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The map label for this gene is ccdA [H]

Identifier: 146340160

GI number: 146340160

Start: 3380483

End: 3381217

Strand: Direct

Name: ccdA [H]

Synonym: BRADO3175

Alternate gene names: 146340160

Gene position: 3380483-3381217 (Clockwise)

Preceding gene: 146340156

Following gene: 146340162

Centisome position: 45.34

GC content: 66.67

Gene sequence:

>735_bases
ATGGATCTCGACGTCACGCTCGGCGCCGCGCTCGCCGCCGGCCTCCTGTCGTTCCTGTCGCCCTGCATCCTGCCGCTGGT
TCCGCCGTTCCTGTGCTACATGGCCGGCGTCTCGGCGGCCGATACCATCGCCGAGGGCGGCGTGGTGCAGCGGCGCCGGA
CGGTGCTGACGGCGCTGTGCTTCGTCGCCGGCTTCTCGCTGGTGTTCATAGGCCTCGGTGCGACAGCCTCCGTCTTTGGC
CGCTTCATCGCCGGTCATCTCGGCCAGCTCGGCATGGTCGCGGGACTCGTCATCATCGCGATGGGGCTGCATTTCCTCGG
GTTGCTCAGGATACCCTTGCTGTACCGCAGCGCGACGATCGATGTCGGCCGCAAGCCGGCCGGCCTGCTTGGCGCTTTCG
TCATGGGGCTGGCCTTCGCCTTAGGCTGGACGCCATGCGCGGGACCGGTGCTCGCCGCCGTGCTGATGATGGCCGGCGCG
GAGGCGACCGTGGGGAAGGGCGCGCTGCTGCTCGCGGCCTATTCGGTCGGAACAGGCATCCCGTTCCTGATCGCGGCGGC
CTTCACGGGGCAGTTCATGACGGTACTGAAGGGTATCAAGCCGCATCTGCCTCTGGTCGAAAAGACGATGGGCGGCTTTC
TCGTCCTTACCGGCGTGGCCTTTCTTGCCGGTGTCATTCCGGAGATGTCGCAATGGATATTCGAGCGCTTCCCATCGCTC
GCCACCATCGGCTGA

Upstream 100 bases:

>100_bases
GCCAGCCAATCTATCATTAAATTCGAATATGTACTAGTGCGCGAATTCCGAAGCCTGCGCTGCCGGCCGGGAGTCGCAGC
ACTGCTGCGCGGGAGGACAA

Downstream 100 bases:

>100_bases
TCAGCCAAAGCGGAAATCGAGCAGGTTGACGAAGGATTCCAGCTCGATCTCGTAGCGATGCACGAGGCCGGCATCGCCCT
CGCGCGCGGCGCGGCCGATC

Product: putative transmembrane cytochrome C biogenesis protein SoxV protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MDLDVTLGAALAAGLLSFLSPCILPLVPPFLCYMAGVSAADTIAEGGVVQRRRTVLTALCFVAGFSLVFIGLGATASVFG
RFIAGHLGQLGMVAGLVIIAMGLHFLGLLRIPLLYRSATIDVGRKPAGLLGAFVMGLAFALGWTPCAGPVLAAVLMMAGA
EATVGKGALLLAAYSVGTGIPFLIAAAFTGQFMTVLKGIKPHLPLVEKTMGGFLVLTGVAFLAGVIPEMSQWIFERFPSL
ATIG

Sequences:

>Translated_244_residues
MDLDVTLGAALAAGLLSFLSPCILPLVPPFLCYMAGVSAADTIAEGGVVQRRRTVLTALCFVAGFSLVFIGLGATASVFG
RFIAGHLGQLGMVAGLVIIAMGLHFLGLLRIPLLYRSATIDVGRKPAGLLGAFVMGLAFALGWTPCAGPVLAAVLMMAGA
EATVGKGALLLAAYSVGTGIPFLIAAAFTGQFMTVLKGIKPHLPLVEKTMGGFLVLTGVAFLAGVIPEMSQWIFERFPSL
ATIG
>Mature_244_residues
MDLDVTLGAALAAGLLSFLSPCILPLVPPFLCYMAGVSAADTIAEGGVVQRRRTVLTALCFVAGFSLVFIGLGATASVFG
RFIAGHLGQLGMVAGLVIIAMGLHFLGLLRIPLLYRSATIDVGRKPAGLLGAFVMGLAFALGWTPCAGPVLAAVLMMAGA
EATVGKGALLLAAYSVGTGIPFLIAAAFTGQFMTVLKGIKPHLPLVEKTMGGFLVLTGVAFLAGVIPEMSQWIFERFPSL
ATIG

Specific function: Cytochrome c oxidase activity is partially restored by mutations in bdbC or bdbD that are defective in the synthesis of disulfide bond containing proteins. The same mutations abrogate the need for CcdA in sporulation [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: NA

Molecular weight: Translated: 25038; Mature: 25038

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDVTLGAALAAGLLSFLSPCILPLVPPFLCYMAGVSAADTIAEGGVVQRRRTVLTALC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHH
FVAGFSLVFIGLGATASVFGRFIAGHLGQLGMVAGLVIIAMGLHFLGLLRIPLLYRSATI
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVGRKPAGLLGAFVMGLAFALGWTPCAGPVLAAVLMMAGAEATVGKGALLLAAYSVGTGI
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCH
PFLIAAAFTGQFMTVLKGIKPHLPLVEKTMGGFLVLTGVAFLAGVIPEMSQWIFERFPSL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ATIG
HCCC
>Mature Secondary Structure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HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969507; 9068642; 9384377; 10781554; 11844773 [H]