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The map label for this gene is yncD [H]

Identifier: 146338978

GI number: 146338978

Start: 2046198

End: 2048582

Strand: Direct

Name: yncD [H]

Synonym: BRADO1925

Alternate gene names: 146338978

Gene position: 2046198-2048582 (Clockwise)

Preceding gene: 146338976

Following gene: 146338980

Centisome position: 27.44

GC content: 63.35

Gene sequence:

>2385_bases
TTGACCAGGCTCTCGGCACTGAAAAGTGCTCTACTTGCGACGTGCGCGTTGCTGCCGACCGCTGTCTTCGCACAGCAGAC
CCTGCAGACCATCGAGGTCGTCGGCGTCTCGCCGGTGCAGGGCAGCGAGATGGCGAAAGACAAGATCCCCTCCAATGTCG
AGACCATCGGGACGCGCGAGCTGGATCATAGCCGTGCCCCGTCGCTGCTCGACAATATCCTGCAATCGGTGCCCGGCGTC
TCCTTGAGTGATCAGTCCGGCAATACGTTCCAGCGCAATCTGGATTATCGCGGCCAGACCGCCTCGCCGGTGCTCGGCAC
GCCGCAGGGTATCGCCGTCTACCAGAACGGCACCCGCATCAACGAGGCGTTCGGCGACGTCGTCAACTGGGACCTGATCC
CGGAGATGGCGATCGCGCGCATGACGCTGATGCCGAACAATCCGTTGTTCGGCCTCAACGCCACCGGCGGCGCGCTGTCG
ATCGAGATGAAGAACGGCTTCACCTATCAGGGCGGCGAAGCGCAGCTGTTCGGCGGCTCGTTCGGCCGCATCCAGTCGGG
CGCGCAGTATGGCTGGAACAACGGCACGTACTCGGCCTATATCGCGGCCGAAGGCGCCTATGACCGCGGCTGGCGCGACT
TCTCATCGGCCTCGCAGATCCGGCGCATGTACGCTGATTTCGGCGCGCGCGGCGACACCACCGAATTCCATCTCTCCTTC
ACCGGCGCCGACAACAGGCTCGGCTCAGTCGCGGCGACGCCGATCGAGATGCTGAACAACCGCTGGTCCAGCGTCTACAC
CTGGCCGCAGTCGCTGCATCTTCAGATGCAGATGGTGCAGGCCAGCGCCAAATGGACGCCCAACGAGACCTGGACCTTGC
AGGCCAACGGCTACTATCGCAACTACAAGTCGGCGCGCGTGGACGGCAACGGCACGGATGCGCAGGCCTGCGACCTGGGA
ATCGGCCTCGACAATCAATTCTGCATCGGGGATGGTCAGACTCCGTTGAACCAGAACGTGCCGACGTTCAATACGTTGGC
CGGCGATACGGCGCTCGGCCAGATCGACCGCAACAGCGTCAAGACCGACAGCTATGGCGGCTCGCTGCAGGCGACCTCGA
CGACGCAGCTGTTCGGCCATGACAACCATTTCGTCGTCGGCGCCAGCGTGGATCATGGCAACACCAACTTTGCGGCAACC
TCCGAGCTCGGCACCATCGACAACAATCTGTTTGTGACCGGCCTCGGTGTGTTCGTCGACCAGCCCAACGCCGGCCTTGC
GCCGGTCAATCTGAACGCCAAGAACACCTATCTCGGCATCTACGCGACCAACACCTTCGACATCACCTCGCAGCTCGCCT
TCACGGCCGGCGGCCGCTTCAACTGGGCCCAGATCAATCTGCGGGACCAGGGCGGAAACCTGCCGCTGCTGAACAGCAAC
AACAACTTCCAGCGCTTCAATCCGGTCGCCGGCTTCACCTACAAGTTCACGCCGAACATCACCGGATATGCCGGCTACTC
CGAGGCCAACCGCGCGCCGACCCCGCTCGAGCTCGGCTGCTCGGACCCGAACAATCCCTGCCTGATCGACAACTTCCTAA
TCGCCGATCCGCCGCTGAAGCAGGTGGTGTCGCGCACCATCGAAGGCGGCCTGCGCGGCGAGATCTCCGGCGGCGCGTCC
GCCTTTGCCGCGGCGCCGCCGCCCTATCGCAAGGCACCGATCAAGGCGGTGTCGGTCGATGACGGCTGGAAGCTGCGCTG
GGGCCTCAGCCTGTTCCGCACCGAGAATTCCGACGACATCATCCAGGTTGTCGATCCGGCCAACCCCGTACGCGGCTATT
TCAAGAACGCCGGCACCACGCTGCGCCAGGGCGTCGAGGCCAAGCTCGACCTGACCTGGAACCGCTGGACTGCCTACGCC
AACTACACCTTCATCGATGCGACCTTCCGCAGTGCCTTCGACGTCAATGATCCGTTCCTGCAGGCTCCTGTCGGAGTTGT
CTCGGGCAACCACATTCCCGGCATCCCGGCGCACCGCCTGAAGCTCGGGGCCGACTATGCCGTGACCGATGACTGGAAGG
TCGGCGCCAGCTTCAACTATGTCGGCAGCCAGTATCTGCTGCATGACGAGACCAACGTCTATCCGAAGGTCCCGTCCTAC
TGGGTCGTGAACGTGAACACGTCGTACCAGGTCACCAAGAATGTCGAGGTGTTCGGGCTGATCCAGAACCTGTTCAACCA
GCGCTACTACTCGTCCGGCACGGTGTTCAATACGGGCGGCTTCAACACTGCCGGCGGCGGCAACGCCTTTGCCTTCAACG
ATCCGCGCAGCGTCGTGCCGGGCATGCCGCTCGCCGCCTATGCGGGCATCCGCGCGAAGTTCTGA

Upstream 100 bases:

>100_bases
TTACCGTTCGTATTGTGCGGGAATGGACCGGATCTGAAGCGGGCGGGGCTCAGGGGCGTGAGCTGGCTCCGGGCCGGTCG
ACAAGAAACTGGGGGACGTC

Downstream 100 bases:

>100_bases
GCCAGCCGATCAAAGGCGCGTCGGCGCCGCGCCACGGAAAGCCCCCGCCGTGGCAAGAAGGCCGGGAGAAATCCCGGCCT
TTCGTCTGTCTTCCGCTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 794; Mature: 793

Protein sequence:

>794_residues
MTRLSALKSALLATCALLPTAVFAQQTLQTIEVVGVSPVQGSEMAKDKIPSNVETIGTRELDHSRAPSLLDNILQSVPGV
SLSDQSGNTFQRNLDYRGQTASPVLGTPQGIAVYQNGTRINEAFGDVVNWDLIPEMAIARMTLMPNNPLFGLNATGGALS
IEMKNGFTYQGGEAQLFGGSFGRIQSGAQYGWNNGTYSAYIAAEGAYDRGWRDFSSASQIRRMYADFGARGDTTEFHLSF
TGADNRLGSVAATPIEMLNNRWSSVYTWPQSLHLQMQMVQASAKWTPNETWTLQANGYYRNYKSARVDGNGTDAQACDLG
IGLDNQFCIGDGQTPLNQNVPTFNTLAGDTALGQIDRNSVKTDSYGGSLQATSTTQLFGHDNHFVVGASVDHGNTNFAAT
SELGTIDNNLFVTGLGVFVDQPNAGLAPVNLNAKNTYLGIYATNTFDITSQLAFTAGGRFNWAQINLRDQGGNLPLLNSN
NNFQRFNPVAGFTYKFTPNITGYAGYSEANRAPTPLELGCSDPNNPCLIDNFLIADPPLKQVVSRTIEGGLRGEISGGAS
AFAAAPPPYRKAPIKAVSVDDGWKLRWGLSLFRTENSDDIIQVVDPANPVRGYFKNAGTTLRQGVEAKLDLTWNRWTAYA
NYTFIDATFRSAFDVNDPFLQAPVGVVSGNHIPGIPAHRLKLGADYAVTDDWKVGASFNYVGSQYLLHDETNVYPKVPSY
WVVNVNTSYQVTKNVEVFGLIQNLFNQRYYSSGTVFNTGGFNTAGGGNAFAFNDPRSVVPGMPLAAYAGIRAKF

Sequences:

>Translated_794_residues
MTRLSALKSALLATCALLPTAVFAQQTLQTIEVVGVSPVQGSEMAKDKIPSNVETIGTRELDHSRAPSLLDNILQSVPGV
SLSDQSGNTFQRNLDYRGQTASPVLGTPQGIAVYQNGTRINEAFGDVVNWDLIPEMAIARMTLMPNNPLFGLNATGGALS
IEMKNGFTYQGGEAQLFGGSFGRIQSGAQYGWNNGTYSAYIAAEGAYDRGWRDFSSASQIRRMYADFGARGDTTEFHLSF
TGADNRLGSVAATPIEMLNNRWSSVYTWPQSLHLQMQMVQASAKWTPNETWTLQANGYYRNYKSARVDGNGTDAQACDLG
IGLDNQFCIGDGQTPLNQNVPTFNTLAGDTALGQIDRNSVKTDSYGGSLQATSTTQLFGHDNHFVVGASVDHGNTNFAAT
SELGTIDNNLFVTGLGVFVDQPNAGLAPVNLNAKNTYLGIYATNTFDITSQLAFTAGGRFNWAQINLRDQGGNLPLLNSN
NNFQRFNPVAGFTYKFTPNITGYAGYSEANRAPTPLELGCSDPNNPCLIDNFLIADPPLKQVVSRTIEGGLRGEISGGAS
AFAAAPPPYRKAPIKAVSVDDGWKLRWGLSLFRTENSDDIIQVVDPANPVRGYFKNAGTTLRQGVEAKLDLTWNRWTAYA
NYTFIDATFRSAFDVNDPFLQAPVGVVSGNHIPGIPAHRLKLGADYAVTDDWKVGASFNYVGSQYLLHDETNVYPKVPSY
WVVNVNTSYQVTKNVEVFGLIQNLFNQRYYSSGTVFNTGGFNTAGGGNAFAFNDPRSVVPGMPLAAYAGIRAKF
>Mature_793_residues
TRLSALKSALLATCALLPTAVFAQQTLQTIEVVGVSPVQGSEMAKDKIPSNVETIGTRELDHSRAPSLLDNILQSVPGVS
LSDQSGNTFQRNLDYRGQTASPVLGTPQGIAVYQNGTRINEAFGDVVNWDLIPEMAIARMTLMPNNPLFGLNATGGALSI
EMKNGFTYQGGEAQLFGGSFGRIQSGAQYGWNNGTYSAYIAAEGAYDRGWRDFSSASQIRRMYADFGARGDTTEFHLSFT
GADNRLGSVAATPIEMLNNRWSSVYTWPQSLHLQMQMVQASAKWTPNETWTLQANGYYRNYKSARVDGNGTDAQACDLGI
GLDNQFCIGDGQTPLNQNVPTFNTLAGDTALGQIDRNSVKTDSYGGSLQATSTTQLFGHDNHFVVGASVDHGNTNFAATS
ELGTIDNNLFVTGLGVFVDQPNAGLAPVNLNAKNTYLGIYATNTFDITSQLAFTAGGRFNWAQINLRDQGGNLPLLNSNN
NFQRFNPVAGFTYKFTPNITGYAGYSEANRAPTPLELGCSDPNNPCLIDNFLIADPPLKQVVSRTIEGGLRGEISGGASA
FAAAPPPYRKAPIKAVSVDDGWKLRWGLSLFRTENSDDIIQVVDPANPVRGYFKNAGTTLRQGVEAKLDLTWNRWTAYAN
YTFIDATFRSAFDVNDPFLQAPVGVVSGNHIPGIPAHRLKLGADYAVTDDWKVGASFNYVGSQYLLHDETNVYPKVPSYW
VVNVNTSYQVTKNVEVFGLIQNLFNQRYYSSGTVFNTGGFNTAGGGNAFAFNDPRSVVPGMPLAAYAGIRAKF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=197, Percent_Identity=31.9796954314721, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 85915; Mature: 85784

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLSALKSALLATCALLPTAVFAQQTLQTIEVVGVSPVQGSEMAKDKIPSNVETIGTRE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHCCCCHHHCCCCC
LDHSRAPSLLDNILQSVPGVSLSDQSGNTFQRNLDYRGQTASPVLGTPQGIAVYQNGTRI
CCCCCCHHHHHHHHHHCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCH
NEAFGDVVNWDLIPEMAIARMTLMPNNPLFGLNATGGALSIEMKNGFTYQGGEAQLFGGS
HHHHCCCCCCCCCHHHHHEEEEECCCCCEEEEECCCCEEEEEECCCEEECCCCEEEECCC
FGRIQSGAQYGWNNGTYSAYIAAEGAYDRGWRDFSSASQIRRMYADFGARGDTTEFHLSF
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE
TGADNRLGSVAATPIEMLNNRWSSVYTWPQSLHLQMQMVQASAKWTPNETWTLQANGYYR
ECCCCCCCCCCCCHHHHHCCCCCEEEECCHHHEEEEEEEHHCCCCCCCCEEEEEECCEEE
NYKSARVDGNGTDAQACDLGIGLDNQFCIGDGQTPLNQNVPTFNTLAGDTALGQIDRNSV
CCCCEEECCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
KTDSYGGSLQATSTTQLFGHDNHFVVGASVDHGNTNFAATSELGTIDNNLFVTGLGVFVD
CCCCCCCEEEECCEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCCCEEEEEEEEEEE
QPNAGLAPVNLNAKNTYLGIYATNTFDITSQLAFTAGGRFNWAQINLRDQGGNLPLLNSN
CCCCCEEEEECCCCCEEEEEEEECEECCCCEEEEECCCCEEEEEEEEECCCCCEEEECCC
NNFQRFNPVAGFTYKFTPNITGYAGYSEANRAPTPLELGCSDPNNPCLIDNFLIADPPLK
CCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECEEECCCCHH
QVVSRTIEGGLRGEISGGASAFAAAPPPYRKAPIKAVSVDDGWKLRWGLSLFRTENSDDI
HHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECEEEEECCCCCCE
IQVVDPANPVRGYFKNAGTTLRQGVEAKLDLTWNRWTAYANYTFIDATFRSAFDVNDPFL
EEEECCCCHHHHHHHCCCHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEHHHHCCCCCCHH
QAPVGVVSGNHIPGIPAHRLKLGADYAVTDDWKVGASFNYVGSQYLLHDETNVYPKVPSY
HCCEEEECCCCCCCCCHHHEEECCCEEECCCEEECCEEEECCCEEEEECCCCCCCCCCCE
WVVNVNTSYQVTKNVEVFGLIQNLFNQRYYSSGTVFNTGGFNTAGGGNAFAFNDPRSVVP
EEEEECCCEEEECCCHHHHHHHHHHHHHEECCCCEEECCCCCCCCCCCEEEECCCHHHCC
GMPLAAYAGIRAKF
CCCHHHHCCCCCCC
>Mature Secondary Structure 
TRLSALKSALLATCALLPTAVFAQQTLQTIEVVGVSPVQGSEMAKDKIPSNVETIGTRE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHCCCCHHHCCCCC
LDHSRAPSLLDNILQSVPGVSLSDQSGNTFQRNLDYRGQTASPVLGTPQGIAVYQNGTRI
CCCCCCHHHHHHHHHHCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCH
NEAFGDVVNWDLIPEMAIARMTLMPNNPLFGLNATGGALSIEMKNGFTYQGGEAQLFGGS
HHHHCCCCCCCCCHHHHHEEEEECCCCCEEEEECCCCEEEEEECCCEEECCCCEEEECCC
FGRIQSGAQYGWNNGTYSAYIAAEGAYDRGWRDFSSASQIRRMYADFGARGDTTEFHLSF
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEE
TGADNRLGSVAATPIEMLNNRWSSVYTWPQSLHLQMQMVQASAKWTPNETWTLQANGYYR
ECCCCCCCCCCCCHHHHHCCCCCEEEECCHHHEEEEEEEHHCCCCCCCCEEEEEECCEEE
NYKSARVDGNGTDAQACDLGIGLDNQFCIGDGQTPLNQNVPTFNTLAGDTALGQIDRNSV
CCCCEEECCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC
KTDSYGGSLQATSTTQLFGHDNHFVVGASVDHGNTNFAATSELGTIDNNLFVTGLGVFVD
CCCCCCCEEEECCEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCCCEEEEEEEEEEE
QPNAGLAPVNLNAKNTYLGIYATNTFDITSQLAFTAGGRFNWAQINLRDQGGNLPLLNSN
CCCCCEEEEECCCCCEEEEEEEECEECCCCEEEEECCCCEEEEEEEEECCCCCEEEECCC
NNFQRFNPVAGFTYKFTPNITGYAGYSEANRAPTPLELGCSDPNNPCLIDNFLIADPPLK
CCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECEEECCCCHH
QVVSRTIEGGLRGEISGGASAFAAAPPPYRKAPIKAVSVDDGWKLRWGLSLFRTENSDDI
HHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECEEEEECCCCCCE
IQVVDPANPVRGYFKNAGTTLRQGVEAKLDLTWNRWTAYANYTFIDATFRSAFDVNDPFL
EEEECCCCHHHHHHHCCCHHHHCCCCEEEEEEEEEEEEEEEEEEEEEEHHHHCCCCCCHH
QAPVGVVSGNHIPGIPAHRLKLGADYAVTDDWKVGASFNYVGSQYLLHDETNVYPKVPSY
HCCEEEECCCCCCCCCHHHEEECCCEEECCCEEECCEEEECCCEEEEECCCCCCCCCCCE
WVVNVNTSYQVTKNVEVFGLIQNLFNQRYYSSGTVFNTGGFNTAGGGNAFAFNDPRSVVP
EEEEECCCEEEECCCHHHHHHHHHHHHHEECCCCEEECCCCCCCCCCCEEEECCCHHHCC
GMPLAAYAGIRAKF
CCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]