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The map label for this gene is 146339671

Identifier: 146339671

GI number: 146339671

Start: 2868442

End: 2868954

Strand: Direct

Name: 146339671

Synonym: BRADO2666

Alternate gene names: NA

Gene position: 2868442-2868954 (Clockwise)

Preceding gene: 146339666

Following gene: 146339672

Centisome position: 38.47

GC content: 68.42

Gene sequence:

>513_bases
ATGCGCCAGGCCGTCGCCGGAGATGACCAGGCCTACCATCGTCTGCTGAAGGCGATCACGCCGGTGCTGCGCGCAGCATC
GCGGCGAGGGCTCACGCGCGCCGGACAGCCGCCGGATCAGGCCGAGGACATCGTGCAGGAAATTCTGTTGGCGATTCATC
TCAAGCGGCACACCTGGGACGTCAACGCGCCGTTCGCGCCCTGGCTGTTTGCGATCGCCCGCAACAAGCTGATCGACATG
CTGCGCCGACGCGGCCGGCGGGTGTTCGTCGACATCGACGATTTCGCCGAGACGCTGGCCGACGAGCCGCCGGCGCCGAG
CGTCTCCGCCGGCGAGGTCGAGACTCAGCTGAAGACGCTGCCGCAGCGCCAGCGCGATGTGCTGCAGGCGATCGCGGTCG
AGGCCTCCTCGATCAAGCAGACGGCGCAGAAGTTTTCGATGAGCGAGGGCGCGGTGCGGGTCGCGCTGCACCGGGCGCTC
GCGAGCCTCACGGCCAAGCTACGGGATACGTGA

Upstream 100 bases:

>100_bases
TTGTGATTAGGTCTGTGGCGGGGTAACAATCAGACGATCCGGTCGAACCTGTGGGGGTGGAGCGTAGGTGCGCGAGCGTG
ACGACGAGTGGACGGGCTGG

Downstream 100 bases:

>100_bases
CCATGGACACCGATCAGCTCATCCGCTCGCTTGCTGCTGACAATGCGCAACGCGCCCAGCCTGTCGGCATCGTCCTGGCG
CTGGCCTTGATGGCGGCCAC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigD; Sigma-; RNA Polymerase ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-70 Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; Sigma-70 Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MRQAVAGDDQAYHRLLKAITPVLRAASRRGLTRAGQPPDQAEDIVQEILLAIHLKRHTWDVNAPFAPWLFAIARNKLIDM
LRRRGRRVFVDIDDFAETLADEPPAPSVSAGEVETQLKTLPQRQRDVLQAIAVEASSIKQTAQKFSMSEGAVRVALHRAL
ASLTAKLRDT

Sequences:

>Translated_170_residues
MRQAVAGDDQAYHRLLKAITPVLRAASRRGLTRAGQPPDQAEDIVQEILLAIHLKRHTWDVNAPFAPWLFAIARNKLIDM
LRRRGRRVFVDIDDFAETLADEPPAPSVSAGEVETQLKTLPQRQRDVLQAIAVEASSIKQTAQKFSMSEGAVRVALHRAL
ASLTAKLRDT
>Mature_170_residues
MRQAVAGDDQAYHRLLKAITPVLRAASRRGLTRAGQPPDQAEDIVQEILLAIHLKRHTWDVNAPFAPWLFAIARNKLIDM
LRRRGRRVFVDIDDFAETLADEPPAPSVSAGEVETQLKTLPQRQRDVLQAIAVEASSIKQTAQKFSMSEGAVRVALHRAL
ASLTAKLRDT

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18908; Mature: 18908

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQAVAGDDQAYHRLLKAITPVLRAASRRGLTRAGQPPDQAEDIVQEILLAIHLKRHTWD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
VNAPFAPWLFAIARNKLIDMLRRRGRRVFVDIDDFAETLADEPPAPSVSAGEVETQLKTL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
PQRQRDVLQAIAVEASSIKQTAQKFSMSEGAVRVALHRALASLTAKLRDT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRQAVAGDDQAYHRLLKAITPVLRAASRRGLTRAGQPPDQAEDIVQEILLAIHLKRHTWD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
VNAPFAPWLFAIARNKLIDMLRRRGRRVFVDIDDFAETLADEPPAPSVSAGEVETQLKTL
CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
PQRQRDVLQAIAVEASSIKQTAQKFSMSEGAVRVALHRALASLTAKLRDT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA