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The map label for this gene is rraA [C]

Identifier: 146340800

GI number: 146340800

Start: 4033283

End: 4033963

Strand: Reverse

Name: rraA [C]

Synonym: BRADO3859

Alternate gene names: 146340800

Gene position: 4033963-4033283 (Counterclockwise)

Preceding gene: 146340805

Following gene: 146340799

Centisome position: 54.1

GC content: 65.35

Gene sequence:

>681_bases
ATGACCGCCGGTTTTCGAATTTATCCGAATCCGAAACAGAGAGTGTCGAAGGACCTGGTGGAGCGGTACCGGACGCTCCC
GGTCGCCAATGTCAGCGACAGCATGTCGCGAATGACCGCAGCCGGCCCGAGGCTCCGGCCGATGCATGGCGGCGGCGTGC
TCGCAGGACCTGCGATCACCGTGAAATCGCGCCCCGGCGACAATCTGATGCTGCACAAGGCGCTCGACATGGCCGAGCCG
GGTGACATCGTCGTCGTCGATGCCGGCGGCGATCTCTCCAATGCGCTGATCGGCGAGATGATGATCGCGCATGCCGAGCG
GCGCGGCCTCGGTGGTGTGGTCATCAACGGCTCGGTGCGTGATGCCGCAGCGATCCGGGCCGGCACGTTTCCGATCTTCG
CCGCCGGGGTGACCCATCGCGGTCCCTACAAGGATGGTCCCGGCGAGATCAATGTCGCGATCGCGATCGACGGCATGGTC
ATCCATCCGGGCGACCTGATCCTCGGCGATGATGACGGCCTCGTCTGCGTCCCCTTCGCGGACGCTGAGTCGGTCTTCGC
CGCCGCGACGAAGAAGCACGAGGTCGAGACCGCGCAGCTCGCAGCCATCGCCGCCGGCCGCAACGACCGTTCATGGGTCG
ATGACGAACTGAAGAAGCGCGGCGTCGAATACATGGGCTGA

Upstream 100 bases:

>100_bases
TGAAACGGCGTTGCATTTTTTGTACGTATCGCCCTGACGGCTCATCTTGTCAACCGCCGATCGGCAGAGCCGCAGGGACG
ATCGCAACGAGGAGCATGTC

Downstream 100 bases:

>100_bases
GCCCCGGTTCGCGCCGCGTGAACTTCCTGTCGCGTATGTGTATACCCTCTCGAAACGGCCGCCCGATGGCGGTCGGCTTC
GGGAATCAGGACGTGGCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTAGFRIYPNPKQRVSKDLVERYRTLPVANVSDSMSRMTAAGPRLRPMHGGGVLAGPAITVKSRPGDNLMLHKALDMAEP
GDIVVVDAGGDLSNALIGEMMIAHAERRGLGGVVINGSVRDAAAIRAGTFPIFAAGVTHRGPYKDGPGEINVAIAIDGMV
IHPGDLILGDDDGLVCVPFADAESVFAAATKKHEVETAQLAAIAAGRNDRSWVDDELKKRGVEYMG

Sequences:

>Translated_226_residues
MTAGFRIYPNPKQRVSKDLVERYRTLPVANVSDSMSRMTAAGPRLRPMHGGGVLAGPAITVKSRPGDNLMLHKALDMAEP
GDIVVVDAGGDLSNALIGEMMIAHAERRGLGGVVINGSVRDAAAIRAGTFPIFAAGVTHRGPYKDGPGEINVAIAIDGMV
IHPGDLILGDDDGLVCVPFADAESVFAAATKKHEVETAQLAAIAAGRNDRSWVDDELKKRGVEYMG
>Mature_225_residues
TAGFRIYPNPKQRVSKDLVERYRTLPVANVSDSMSRMTAAGPRLRPMHGGGVLAGPAITVKSRPGDNLMLHKALDMAEPG
DIVVVDAGGDLSNALIGEMMIAHAERRGLGGVVINGSVRDAAAIRAGTFPIFAAGVTHRGPYKDGPGEINVAIAIDGMVI
HPGDLILGDDDGLVCVPFADAESVFAAATKKHEVETAQLAAIAAGRNDRSWVDDELKKRGVEYMG

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 23793; Mature: 23661

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGFRIYPNPKQRVSKDLVERYRTLPVANVSDSMSRMTAAGPRLRPMHGGGVLAGPAIT
CCCCCEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEECCCCEEECCEEE
VKSRPGDNLMLHKALDMAEPGDIVVVDAGGDLSNALIGEMMIAHAERRGLGGVVINGSVR
EECCCCCCEEEEEHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC
DAAAIRAGTFPIFAAGVTHRGPYKDGPGEINVAIAIDGMVIHPGDLILGDDDGLVCVPFA
CHHHEECCCCEEEEECCCCCCCCCCCCCCEEEEEEECCEEECCCCEEEECCCCEEEEECC
DAESVFAAATKKHEVETAQLAAIAAGRNDRSWVDDELKKRGVEYMG
CCHHHHHHHHCCCCCHHHHEEEEECCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
TAGFRIYPNPKQRVSKDLVERYRTLPVANVSDSMSRMTAAGPRLRPMHGGGVLAGPAIT
CCCCEECCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEECCCCEEECCEEE
VKSRPGDNLMLHKALDMAEPGDIVVVDAGGDLSNALIGEMMIAHAERRGLGGVVINGSVR
EECCCCCCEEEEEHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCC
DAAAIRAGTFPIFAAGVTHRGPYKDGPGEINVAIAIDGMVIHPGDLILGDDDGLVCVPFA
CHHHEECCCCEEEEECCCCCCCCCCCCCCEEEEEEECCEEECCCCEEEECCCCEEEEECC
DAESVFAAATKKHEVETAQLAAIAAGRNDRSWVDDELKKRGVEYMG
CCHHHHHHHHCCCCCHHHHEEEEECCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]