATCAGCA
TCGCGACCGCCGCCGGCATCGCCGCCGGCTATGCGTTGATCTACGCGCTGATCCAGCCAGCGATCGGCGCCGCGGCCGAC
CTGTTCGGCAAGGCGCGGCTGATGACCTTGTGCCTGGCGCTGCTCGGCGTCGCCAGCGTGCTCGGCGCGCTCGCGACCTC
GTTTCCGCTGCTGTTCGCGACCCGCATCCTTGCCGGCATCGCCTCGGGCGGCGTGTTTCCGGTGGCGCTGGGTCTGACGG
CCGATCTCGTCGCGCCCGACAAGCGCCAGGTCGCGATCGGCCGCACGCTCGCGGGCTCGATGGCCGGCAATCTGCTCGGC
GCCACGGCGTCCGGCATCATCGGCGATTTCATCGGCTGGCGCGGCGTGCTCGCGATCCTCGGCGCGCTCGGGCTGATCGC
CTCCTTCGCGGTCGCCGCCGGCTTCCGCGGCGCCAAGGTCACGCATGCCGCGACCACCGATCTCGCCACCCTGAAGAAGG
GATACGGCATCATCTTCAGGAACCCCAACACGCGCTTCTGCTACTCGGCGGTGTTCGTCGAAGGCTGCTGCGTGTTCGGG
CTGTTTCCGTTCATCGCCGCGTTCCTGTTCGATCTCGGCGAGACCTCGCTGTCGATCGCCGGCATCGTCATCGCGGGATT
TGCGGTCGGCGGGCTGTTCTACACGGCCACGGTGTCGAGCTTCCTGCCGCGGCTCGGCGTCAAGGGCATGATGATCGTGG
GTGCTGCCCTGGTGGCCCTGCAACTCGCCGCGCTCGCCTTCGGTCCCGGCTGGAAGCTGCAATTCGCCTGCATGCTGATG
ATGGGCTGGGGCTTCTACATGATCCATGGCTGCCTGCAGGTGTTCGCCAGCGAGTTGTCGATCGGCGCCCGCGCCACCGC
GATGTCGCTGCACTCGTTCTTTTTCTTCCTCGGCCAGACCGTCGGCCCGATCGCCTACGGCTTCGGCGTCGTCCATGGCG
GCAAGCAGCCGACACTGCTCGCCGCCGCCGTCCTGATGGTCGCGCTCGGCTTCGCCTGCGCCGCGCTGCTGCGGCAACGC
CCGCCGGCGGATGCGGCGTAG

Upstream 100 bases:

>100_bases
GGCCGAACATGGTGCCGCTGGCGCAGTTCGAGGGACTGTTGCGGACGCTGATGGCGTTCGATGCGCTCGCCAAGGGGCAG
GCTGCGGACGCCATCCGCTG

Downstream 100 bases:

>100_bases
CATGTCCGATCGAGCCCCGATCTGAGCGGCGCAGTTGGTCGTCGTCCGCGGTGCTGGGTCTGCGCTGAAACATGACCCGG
GGGCACTTTCGTTGCTGGCC

Product: major facilitator superfamily permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MHQPVAKPSDQKSADNKFPPAVNIIALAGFSAALSTRALDPVLPHVAEDFAISIATAAGIAAGYALIYALIQPAIGAAAD
LFGKARLMTLCLALLGVASVLGALATSFPLLFATRILAGIASGGVFPVALGLTADLVAPDKRQVAIGRTLAGSMAGNLLG
ATASGIIGDFIGWRGVLAILGALGLIASFAVAAGFRGAKVTHAATTDLATLKKGYGIIFRNPNTRFCYSAVFVEGCCVFG
LFPFIAAFLFDLGETSLSIAGIVIAGFAVGGLFYTATVSSFLPRLGVKGMMIVGAALVALQLAALAFGPGWKLQFACMLM
MGWGFYMIHGCLQVFASELSIGARATAMSLHSFFFFLGQTVGPIAYGFGVVHGGKQPTLLAAAVLMVALGFACAALLRQR
PPADAA

Sequences:

>Translated_406_residues
MHQPVAKPSDQKSADNKFPPAVNIIALAGFSAALSTRALDPVLPHVAEDFAISIATAAGIAAGYALIYALIQPAIGAAAD
LFGKARLMTLCLALLGVASVLGALATSFPLLFATRILAGIASGGVFPVALGLTADLVAPDKRQVAIGRTLAGSMAGNLLG
ATASGIIGDFIGWRGVLAILGALGLIASFAVAAGFRGAKVTHAATTDLATLKKGYGIIFRNPNTRFCYSAVFVEGCCVFG
LFPFIAAFLFDLGETSLSIAGIVIAGFAVGGLFYTATVSSFLPRLGVKGMMIVGAALVALQLAALAFGPGWKLQFACMLM
MGWGFYMIHGCLQVFASELSIGARATAMSLHSFFFFLGQTVGPIAYGFGVVHGGKQPTLLAAAVLMVALGFACAALLRQR
PPADAA
>Mature_406_residues
MHQPVAKPSDQKSADNKFPPAVNIIALAGFSAALSTRALDPVLPHVAEDFAISIATAAGIAAGYALIYALIQPAIGAAAD
LFGKARLMTLCLALLGVASVLGALATSFPLLFATRILAGIASGGVFPVALGLTADLVAPDKRQVAIGRTLAGSMAGNLLG
ATASGIIGDFIGWRGVLAILGALGLIASFAVAAGFRGAKVTHAATTDLATLKKGYGIIFRNPNTRFCYSAVFVEGCCVFG
LFPFIAAFLFDLGETSLSIAGIVIAGFAVGGLFYTATVSSFLPRLGVKGMMIVGAALVALQLAALAFGPGWKLQFACMLM
MGWGFYMIHGCLQVFASELSIGARATAMSLHSFFFFLGQTVGPIAYGFGVVHGGKQPTLLAAAVLMVALGFACAALLRQR
PPADAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=367, Percent_Identity=22.3433242506812, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41498; Mature: 41498

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHQPVAKPSDQKSADNKFPPAVNIIALAGFSAALSTRALDPVLPHVAEDFAISIATAAGI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGYALIYALIQPAIGAAADLFGKARLMTLCLALLGVASVLGALATSFPLLFATRILAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGGVFPVALGLTADLVAPDKRQVAIGRTLAGSMAGNLLGATASGIIGDFIGWRGVLAIL
HCCCHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GALGLIASFAVAAGFRGAKVTHAATTDLATLKKGYGIIFRNPNTRFCYSAVFVEGCCVFG
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH
LFPFIAAFLFDLGETSLSIAGIVIAGFAVGGLFYTATVSSFLPRLGVKGMMIVGAALVAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QLAALAFGPGWKLQFACMLMMGWGFYMIHGCLQVFASELSIGARATAMSLHSFFFFLGQT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VGPIAYGFGVVHGGKQPTLLAAAVLMVALGFACAALLRQRPPADAA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHQPVAKPSDQKSADNKFPPAVNIIALAGFSAALSTRALDPVLPHVAEDFAISIATAAGI
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAGYALIYALIQPAIGAAADLFGKARLMTLCLALLGVASVLGALATSFPLLFATRILAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGGVFPVALGLTADLVAPDKRQVAIGRTLAGSMAGNLLGATASGIIGDFIGWRGVLAIL
HCCCHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GALGLIASFAVAAGFRGAKVTHAATTDLATLKKGYGIIFRNPNTRFCYSAVFVEGCCVFG
HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH
LFPFIAAFLFDLGETSLSIAGIVIAGFAVGGLFYTATVSSFLPRLGVKGMMIVGAALVAL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QLAALAFGPGWKLQFACMLMMGWGFYMIHGCLQVFASELSIGARATAMSLHSFFFFLGQT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
VGPIAYGFGVVHGGKQPTLLAAAVLMVALGFACAALLRQRPPADAA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]