| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146339390
Identifier: 146339390
GI number: 146339390
Start: 2527759
End: 2528478
Strand: Direct
Name: 146339390
Synonym: BRADO2375
Alternate gene names: NA
Gene position: 2527759-2528478 (Clockwise)
Preceding gene: 146339387
Following gene: 146339391
Centisome position: 33.9
GC content: 68.47
Gene sequence:
>720_bases ATGAAACCGGAGGTGATCTGCCTGATGGCCTCGAGCGTCGATGGCCGGACCTGGCCGAGCCGCTGGCGGCCGAAGGGCTC GGGCGACCTGTTCGAGCAGGTCCACGAGAAGCTCGGCGGCGATGCCTGGCTGATCGGCCGCGTCACCGGCCAGGAATTCG CCAAGGGCACGACCTATCCCGCGACGACGACCGAACGCTTTCCGCGCGAGAACTGGATCGCGAGGCGCGAGGCCAAGGCC TATGGCGTGGTGCTCGACGGCCAGGGCAAGATCTGCTGGGGACGTTCGGACATCGGCGGCGATCCGATCGTCGTCGTGCT CACCGAAGCCGTTTCGGATGCCCATCTCGCAGGTCTGCGCAGCGAGGGCGTCTCCTACATCTTCGCCGGCGCAACCTCGA TCGACCTGCCGCGCGTCCTCGACATCCTCTCGCGCGAGCTCGGCGTCAAGCGTCTGCTGCTCGAAGGGGGCGGCCATGTC AACGGCACGTTCCTGCGCGCCGGGCTGGTCGACGAGCTCAACCTCGTGCTGTGTCCGGCCGTGGACGGCGCGAAGGGCGC GCCGATGGTGTTCGATTCCTCGGAGGCCGAATCCGACCAGCGCGCGCCTGTGACGGCGATGTCGCTGGAAAGCACGACGG CGCTGGAAGGCGGGGCGCTGTGGCTGCGTTACAAGCTCACCAACGCCGCCGCCGTGCCGGCCCAGGCCAGCCATGGATGA
Upstream 100 bases:
>100_bases TCGACCGGCGGCATGGCGGCATCGAACGAAACCCACGCCGCTTCGTTGACAACGCCGCGGCGGCCCTGTTCGGTGGGCCG TCAAACGGCAAGGAGGATGC
Downstream 100 bases:
>100_bases GCGAAGCGATCACGTCATCATCGTCGGCGCCGGCGCTGCGGGACTGATGGCCGCGCGCGAGCTGTCGCGCGCCGGCCGCA CGGTGACGCTGCTCGAGGCG
Product: putative 5-amino-6-(5-phosphoribosylamino)uracil reductase
Products: NA
Alternate protein names: Bifunctional Deaminase-Reductase Domain Protein; Deaminase-Reductase Domain-Containing Protein; Riboflavin-Specific Deaminase; Bifunctional Deaminase-Reductase Domain-Containing Protein; Pyrimidine Reductase; 5-Amino-6-(5-Phosphoribosylamino)Uracil Reductase Protein; Ribd Domain Protein; Pyrimidine Reductase Riboflavin Biosynthesis; 5-Amino-6-(5-Phosphoribosylamino) Uracil Reductase; RibD-Family Protein
Number of amino acids: Translated: 239; Mature: 239
Protein sequence:
>239_residues MKPEVICLMASSVDGRTWPSRWRPKGSGDLFEQVHEKLGGDAWLIGRVTGQEFAKGTTYPATTTERFPRENWIARREAKA YGVVLDGQGKICWGRSDIGGDPIVVVLTEAVSDAHLAGLRSEGVSYIFAGATSIDLPRVLDILSRELGVKRLLLEGGGHV NGTFLRAGLVDELNLVLCPAVDGAKGAPMVFDSSEAESDQRAPVTAMSLESTTALEGGALWLRYKLTNAAAVPAQASHG
Sequences:
>Translated_239_residues MKPEVICLMASSVDGRTWPSRWRPKGSGDLFEQVHEKLGGDAWLIGRVTGQEFAKGTTYPATTTERFPRENWIARREAKA YGVVLDGQGKICWGRSDIGGDPIVVVLTEAVSDAHLAGLRSEGVSYIFAGATSIDLPRVLDILSRELGVKRLLLEGGGHV NGTFLRAGLVDELNLVLCPAVDGAKGAPMVFDSSEAESDQRAPVTAMSLESTTALEGGALWLRYKLTNAAAVPAQASHG >Mature_239_residues MKPEVICLMASSVDGRTWPSRWRPKGSGDLFEQVHEKLGGDAWLIGRVTGQEFAKGTTYPATTTERFPRENWIARREAKA YGVVLDGQGKICWGRSDIGGDPIVVVLTEAVSDAHLAGLRSEGVSYIFAGATSIDLPRVLDILSRELGVKRLLLEGGGHV NGTFLRAGLVDELNLVLCPAVDGAKGAPMVFDSSEAESDQRAPVTAMSLESTTALEGGALWLRYKLTNAAAVPAQASHG
Specific function: Unknown
COG id: COG1985
COG function: function code H; Pyrimidine reductase, riboflavin biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25518; Mature: 25518
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPEVICLMASSVDGRTWPSRWRPKGSGDLFEQVHEKLGGDAWLIGRVTGQEFAKGTTYP CCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCC ATTTERFPRENWIARREAKAYGVVLDGQGKICWGRSDIGGDPIVVVLTEAVSDAHLAGLR CCCHHHCCCHHHHHHHCCCEEEEEECCCCCEEECCCCCCCCCEEEEEECHHCHHHHHHHH SEGVSYIFAGATSIDLPRVLDILSRELGVKRLLLEGGGHVNGTFLRAGLVDELNLVLCPA CCCCEEEEECCCCCCHHHHHHHHHHHHCHHEEEHHCCCCCCCEEEECCCCCCCCEEEEEC VDGAKGAPMVFDSSEAESDQRAPVTAMSLESTTALEGGALWLRYKLTNAAAVPAQASHG CCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEECCCEEEEEEEECCCEECCCCCCCC >Mature Secondary Structure MKPEVICLMASSVDGRTWPSRWRPKGSGDLFEQVHEKLGGDAWLIGRVTGQEFAKGTTYP CCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCC ATTTERFPRENWIARREAKAYGVVLDGQGKICWGRSDIGGDPIVVVLTEAVSDAHLAGLR CCCHHHCCCHHHHHHHCCCEEEEEECCCCCEEECCCCCCCCCEEEEEECHHCHHHHHHHH SEGVSYIFAGATSIDLPRVLDILSRELGVKRLLLEGGGHVNGTFLRAGLVDELNLVLCPA CCCCEEEEECCCCCCHHHHHHHHHHHHCHHEEEHHCCCCCCCEEEECCCCCCCCEEEEEC VDGAKGAPMVFDSSEAESDQRAPVTAMSLESTTALEGGALWLRYKLTNAAAVPAQASHG CCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEECCCEEEEEEEECCCEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA