| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yghA [H]
Identifier: 146340878
GI number: 146340878
Start: 4119356
End: 4120369
Strand: Direct
Name: yghA [H]
Synonym: BRADO3944
Alternate gene names: 146340878
Gene position: 4119356-4120369 (Clockwise)
Preceding gene: 146340875
Following gene: 146340880
Centisome position: 55.24
GC content: 65.38
Gene sequence:
>1014_bases ATGGCCGACGACCACAACGCTTCGATCTCCCGCCGCCGAATGGTCGGAGGCACGGCGACACTCGCAGCGGCATCCCTCAC CTCGGTTGCAGCGAAAGGACGTGACGCCATGGCCGCAGCTTCCACGACGCCGGAACAGCTGGTCGACCCCACTCAGAAAT ATCCGAAACCGCCGTTCGAGCAGCAATCGCAACCCTGGCCGGGCCTGGCCGGCAAGATGTCGCCCCGGCCCGATCATGGC GAGACCAGCTACAAGGGCTCCGGACGCCTCGCGGGGCGAAAGGCGCTGATCACCGGCGGCGATTCCGGCATGGGTCGCGC CGCCGCGATCGCCTACGCCCGCGAGGGCGCCGACGTCGCGATCAACTATTATCCGACCGAAGAGCCTGACGCGCAGGAGG TGATCGCGCTGATCAAGGACGAAGGACGCAGGGGGATCGCCATTCCCGGCGACCTGCGCGACGAGCGCTTCTGCCAGCAG CTGGTACAGCAGGCGCTCGAGGCGCTCGGAGGCCTCGACATCATCGTCAATAATGCAGGACGCCAGCAGGCTCGCCAGTC GATCCTCGACGTGTCGTCCGAGGATTTCGATGCGACGATGAAGACAAACATCTACGCGCCGTTCTGGATCATCAAGGCTG CCCTGCCCCATCTCAAGCCCGGCTCGGCCATCATCGGCACCTCGTCCGAGCAGGCCTATGACCCGTCACCCGATCTCTAC GACTACGCGCAGACGAAAGCCGCGACGATGAACTATGTCAAGTCGCTGGCCAAGCAGCTCGGTCCGAAGGGCATCCGCGT CAACGCTGTCGCGCCCGGTCCGATCTGGACGCCGCTGCAGGTGTCGGGCGGAGCCACGATGGAGAAGCTGCAGAAATTCG GCGGTCAGACGCCGCTCGGTCGTCCCGGACAGCCGGCTGAGCTTGCGTCGATCTATGTCCAGTTGGCCGCAGCGGATGCA AGCTATGCCAATGGCCAGGTCTACGGCGCGGCAGGAGGGTCCGGGCAGCCATGA
Upstream 100 bases:
>100_bases ACTTGGCGCCGAGGAGGTCGAGAAAGTCCGAATTCGCGTAATGCTGACGAAACGTTCACAGCGGTGGCTGGTTGGTTGCG ACCCTCACAGGAGATACCGC
Downstream 100 bases:
>100_bases CCGGTCGCGCGAACTAGATGTGCGTCACGGGTTGCGGCAAAGCGTAAGCCTCGGTGTGAACCTGGCGGATGGTGGTGAAA GCCGCCGCCGCCGAGGCAAC
Product: oxidoreductase NAD(P)-binding subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MADDHNASISRRRMVGGTATLAAASLTSVAAKGRDAMAAASTTPEQLVDPTQKYPKPPFEQQSQPWPGLAGKMSPRPDHG ETSYKGSGRLAGRKALITGGDSGMGRAAAIAYAREGADVAINYYPTEEPDAQEVIALIKDEGRRGIAIPGDLRDERFCQQ LVQQALEALGGLDIIVNNAGRQQARQSILDVSSEDFDATMKTNIYAPFWIIKAALPHLKPGSAIIGTSSEQAYDPSPDLY DYAQTKAATMNYVKSLAKQLGPKGIRVNAVAPGPIWTPLQVSGGATMEKLQKFGGQTPLGRPGQPAELASIYVQLAAADA SYANGQVYGAAGGSGQP
Sequences:
>Translated_337_residues MADDHNASISRRRMVGGTATLAAASLTSVAAKGRDAMAAASTTPEQLVDPTQKYPKPPFEQQSQPWPGLAGKMSPRPDHG ETSYKGSGRLAGRKALITGGDSGMGRAAAIAYAREGADVAINYYPTEEPDAQEVIALIKDEGRRGIAIPGDLRDERFCQQ LVQQALEALGGLDIIVNNAGRQQARQSILDVSSEDFDATMKTNIYAPFWIIKAALPHLKPGSAIIGTSSEQAYDPSPDLY DYAQTKAATMNYVKSLAKQLGPKGIRVNAVAPGPIWTPLQVSGGATMEKLQKFGGQTPLGRPGQPAELASIYVQLAAADA SYANGQVYGAAGGSGQP >Mature_336_residues ADDHNASISRRRMVGGTATLAAASLTSVAAKGRDAMAAASTTPEQLVDPTQKYPKPPFEQQSQPWPGLAGKMSPRPDHGE TSYKGSGRLAGRKALITGGDSGMGRAAAIAYAREGADVAINYYPTEEPDAQEVIALIKDEGRRGIAIPGDLRDERFCQQL VQQALEALGGLDIIVNNAGRQQARQSILDVSSEDFDATMKTNIYAPFWIIKAALPHLKPGSAIIGTSSEQAYDPSPDLYD YAQTKAATMNYVKSLAKQLGPKGIRVNAVAPGPIWTPLQVSGGATMEKLQKFGGQTPLGRPGQPAELASIYVQLAAADAS YANGQVYGAAGGSGQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=32.1428571428571, Blast_Score=121, Evalue=9e-28, Organism=Homo sapiens, GI5031737, Length=274, Percent_Identity=33.2116788321168, Blast_Score=118, Evalue=6e-27, Organism=Homo sapiens, GI33667109, Length=217, Percent_Identity=34.5622119815668, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI59889578, Length=194, Percent_Identity=31.9587628865979, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=28.4584980237154, Blast_Score=89, Evalue=8e-18, Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=29.6875, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=28.8461538461538, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=30.3191489361702, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=30.0518134715026, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI66933014, Length=247, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=28.75, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI4758504, Length=251, Percent_Identity=29.4820717131474, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=34.8623853211009, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI7705925, Length=253, Percent_Identity=26.8774703557312, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI10190704, Length=268, Percent_Identity=27.6119402985075, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254986, Length=201, Percent_Identity=29.8507462686567, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI20149619, Length=205, Percent_Identity=28.780487804878, Blast_Score=66, Evalue=6e-11, Organism=Escherichia coli, GI1789378, Length=288, Percent_Identity=57.2916666666667, Blast_Score=336, Evalue=2e-93, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=33.4677419354839, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=33.0769230769231, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=32.1285140562249, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=32.4, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=30.1204819277108, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=29.7959183673469, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=29.3172690763052, Blast_Score=90, Evalue=3e-19, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=29.6747967479675, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=26.9076305220884, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=29.3436293436293, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=28.9156626506024, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=33.8645418326693, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=34.0996168582375, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17531453, Length=273, Percent_Identity=34.4322344322344, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=29.718875502008, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71994600, Length=254, Percent_Identity=30.3149606299213, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=33.206106870229, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=31.5789473684211, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=31.5589353612167, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=33.8403041825095, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=31.9548872180451, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=31.4176245210728, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=33.4600760456274, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=29.9595141700405, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=31.5789473684211, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=31.0861423220974, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=32.6996197718631, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=33.4600760456274, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=29.4820717131474, Blast_Score=89, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17508651, Length=252, Percent_Identity=28.1746031746032, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17536025, Length=268, Percent_Identity=30.2238805970149, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71982365, Length=243, Percent_Identity=29.6296296296296, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=29.3893129770992, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17538486, Length=273, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=28.968253968254, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=27.5590551181102, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=25.4032258064516, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=26.953125, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=26.1083743842365, Blast_Score=64, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=260, Percent_Identity=26.9230769230769, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=31.3253012048193, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI24644339, Length=242, Percent_Identity=33.4710743801653, Blast_Score=113, Evalue=2e-25, Organism=Drosophila melanogaster, GI21357041, Length=238, Percent_Identity=32.7731092436975, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI28571526, Length=235, Percent_Identity=33.1914893617021, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=29.5546558704453, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=32.4110671936759, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=29.7959183673469, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=32.8, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI17737361, Length=248, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI21357673, Length=202, Percent_Identity=28.7128712871287, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21358495, Length=206, Percent_Identity=30.0970873786408, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI24640492, Length=194, Percent_Identity=25.7731958762887, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI18859837, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 35440; Mature: 35309
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADDHNASISRRRMVGGTATLAAASLTSVAAKGRDAMAAASTTPEQLVDPTQKYPKPPFE CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHCCCHHHCCCCCCC QQSQPWPGLAGKMSPRPDHGETSYKGSGRLAGRKALITGGDSGMGRAAAIAYAREGADVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEE INYYPTEEPDAQEVIALIKDEGRRGIAIPGDLRDERFCQQLVQQALEALGGLDIIVNNAG EEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCC RQQARQSILDVSSEDFDATMKTNIYAPFWIIKAALPHLKPGSAIIGTSSEQAYDPSPDLY HHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHH DYAQTKAATMNYVKSLAKQLGPKGIRVNAVAPGPIWTPLQVSGGATMEKLQKFGGQTPLG HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHCCCCCCC RPGQPAELASIYVQLAAADASYANGQVYGAAGGSGQP CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC >Mature Secondary Structure ADDHNASISRRRMVGGTATLAAASLTSVAAKGRDAMAAASTTPEQLVDPTQKYPKPPFE CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHCCCHHHCCCCCCC QQSQPWPGLAGKMSPRPDHGETSYKGSGRLAGRKALITGGDSGMGRAAAIAYAREGADVA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEE INYYPTEEPDAQEVIALIKDEGRRGIAIPGDLRDERFCQQLVQQALEALGGLDIIVNNAG EEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCC RQQARQSILDVSSEDFDATMKTNIYAPFWIIKAALPHLKPGSAIIGTSSEQAYDPSPDLY HHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHH DYAQTKAATMNYVKSLAKQLGPKGIRVNAVAPGPIWTPLQVSGGATMEKLQKFGGQTPLG HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHCCCCCCC RPGQPAELASIYVQLAAADASYANGQVYGAAGGSGQP CCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]