Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 146339468

GI number: 146339468

Start: 2616194

End: 2617261

Strand: Direct

Name: yfdE [H]

Synonym: BRADO2455

Alternate gene names: 146339468

Gene position: 2616194-2617261 (Clockwise)

Preceding gene: 146339466

Following gene: 146339469

Centisome position: 35.09

GC content: 66.39

Gene sequence:

>1068_bases
ATGCTTGCAGATATGGGTGCGGAGGTGATCAAGATCGAGTCAGCCGAAGGTGAAACCATGCGCACGCGGCCGCCAATGCG
GCATGGCTGCTCTACCGCTTTTGGTCAGCTCAACGTCGGCAAGAAGAGCGTCGTGCTGGATCTCAAGTCACGCGAGGGCG
TCGATGCTGTGTGTCGGCTGGTCGCCGACGCGGATGTCCTGGTCGAGAACTTCCGGCCCGGCGTGATGCAGCGGCTCGGG
CTCGACTACGCCGCGCTGAGCGCGCGCAATCCGCGGCTGATCTACTGCTCGATCTCGGGCTACGGCCAGACCGGCCCGTC
GGCGGAACTGCCGGCCTATGCGCCGGTGATCCATGCCGCCTCGGGCTATGACATGGCGCATCTCGCCTACCAGCCGGGGC
GGGATCGCCCGGACTATTGCGGCATCTATCATGCCGACGTCGTCACCGGGACGTATGCCTTCGGCGCCATTGCCTCCGCT
CTGTATCAGCGCGAGCGTACCGGCCGCGGCCAGCACATCGACTGCTCGATGCTGGAATCGATGCTGAGCCTGACCTTGAA
CGAAATCCAATGGTCGCAATTTCCGGTGGTCCAGCCGTCCCGGCCGACCTTCGGCCCGGCGGCGTGCCGGGACGGCTACG
TGATGATCGCCATCGCCAGCGAGAAGACGTTCCAGAACCTGATGTCGGTGATCGGTCATCCCGAATGGACGAGCGATGCC
CGGTTCGCCAGATATTCCGACCGGCGGGCAAATTGGGGTGCGCTGATGGACGGGGTCGAGGCCTGGTCGGGCCGGCTTAG
CGTTGCCGACTGCGTCGCGGCGTTGAACTCCGGCGGCGTGCCGAGCTCCGCCTATCGCAGCGTTGCCGAGGCATTGGCCG
ATCCGCAGATCGCCCATCGCGGTGCCCTGGCTGACGTCGAGGACGACGCCGGCAGCTTCAAGGTCGTCAACCTGCCGTTC
CGAATGTCAGAGGCGAAGGTCGCGGCCGGCCCGCGTGCGGCGAGCCTCGGCGAGCACACCGCCGAGGTCCTCCGCGAGGC
GGCCGCGAACGCGCGCGACAATGGCTGA

Upstream 100 bases:

>100_bases
GAGTCTAGATCGAGAGCATGAGAGCCGTTTGACAGGATGCTTCGAAGGCCTGCGCGTGCTGGACTTTTCGACGACGATCG
CCGGCCCGCACTGTGCCCGC

Downstream 100 bases:

>100_bases
GGTTGCTGAGGCAAAGGCTGCAGGGCTGCCATGAGCACGCGCCATGCGGGCGGCCTTGCTGCTCCCCACGTTTCCAGCCA
ATGTTCCGGCCATCGCAAGA

Product: putative formyl-coenzyme A transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MLADMGAEVIKIESAEGETMRTRPPMRHGCSTAFGQLNVGKKSVVLDLKSREGVDAVCRLVADADVLVENFRPGVMQRLG
LDYAALSARNPRLIYCSISGYGQTGPSAELPAYAPVIHAASGYDMAHLAYQPGRDRPDYCGIYHADVVTGTYAFGAIASA
LYQRERTGRGQHIDCSMLESMLSLTLNEIQWSQFPVVQPSRPTFGPAACRDGYVMIAIASEKTFQNLMSVIGHPEWTSDA
RFARYSDRRANWGALMDGVEAWSGRLSVADCVAALNSGGVPSSAYRSVAEALADPQIAHRGALADVEDDAGSFKVVNLPF
RMSEAKVAAGPRAASLGEHTAEVLREAAANARDNG

Sequences:

>Translated_355_residues
MLADMGAEVIKIESAEGETMRTRPPMRHGCSTAFGQLNVGKKSVVLDLKSREGVDAVCRLVADADVLVENFRPGVMQRLG
LDYAALSARNPRLIYCSISGYGQTGPSAELPAYAPVIHAASGYDMAHLAYQPGRDRPDYCGIYHADVVTGTYAFGAIASA
LYQRERTGRGQHIDCSMLESMLSLTLNEIQWSQFPVVQPSRPTFGPAACRDGYVMIAIASEKTFQNLMSVIGHPEWTSDA
RFARYSDRRANWGALMDGVEAWSGRLSVADCVAALNSGGVPSSAYRSVAEALADPQIAHRGALADVEDDAGSFKVVNLPF
RMSEAKVAAGPRAASLGEHTAEVLREAAANARDNG
>Mature_355_residues
MLADMGAEVIKIESAEGETMRTRPPMRHGCSTAFGQLNVGKKSVVLDLKSREGVDAVCRLVADADVLVENFRPGVMQRLG
LDYAALSARNPRLIYCSISGYGQTGPSAELPAYAPVIHAASGYDMAHLAYQPGRDRPDYCGIYHADVVTGTYAFGAIASA
LYQRERTGRGQHIDCSMLESMLSLTLNEIQWSQFPVVQPSRPTFGPAACRDGYVMIAIASEKTFQNLMSVIGHPEWTSDA
RFARYSDRRANWGALMDGVEAWSGRLSVADCVAALNSGGVPSSAYRSVAEALADPQIAHRGALADVEDDAGSFKVVNLPF
RMSEAKVAAGPRAASLGEHTAEVLREAAANARDNG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=359, Percent_Identity=30.3621169916435, Blast_Score=167, Evalue=2e-41,
Organism=Homo sapiens, GI300863124, Length=384, Percent_Identity=28.3854166666667, Blast_Score=152, Evalue=3e-37,
Organism=Homo sapiens, GI300863126, Length=349, Percent_Identity=25.7879656160458, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI13376042, Length=384, Percent_Identity=25, Blast_Score=111, Evalue=8e-25,
Organism=Homo sapiens, GI266456254, Length=385, Percent_Identity=26.7532467532467, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI42794625, Length=385, Percent_Identity=26.7532467532467, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI266458393, Length=194, Percent_Identity=35.0515463917526, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI266458397, Length=194, Percent_Identity=35.0515463917526, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI42822893, Length=135, Percent_Identity=38.5185185185185, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI266458395, Length=135, Percent_Identity=38.5185185185185, Blast_Score=82, Evalue=6e-16,
Organism=Escherichia coli, GI87082093, Length=359, Percent_Identity=33.983286908078, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1788717, Length=385, Percent_Identity=28.8311688311688, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786222, Length=376, Percent_Identity=25, Blast_Score=84, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=292, Percent_Identity=27.3972602739726, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI115535051, Length=280, Percent_Identity=27.1428571428571, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648431, Length=360, Percent_Identity=32.2222222222222, Blast_Score=153, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24585488, Length=203, Percent_Identity=34.4827586206897, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 38091; Mature: 38091

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLADMGAEVIKIESAEGETMRTRPPMRHGCSTAFGQLNVGKKSVVLDLKSREGVDAVCRL
CCCCCCCCEEEEECCCCCCCCCCCCHHHCCHHHHCCCCCCCEEEEEEECCCCCHHHHHHH
VADADVLVENFRPGVMQRLGLDYAALSARNPRLIYCSISGYGQTGPSAELPAYAPVIHAA
HHHHHHHHHHCCHHHHHHHCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCC
SGYDMAHLAYQPGRDRPDYCGIYHADVVTGTYAFGAIASALYQRERTGRGQHIDCSMLES
CCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
MLSLTLNEIQWSQFPVVQPSRPTFGPAACRDGYVMIAIASEKTFQNLMSVIGHPEWTSDA
HHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCC
RFARYSDRRANWGALMDGVEAWSGRLSVADCVAALNSGGVPSSAYRSVAEALADPQIAHR
HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHC
GALADVEDDAGSFKVVNLPFRMSEAKVAAGPRAASLGEHTAEVLREAAANARDNG
CCCCCCCCCCCCEEEEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLADMGAEVIKIESAEGETMRTRPPMRHGCSTAFGQLNVGKKSVVLDLKSREGVDAVCRL
CCCCCCCCEEEEECCCCCCCCCCCCHHHCCHHHHCCCCCCCEEEEEEECCCCCHHHHHHH
VADADVLVENFRPGVMQRLGLDYAALSARNPRLIYCSISGYGQTGPSAELPAYAPVIHAA
HHHHHHHHHHCCHHHHHHHCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCC
SGYDMAHLAYQPGRDRPDYCGIYHADVVTGTYAFGAIASALYQRERTGRGQHIDCSMLES
CCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
MLSLTLNEIQWSQFPVVQPSRPTFGPAACRDGYVMIAIASEKTFQNLMSVIGHPEWTSDA
HHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCC
RFARYSDRRANWGALMDGVEAWSGRLSVADCVAALNSGGVPSSAYRSVAEALADPQIAHR
HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHC
GALADVEDDAGSFKVVNLPFRMSEAKVAAGPRAASLGEHTAEVLREAAANARDNG
CCCCCCCCCCCCEEEEECCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]