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The map label for this gene is cspA [C]

Identifier: 146340323

GI number: 146340323

Start: 3543304

End: 3543513

Strand: Reverse

Name: cspA [C]

Synonym: BRADO3346

Alternate gene names: 146340323

Gene position: 3543513-3543304 (Counterclockwise)

Preceding gene: 146340324

Following gene: 146340320

Centisome position: 47.52

GC content: 57.14

Gene sequence:

>210_bases
ATGCCGACCTACAAAGGCAGCGTGAAATGGTTCAACCCGACCAAGGGCTATGGCTTCATCAAACCGACCGGCGGAGACAA
GGACGTCTTCGTCCATATCTCGGCCGTCGAGCGTGCCGGACTGACCACGCTCAACGAGAACCAGGCGATCGAATATGATC
TGGTCGAGAGCCGCGGCAAGACCTCGGCTGAGAATCTCAAGCTCTCTTGA

Upstream 100 bases:

>100_bases
GTAGCTACGGAAATTGAGCAGATCCCGGGAAGCCCGTTTGTGGCGTGGCACGCGATGAGCGTGGCCGCGTCTTTTTTTTC
GTCTAGACGAGGAGACAGCG

Downstream 100 bases:

>100_bases
GGCGCCGACGGCCGCCGCGCGATCGCGCGCAAGCCGGTCTCGACTAACGAAATCCGCGCAATACGAATTCCGCGCGGATG
ATCCGACTTCGCCAGCCTTT

Product: DNA binding cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MPTYKGSVKWFNPTKGYGFIKPTGGDKDVFVHISAVERAGLTTLNENQAIEYDLVESRGKTSAENLKLS

Sequences:

>Translated_69_residues
MPTYKGSVKWFNPTKGYGFIKPTGGDKDVFVHISAVERAGLTTLNENQAIEYDLVESRGKTSAENLKLS
>Mature_68_residues
PTYKGSVKWFNPTKGYGFIKPTGGDKDVFVHISAVERAGLTTLNENQAIEYDLVESRGKTSAENLKLS

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=48.4848484848485, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=46.969696969697, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=47.5409836065574, Blast_Score=67, Evalue=3e-13,
Organism=Escherichia coli, GI1787834, Length=49, Percent_Identity=57.1428571428571, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1787107, Length=50, Percent_Identity=48, Blast_Score=61, Evalue=1e-11,
Organism=Escherichia coli, GI1789979, Length=58, Percent_Identity=50, Blast_Score=60, Evalue=2e-11,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=42.1875, Blast_Score=59, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7607; Mature: 7475

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTYKGSVKWFNPTKGYGFIKPTGGDKDVFVHISAVERAGLTTLNENQAIEYDLVESRGK
CCCCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCCEEECCCCCEEEEECCCCCC
TSAENLKLS
CCCCCEECC
>Mature Secondary Structure 
PTYKGSVKWFNPTKGYGFIKPTGGDKDVFVHISAVERAGLTTLNENQAIEYDLVESRGK
CCCCCCEEEECCCCCCEEEECCCCCCEEEEEEECCCCCCCEEECCCCCEEEEECCCCCC
TSAENLKLS
CCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]