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The map label for this gene is ygeR [H]

Identifier: 146340968

GI number: 146340968

Start: 4227697

End: 4229148

Strand: Reverse

Name: ygeR [H]

Synonym: BRADO4039

Alternate gene names: 146340968

Gene position: 4229148-4227697 (Counterclockwise)

Preceding gene: 146340969

Following gene: 146340966

Centisome position: 56.72

GC content: 70.52

Gene sequence:

>1452_bases
ATGCCCGTGACCGACGAGTTGCTTCGCTCGCGCCGCCTGCCGCAAGTCGCGGCGCTGGCGCTGATGTCGTTCGGCGTCGC
CGGCTGCAGCGCCGACATGTCGACGCGGCTGTCCCAGACGCAAAATCCGTTCTCCAACCCGTTCGCCTCCGACTCCACCG
GTTCGGTGCAGGCCCAGCCGCCGCGGCAACAGCAATACAGCCAGCCCTATACCCCGGCACCCGCGCCGGCTCCGGCGTAT
TCGTCATCCGCGCTGCCTCCGCCCGCGGTCGGGGCGCCGCAATCCTATCCCTCCGGCGGGGGCGCCGGCGTCTCCGGCGG
CGGTCGTGGCGTCGCTTCATACGCGCCGCCCGCAGCCATCCCAGCGCCGCAGGCCTATGCGCCGCCGGCCACGCACGCCT
ACGCGCCGCCCGCGCAACCGCAGCTCGAGACCACCGGCGCGGTGCCGCCGCGCTCGATCGCCGCGGCGCGGCCCTCCGGC
GGCACAAAGATCATCGTCGGCACCAGCGATACGCTTGATGTGCTGGCCAAGCGCTACCGGGTCACGCCGGCGGAAATCCT
GGCGGCCAATGGCTACAAGGGGCCGCGTGCGCTGTCGCCGGGCCAGCAGCTGATCATTCCGCATCCGGGCGCTGTCGCGG
CCGCGCCGGCCGTCCAGCCGGTCGCGGCGCCGGTGGCTGCAGCTCCCATGGTTGCGCCCAAGCCGGTTGCGATGGCCGCT
CCCGCCGCTCCCGCGACCTTCCACTTCGTCAACCGCGGCGACACGCTGGCGGGCATCGCACGTCAGAATCACGTCTCGAC
GGCTGAGCTCGCACGCGCCAACAATCTCGACCAAACGTCTCCGTTGAAGCTCGGTGCCAGGCTGACCGTCCCTGGCAAGG
TCGCGGCGGTGGCCGCGCCCGTGGCCCCGGTCGCAGCCGTTCCCCAGGCGGTTGCGACCGTGCCCGCGCCGGCGCCGACG
ACGCGGGTCGCGACAGCCGCCGGTCCGGTGCAGAGCGCGCGTCTCGCCCAGGCCAATCCGGCACCCGAGAAGGAGGAGGA
GCCGGCGCGTCCGGCCGAGACCACCAGCTCGCTGCCGACCTTCCGCTGGCCGGCGCGCGGCAAGGTGATCACGAGCTACG
GCGCCAAGACCAACGGCAAAGCCAATGACGGCATCAACATCGCGGTGCCTGAGGGCACGCCGGTGAAGGCCGCCGAGGAC
GGCGTGGTCGCTTACGCCGGCAATGAATTGAAGGGCTATGGCAATCTGGTCCTGGTGCGGCATTCCAACGGCTATGTCAC
CGCCTATGCCCATGCGAGTGAGCTGATGGTAAAGCGCGGTGATCCGATCAAGCGTGGCCAGGTCATTGCCAAGTCCGGTC
AATCCGGAGAAGTCGGATCGCCACAGCTCCACTTCGAGATCCGCAAGGGATCGTCCCCGGTCGACCCGCTGCAATTCCTC
AACGGGGCGTGA

Upstream 100 bases:

>100_bases
GATCAGCAAGTCTCCCAACGCTTTATTCGGGGCTTAAGCGCTTATTTACCGCGGCTGTGTTTACTCGAATTCGTTGTTTG
TTGCGTACGAGTGAGTAACC

Downstream 100 bases:

>100_bases
GTTGAGCAATCATCGACACTGACGAGCTGTCGCTCCATGAAAGCCGTCATCGCCCGCGCAGGCGGGCGATCCAGTAGACA
CCAGCGTCTCGAATGTCACG

Product: M23/M37 familypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 482

Protein sequence:

>483_residues
MPVTDELLRSRRLPQVAALALMSFGVAGCSADMSTRLSQTQNPFSNPFASDSTGSVQAQPPRQQQYSQPYTPAPAPAPAY
SSSALPPPAVGAPQSYPSGGGAGVSGGGRGVASYAPPAAIPAPQAYAPPATHAYAPPAQPQLETTGAVPPRSIAAARPSG
GTKIIVGTSDTLDVLAKRYRVTPAEILAANGYKGPRALSPGQQLIIPHPGAVAAAPAVQPVAAPVAAAPMVAPKPVAMAA
PAAPATFHFVNRGDTLAGIARQNHVSTAELARANNLDQTSPLKLGARLTVPGKVAAVAAPVAPVAAVPQAVATVPAPAPT
TRVATAAGPVQSARLAQANPAPEKEEEPARPAETTSSLPTFRWPARGKVITSYGAKTNGKANDGINIAVPEGTPVKAAED
GVVAYAGNELKGYGNLVLVRHSNGYVTAYAHASELMVKRGDPIKRGQVIAKSGQSGEVGSPQLHFEIRKGSSPVDPLQFL
NGA

Sequences:

>Translated_483_residues
MPVTDELLRSRRLPQVAALALMSFGVAGCSADMSTRLSQTQNPFSNPFASDSTGSVQAQPPRQQQYSQPYTPAPAPAPAY
SSSALPPPAVGAPQSYPSGGGAGVSGGGRGVASYAPPAAIPAPQAYAPPATHAYAPPAQPQLETTGAVPPRSIAAARPSG
GTKIIVGTSDTLDVLAKRYRVTPAEILAANGYKGPRALSPGQQLIIPHPGAVAAAPAVQPVAAPVAAAPMVAPKPVAMAA
PAAPATFHFVNRGDTLAGIARQNHVSTAELARANNLDQTSPLKLGARLTVPGKVAAVAAPVAPVAAVPQAVATVPAPAPT
TRVATAAGPVQSARLAQANPAPEKEEEPARPAETTSSLPTFRWPARGKVITSYGAKTNGKANDGINIAVPEGTPVKAAED
GVVAYAGNELKGYGNLVLVRHSNGYVTAYAHASELMVKRGDPIKRGQVIAKSGQSGEVGSPQLHFEIRKGSSPVDPLQFL
NGA
>Mature_482_residues
PVTDELLRSRRLPQVAALALMSFGVAGCSADMSTRLSQTQNPFSNPFASDSTGSVQAQPPRQQQYSQPYTPAPAPAPAYS
SSALPPPAVGAPQSYPSGGGAGVSGGGRGVASYAPPAAIPAPQAYAPPATHAYAPPAQPQLETTGAVPPRSIAAARPSGG
TKIIVGTSDTLDVLAKRYRVTPAEILAANGYKGPRALSPGQQLIIPHPGAVAAAPAVQPVAAPVAAAPMVAPKPVAMAAP
AAPATFHFVNRGDTLAGIARQNHVSTAELARANNLDQTSPLKLGARLTVPGKVAAVAAPVAPVAAVPQAVATVPAPAPTT
RVATAAGPVQSARLAQANPAPEKEEEPARPAETTSSLPTFRWPARGKVITSYGAKTNGKANDGINIAVPEGTPVKAAEDG
VVAYAGNELKGYGNLVLVRHSNGYVTAYAHASELMVKRGDPIKRGQVIAKSGQSGEVGSPQLHFEIRKGSSPVDPLQFLN
GA

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=235, Percent_Identity=34.0425531914894, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1789099, Length=260, Percent_Identity=33.4615384615385, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87082297, Length=115, Percent_Identity=40, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081989, Length=94, Percent_Identity=39.3617021276596, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 48928; Mature: 48797

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVTDELLRSRRLPQVAALALMSFGVAGCSADMSTRLSQTQNPFSNPFASDSTGSVQAQP
CCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCC
PRQQQYSQPYTPAPAPAPAYSSSALPPPAVGAPQSYPSGGGAGVSGGGRGVASYAPPAAI
CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAPQAYAPPATHAYAPPAQPQLETTGAVPPRSIAAARPSGGTKIIVGTSDTLDVLAKRYR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHC
VTPAEILAANGYKGPRALSPGQQLIIPHPGAVAAAPAVQPVAAPVAAAPMVAPKPVAMAA
CCHHHHEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEC
PAAPATFHFVNRGDTLAGIARQNHVSTAELARANNLDQTSPLKLGARLTVPGKVAAVAAP
CCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHCC
VAPVAAVPQAVATVPAPAPTTRVATAAGPVQSARLAQANPAPEKEEEPARPAETTSSLPT
CHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCHHHCCCCC
FRWPARGKVITSYGAKTNGKANDGINIAVPEGTPVKAAEDGVVAYAGNELKGYGNLVLVR
EECCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEE
HSNGYVTAYAHASELMVKRGDPIKRGQVIAKSGQSGEVGSPQLHFEIRKGSSPVDPLQFL
ECCCEEEEEECHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHH
NGA
CCC
>Mature Secondary Structure 
PVTDELLRSRRLPQVAALALMSFGVAGCSADMSTRLSQTQNPFSNPFASDSTGSVQAQP
CCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEECCC
PRQQQYSQPYTPAPAPAPAYSSSALPPPAVGAPQSYPSGGGAGVSGGGRGVASYAPPAAI
CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PAPQAYAPPATHAYAPPAQPQLETTGAVPPRSIAAARPSGGTKIIVGTSDTLDVLAKRYR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCHHHHHHHHHHC
VTPAEILAANGYKGPRALSPGQQLIIPHPGAVAAAPAVQPVAAPVAAAPMVAPKPVAMAA
CCHHHHEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEC
PAAPATFHFVNRGDTLAGIARQNHVSTAELARANNLDQTSPLKLGARLTVPGKVAAVAAP
CCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHCC
VAPVAAVPQAVATVPAPAPTTRVATAAGPVQSARLAQANPAPEKEEEPARPAETTSSLPT
CHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCHHHCCCCC
FRWPARGKVITSYGAKTNGKANDGINIAVPEGTPVKAAEDGVVAYAGNELKGYGNLVLVR
EECCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEE
HSNGYVTAYAHASELMVKRGDPIKRGQVIAKSGQSGEVGSPQLHFEIRKGSSPVDPLQFL
ECCCEEEEEECHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHH
NGA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]