| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is aceE [H]
Identifier: 146339496
GI number: 146339496
Start: 2650247
End: 2652715
Strand: Direct
Name: aceE [H]
Synonym: BRADO2485
Alternate gene names: 146339496
Gene position: 2650247-2652715 (Clockwise)
Preceding gene: 146339490
Following gene: 146339497
Centisome position: 35.54
GC content: 66.5
Gene sequence:
>2469_bases ATGCGCGAAAAATTGAGAATTATGGCCAGCTCGACGGGACTAGAGTCAACGAATCCACCGAACCGCCCCTGGGAGCAGCG CGCCATGGCCAGGCCACCCGCATCAACGCCATCCGCATCGTCAGACCGTCTCGCTATCCTGAACGCGCTGACCCGCAAGG CCCTGTGGCTGTCGTCTTGGACGATTCATCACGCCAACCACATCCGGCCGAACATCGACGGCCTCAAGGTCGGCGGCCAC CAGGCGTCCTCCGCGTCGCTCGCGACCATCATGTCGGCGCTTTACTTCTCGGTGCTGCGCCCAGAGGATCGCGTCGCGGT GAAGCCGCATGCGAGCCCGGTCTTCCATGCCATCCAATATCTGTTCGGACGGCAGACCAAGGAGAAGCTGGAGAATTTCC GCGGCTTCAAGGGCGCGCAGTCCTATCCGTCGCGCACCAAGGACGTCGACGATGTCGACTTCTCGACCGGCTCGGTCGGC CTCGGCGTCGCGCAGACGCTGTTCTCCTCGCTGGTGCAGGACTACGTCAAGACGCATGGCTGGATGAAGGATCGCCGCGA GGGTCGCATGATCGCGCTGGTCGGCGACGCCGAGATGGACGAAGGCAACATCTTCGAGGCGCTGGCCGAGGGCTGGAAGC ACGGCCTGCGCAACACCTGGTGGATCGTCGACTACAACCGCCAGAGCCTGGATGCCGTGGTGCGCGAGGGGCTGTGGGAG AAGTTCGAGACCATGTTCCGCAACTTCGGCTGGGACGTGGTGATCGTGAAATACGGCCGGCTGATGCGCGAGGCCTTTGC CGAGCCCGGCGGCGAGTCGCTCAGGCGCTGGATCGACAACTGCCCGAACGCGCTGTACGCGGCGCTGTGCTTTCAGGGCG GGGCGGCGTTCCGCAAGCACATCCAGGACGAGATCGGCGACCAGGGCGACGTGACCCGGCTCCTCGATAATCGCAGCGAC GACGAGCTGCTGGCGCTGATGAGCAATCTCGGCGGCCACGACATGGCGAGCATGCTGGAGGCGTTCGAACAGATCGACCA CGATCGCCCCGTCTGCTTCATCGCCTACACGATCAAGGGCGTCGGCCTGCCGTTCCAGGGCCACAAGGACAACCACGCCG GGCTGATGACGGTCGCGCAGATGGAGAAATGGCGCGCCGAGCAGAACATCCGTCCGGGCCATGAGTGGGACAAGTTCGAA GGCCTGACGCAGGACCCGGCGACGCTTGAAGCGTTTCTGGCCTCCGTGCCGTTCAACCGCGACGGCCGCCGGCTCGACGA CGCCGTGCTCGACGTACCGGAGCGGCTGACCTTCACCGCGGCCGCGCAGATGTCGACGCAGCAGGGCTTCGGCTTGATCC TTAACGATCTCGCCCGCAGCGACATCGCGATGGCGTCGCGGATCGTGACCTCGTCGCCCGACGTCACCGTCTCGACCAAT CTGGGCGCGTGGGTCAACCGGCGCGGCCTGTTCGCGCATGCCGAGAAGGCCGACCTGTTCCGCAGCGAGAAGATCCCCTC GACCTTCAACTGGGCGGCCTCGCCCAAGGGGCAGCACATCGAGCTCGGCATCGCCGAGATGAATCTGTTCATCATGGCCT CGGCGCTCGGCCTGTCGCACTCCATCAACGGCGCGCGGCTGCTGCCGATCGTCACGCTGTACGATCCGTTCATCGAGCGC GGCCTCGATGCGCTGAACTACGCCTGCTATCAGGACGCGCGCTTCATGGTCGTCGCGACCCCGTCGGGCGTCACGCTGGC GCCGGAGGGCGGCGCGCACCAGTCGATCGCGACGCCACTGATCGGCATGGCGCAGGACGGCTTGTCCTCGTTCGAGCCGG CCTTCGTCGACGAGCTCGCGGCGATCATGAAATGGGGCTTTGGCCACATGCAGGCCGCGCCGGGCGAGGGCGGCTCGGTC TATTTGCGGCTATCGACGCGCACCGTCGACCAGCCGCAGCGGATCATGACGCCGGAGCTGGAGGCCGACATCGCCGCCGG CGCCTATTGGCTGCGCAAGCCGGGGCCGAATGCAGAAGTGATCATTGCCTATACCGGCGCGCTCGCGCCTGAGGCGATCG AGGCGACCGGATTAATCGGCGAATCCCGCCGCGACGTCGGCCTGCTCGCCGTCACCTCGGCGGACCGGCTGCATGCCGGA TGGACGGCGGCGCGCAGCCTGCGCAGGCATCGCCGCGGCGTGCAGCATCTCAGCCATATCGAGCAATTGCTGGCGCCGCT GCCGCGCGACTGCGGAATCGTCACCGTCATCGACGGCCATCCGGCGGCGCTCGGCTGGCTAGGCTCGGTGCGCGGCCATC GCGTCGAGGCGCTGGGGGTCGAGAAGTTCGGTCAGACCGGCACGATCGACGATCTCTACCGTCATAACGGCATGGACGCG AATGCCATCATCGACGCGGCCGAGAGCCTGACCGGCGCGCCGGTGCGGCACCGCAAGATGGCGGTGTGA
Upstream 100 bases:
>100_bases TGGCCGAGGATCTTGCGGTCGATGACGTCGAGTTCGGGCATTGGGATGCTGTGCCGGGATTGATAGCTCTGACGGGAAAA TATCCCAATAATGTTCGCCC
Downstream 100 bases:
>100_bases AAGCTGAGGGGATCTCACGAGTCTGAACGTAGATACGCCGCCTCCTTCGCCTGGACAAAGGAGACGGCGCTGCAACTTGG GGACAAAGGACTGCGTGCTA
Product: putative dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 822; Mature: 822
Protein sequence:
>822_residues MREKLRIMASSTGLESTNPPNRPWEQRAMARPPASTPSASSDRLAILNALTRKALWLSSWTIHHANHIRPNIDGLKVGGH QASSASLATIMSALYFSVLRPEDRVAVKPHASPVFHAIQYLFGRQTKEKLENFRGFKGAQSYPSRTKDVDDVDFSTGSVG LGVAQTLFSSLVQDYVKTHGWMKDRREGRMIALVGDAEMDEGNIFEALAEGWKHGLRNTWWIVDYNRQSLDAVVREGLWE KFETMFRNFGWDVVIVKYGRLMREAFAEPGGESLRRWIDNCPNALYAALCFQGGAAFRKHIQDEIGDQGDVTRLLDNRSD DELLALMSNLGGHDMASMLEAFEQIDHDRPVCFIAYTIKGVGLPFQGHKDNHAGLMTVAQMEKWRAEQNIRPGHEWDKFE GLTQDPATLEAFLASVPFNRDGRRLDDAVLDVPERLTFTAAAQMSTQQGFGLILNDLARSDIAMASRIVTSSPDVTVSTN LGAWVNRRGLFAHAEKADLFRSEKIPSTFNWAASPKGQHIELGIAEMNLFIMASALGLSHSINGARLLPIVTLYDPFIER GLDALNYACYQDARFMVVATPSGVTLAPEGGAHQSIATPLIGMAQDGLSSFEPAFVDELAAIMKWGFGHMQAAPGEGGSV YLRLSTRTVDQPQRIMTPELEADIAAGAYWLRKPGPNAEVIIAYTGALAPEAIEATGLIGESRRDVGLLAVTSADRLHAG WTAARSLRRHRRGVQHLSHIEQLLAPLPRDCGIVTVIDGHPAALGWLGSVRGHRVEALGVEKFGQTGTIDDLYRHNGMDA NAIIDAAESLTGAPVRHRKMAV
Sequences:
>Translated_822_residues MREKLRIMASSTGLESTNPPNRPWEQRAMARPPASTPSASSDRLAILNALTRKALWLSSWTIHHANHIRPNIDGLKVGGH QASSASLATIMSALYFSVLRPEDRVAVKPHASPVFHAIQYLFGRQTKEKLENFRGFKGAQSYPSRTKDVDDVDFSTGSVG LGVAQTLFSSLVQDYVKTHGWMKDRREGRMIALVGDAEMDEGNIFEALAEGWKHGLRNTWWIVDYNRQSLDAVVREGLWE KFETMFRNFGWDVVIVKYGRLMREAFAEPGGESLRRWIDNCPNALYAALCFQGGAAFRKHIQDEIGDQGDVTRLLDNRSD DELLALMSNLGGHDMASMLEAFEQIDHDRPVCFIAYTIKGVGLPFQGHKDNHAGLMTVAQMEKWRAEQNIRPGHEWDKFE GLTQDPATLEAFLASVPFNRDGRRLDDAVLDVPERLTFTAAAQMSTQQGFGLILNDLARSDIAMASRIVTSSPDVTVSTN LGAWVNRRGLFAHAEKADLFRSEKIPSTFNWAASPKGQHIELGIAEMNLFIMASALGLSHSINGARLLPIVTLYDPFIER GLDALNYACYQDARFMVVATPSGVTLAPEGGAHQSIATPLIGMAQDGLSSFEPAFVDELAAIMKWGFGHMQAAPGEGGSV YLRLSTRTVDQPQRIMTPELEADIAAGAYWLRKPGPNAEVIIAYTGALAPEAIEATGLIGESRRDVGLLAVTSADRLHAG WTAARSLRRHRRGVQHLSHIEQLLAPLPRDCGIVTVIDGHPAALGWLGSVRGHRVEALGVEKFGQTGTIDDLYRHNGMDA NAIIDAAESLTGAPVRHRKMAV >Mature_822_residues MREKLRIMASSTGLESTNPPNRPWEQRAMARPPASTPSASSDRLAILNALTRKALWLSSWTIHHANHIRPNIDGLKVGGH QASSASLATIMSALYFSVLRPEDRVAVKPHASPVFHAIQYLFGRQTKEKLENFRGFKGAQSYPSRTKDVDDVDFSTGSVG LGVAQTLFSSLVQDYVKTHGWMKDRREGRMIALVGDAEMDEGNIFEALAEGWKHGLRNTWWIVDYNRQSLDAVVREGLWE KFETMFRNFGWDVVIVKYGRLMREAFAEPGGESLRRWIDNCPNALYAALCFQGGAAFRKHIQDEIGDQGDVTRLLDNRSD DELLALMSNLGGHDMASMLEAFEQIDHDRPVCFIAYTIKGVGLPFQGHKDNHAGLMTVAQMEKWRAEQNIRPGHEWDKFE GLTQDPATLEAFLASVPFNRDGRRLDDAVLDVPERLTFTAAAQMSTQQGFGLILNDLARSDIAMASRIVTSSPDVTVSTN LGAWVNRRGLFAHAEKADLFRSEKIPSTFNWAASPKGQHIELGIAEMNLFIMASALGLSHSINGARLLPIVTLYDPFIER GLDALNYACYQDARFMVVATPSGVTLAPEGGAHQSIATPLIGMAQDGLSSFEPAFVDELAAIMKWGFGHMQAAPGEGGSV YLRLSTRTVDQPQRIMTPELEADIAAGAYWLRKPGPNAEVIIAYTGALAPEAIEATGLIGESRRDVGLLAVTSADRLHAG WTAARSLRRHRRGVQHLSHIEQLLAPLPRDCGIVTVIDGHPAALGWLGSVRGHRVEALGVEKFGQTGTIDDLYRHNGMDA NAIIDAAESLTGAPVRHRKMAV
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=795, Percent_Identity=24.1509433962264, Blast_Score=141, Evalue=2e-34, Organism=Caenorhabditis elegans, GI17539652, Length=190, Percent_Identity=30.5263157894737, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 90423; Mature: 90423
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREKLRIMASSTGLESTNPPNRPWEQRAMARPPASTPSASSDRLAILNALTRKALWLSSW CCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCE TIHHANHIRPNIDGLKVGGHQASSASLATIMSALYFSVLRPEDRVAVKPHASPVFHAIQY EEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHH LFGRQTKEKLENFRGFKGAQSYPSRTKDVDDVDFSTGSVGLGVAQTLFSSLVQDYVKTHG HHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC WMKDRREGRMIALVGDAEMDEGNIFEALAEGWKHGLRNTWWIVDYNRQSLDAVVREGLWE CHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH KFETMFRNFGWDVVIVKYGRLMREAFAEPGGESLRRWIDNCPNALYAALCFQGGAAFRKH HHHHHHHHCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHHH IQDEIGDQGDVTRLLDNRSDDELLALMSNLGGHDMASMLEAFEQIDHDRPVCFIAYTIKG HHHHCCCCCCHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC VGLPFQGHKDNHAGLMTVAQMEKWRAEQNIRPGHEWDKFEGLTQDPATLEAFLASVPFNR CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCC DGRRLDDAVLDVPERLTFTAAAQMSTQQGFGLILNDLARSDIAMASRIVTSSPDVTVSTN CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC LGAWVNRRGLFAHAEKADLFRSEKIPSTFNWAASPKGQHIELGIAEMNLFIMASALGLSH CCCHHCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCC SINGARLLPIVTLYDPFIERGLDALNYACYQDARFMVVATPSGVTLAPEGGAHQSIATPL CCCCCEEEHHHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCHHHHHHH IGMAQDGLSSFEPAFVDELAAIMKWGFGHMQAAPGEGGSVYLRLSTRTVDQPQRIMTPEL HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCH EADIAAGAYWLRKPGPNAEVIIAYTGALAPEAIEATGLIGESRRDVGLLAVTSADRLHAG HHHHHHCEEEECCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCEEEEEECCCHHHHH WTAARSLRRHRRGVQHLSHIEQLLAPLPRDCGIVTVIDGHPAALGWLGSVRGHRVEALGV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEECH EKFGQTGTIDDLYRHNGMDANAIIDAAESLTGAPVRHRKMAV HHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHCCCC >Mature Secondary Structure MREKLRIMASSTGLESTNPPNRPWEQRAMARPPASTPSASSDRLAILNALTRKALWLSSW CCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCE TIHHANHIRPNIDGLKVGGHQASSASLATIMSALYFSVLRPEDRVAVKPHASPVFHAIQY EEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHH LFGRQTKEKLENFRGFKGAQSYPSRTKDVDDVDFSTGSVGLGVAQTLFSSLVQDYVKTHG HHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC WMKDRREGRMIALVGDAEMDEGNIFEALAEGWKHGLRNTWWIVDYNRQSLDAVVREGLWE CHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH KFETMFRNFGWDVVIVKYGRLMREAFAEPGGESLRRWIDNCPNALYAALCFQGGAAFRKH HHHHHHHHCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHHH IQDEIGDQGDVTRLLDNRSDDELLALMSNLGGHDMASMLEAFEQIDHDRPVCFIAYTIKG HHHHCCCCCCHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC VGLPFQGHKDNHAGLMTVAQMEKWRAEQNIRPGHEWDKFEGLTQDPATLEAFLASVPFNR CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCC DGRRLDDAVLDVPERLTFTAAAQMSTQQGFGLILNDLARSDIAMASRIVTSSPDVTVSTN CCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC LGAWVNRRGLFAHAEKADLFRSEKIPSTFNWAASPKGQHIELGIAEMNLFIMASALGLSH CCCHHCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCC SINGARLLPIVTLYDPFIERGLDALNYACYQDARFMVVATPSGVTLAPEGGAHQSIATPL CCCCCEEEHHHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCHHHHHHH IGMAQDGLSSFEPAFVDELAAIMKWGFGHMQAAPGEGGSVYLRLSTRTVDQPQRIMTPEL HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCCH EADIAAGAYWLRKPGPNAEVIIAYTGALAPEAIEATGLIGESRRDVGLLAVTSADRLHAG HHHHHHCEEEECCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCEEEEEECCCHHHHH WTAARSLRRHRRGVQHLSHIEQLLAPLPRDCGIVTVIDGHPAALGWLGSVRGHRVEALGV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEECH EKFGQTGTIDDLYRHNGMDANAIIDAAESLTGAPVRHRKMAV HHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA