| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146338970
Identifier: 146338970
GI number: 146338970
Start: 2038383
End: 2040125
Strand: Direct
Name: 146338970
Synonym: BRADO1914
Alternate gene names: NA
Gene position: 2038383-2040125 (Clockwise)
Preceding gene: 146338969
Following gene: 146338971
Centisome position: 27.34
GC content: 63.28
Gene sequence:
>1743_bases ATGACCAGCGCGGTCGCGCTGTTCGCCGCGACCATGACGTTGTCCCTGCCGGCGCGTTCGGACGACGCCACGATCCAGAA GTGGATCGACAGCGAATTCCAGCCGTCGACCTTGTCGAAGGAAGAGCAGCTCAAGGAGCTGCAATGGTTCGCCAAGGCCG CCGAGCCCTTCAAGGGCATGGAGATCAACGTCGTCTCCGAGACCATCACGACTCACGAATACGAGTCGAAGACCCTCGCC AAGGCCTTCACCGAGATCACCGGCATCAAGCTCAAGCACGACATCATCCAGGAAGGTGACGTCGTCGAGAAGCTGCAGAC CCAAATGCAGTCCGGCAAGAACGTCTATGACGGCTGGATCAACGACTCCGACCTGATCGGCACCCACTTCCGCTACGGCC AGACCATCGCGCTCTCGGACTACATGAAGGGCGAGGGCAAGGACGTCACCGATCCGTATCTCGACGTCAACGACTTCATC GGCAAGTCGTTCACGACCGCGCCGGACGGCAAGCTCTATCAGCTGCCCGACCAGCAGTTCGCGAACCTCTATTGGTTCCG CTACGACTGGTTCACCAACCCGGACTACAAGGCCAAGTTCAAGGCCAAGTACGGCTATGACCTCGGCGTGCCGGTGAACT GGTCGGCCTACGAGGACATCGCCGAGTTCTTCACGAACGACATCAAGGAGATCAACGGCGTCAAGGTCTATGGCCACATG GACTACGGCAAGAAGGATCCCTCGCTCGGCTGGCGCTTCACCGACGCCTGGCTGTCGATGGCCGGCAACGGCGACAAGGG CATCCCGAACGGCCTGCCGGTCGACGAATGGGGCATCCGCATGGAAGGCTGCCGTCCGGTCGGCTCCTCGGTCGAGCGTG GTGGCGACACCAACGGCCCCGCCGCCGTCTACTCGATCACCAAGTATCTCGACTGGATGAAGAAGTACGCGCCGCCGCAG GCGCAGGGCATGACCTTCTCCGAGGCCGGCCCGGTCCCGGCGCAGGGCAACGTCGCCCAGCAGATCTTCTGGTACACCGC CTTCACCGCCGACATGGTGAAGCCCGGCCTGCCGGTGGTGAACGCGGACGGCACGCCGAAGTGGCGCATGGCTCCGTCGC CGCACGGCGCCTACTGGAAGGACGGCATGAAGCTCGGCTATCAGGACGCCGGCTCGCTGACGCTCCTGAAGTCGACCCCG CCGGATCGCCGCAAGGCCGCCTGGCTGTACCTGCAGTTCATCGTCTCCAAGTCGGTGAGCTTGAAGAAGAGCCATGTCGG TCTCACCTTCATTCGTGAATCCGACATCTGGGACAAGTCGTTCACCGAGCGTGCGCCGAAGCTCGGCGGCCTGATCGAGT TCTACCGCTCGCCCGCGCGCGTGCAGTGGACCCCGACCGGCAACAACGTGCCCGACTATCCGAAGCTCGCGCAGCTGTGG TGGCAGAACATCGGCGATGCGTCGTCCGGTGCGAAGACCCCGCAGGCTGCGATGGACGCGCTCGCGGCCGCTCAGGACTC CGTCCTCGAGCGTCTCGAGAAGTCCAAGGTCCAGGGTGACTGCGGTCCGAAGCTGAACAAGAAGGAATCGGCCGAGTTCT GGTTCAACAAGTCGGCGAAGGACGGCAACATCGCTCCGCAGCGCAAGCTCGCGAACGAGAAGCCGAAGGGCGAGACGATC GACTACGACACGCTGATCAAGTCGTGGCCGGCGACCCCGCCCAAGCGCGCCGAAGCCAAGTAA
Upstream 100 bases:
>100_bases GACAAACCCGGACCTGGGGTACGTCTGTCGCTGCAAGGAGGAAACCATGCGACACTTGAAACGTAGGAAGCATCACCCGA GCAAGGCCGGGTATCTGGCG
Downstream 100 bases:
>100_bases GCGGTTTCACAATGATCGCCCGGCTCGGCCGGGCGGTCCCCTCCTTGAGGCCGGGAGCAATCCCGGCCTTTTCTTTTGTG GCAATGCGATCAGCTCTCGT
Product: putative periplasmic binding ABC transporter protein, sugar binding signal peptide
Products: NA
Alternate protein names: ABC-Type Sugar Transport System Periplasmic Component; Sugar ABC Transporter; Twin-Arginine Translocation Pathway Signal; Abc-Type Sugar Transport System Periplasmic Component
Number of amino acids: Translated: 580; Mature: 579
Protein sequence:
>580_residues MTSAVALFAATMTLSLPARSDDATIQKWIDSEFQPSTLSKEEQLKELQWFAKAAEPFKGMEINVVSETITTHEYESKTLA KAFTEITGIKLKHDIIQEGDVVEKLQTQMQSGKNVYDGWINDSDLIGTHFRYGQTIALSDYMKGEGKDVTDPYLDVNDFI GKSFTTAPDGKLYQLPDQQFANLYWFRYDWFTNPDYKAKFKAKYGYDLGVPVNWSAYEDIAEFFTNDIKEINGVKVYGHM DYGKKDPSLGWRFTDAWLSMAGNGDKGIPNGLPVDEWGIRMEGCRPVGSSVERGGDTNGPAAVYSITKYLDWMKKYAPPQ AQGMTFSEAGPVPAQGNVAQQIFWYTAFTADMVKPGLPVVNADGTPKWRMAPSPHGAYWKDGMKLGYQDAGSLTLLKSTP PDRRKAAWLYLQFIVSKSVSLKKSHVGLTFIRESDIWDKSFTERAPKLGGLIEFYRSPARVQWTPTGNNVPDYPKLAQLW WQNIGDASSGAKTPQAAMDALAAAQDSVLERLEKSKVQGDCGPKLNKKESAEFWFNKSAKDGNIAPQRKLANEKPKGETI DYDTLIKSWPATPPKRAEAK
Sequences:
>Translated_580_residues MTSAVALFAATMTLSLPARSDDATIQKWIDSEFQPSTLSKEEQLKELQWFAKAAEPFKGMEINVVSETITTHEYESKTLA KAFTEITGIKLKHDIIQEGDVVEKLQTQMQSGKNVYDGWINDSDLIGTHFRYGQTIALSDYMKGEGKDVTDPYLDVNDFI GKSFTTAPDGKLYQLPDQQFANLYWFRYDWFTNPDYKAKFKAKYGYDLGVPVNWSAYEDIAEFFTNDIKEINGVKVYGHM DYGKKDPSLGWRFTDAWLSMAGNGDKGIPNGLPVDEWGIRMEGCRPVGSSVERGGDTNGPAAVYSITKYLDWMKKYAPPQ AQGMTFSEAGPVPAQGNVAQQIFWYTAFTADMVKPGLPVVNADGTPKWRMAPSPHGAYWKDGMKLGYQDAGSLTLLKSTP PDRRKAAWLYLQFIVSKSVSLKKSHVGLTFIRESDIWDKSFTERAPKLGGLIEFYRSPARVQWTPTGNNVPDYPKLAQLW WQNIGDASSGAKTPQAAMDALAAAQDSVLERLEKSKVQGDCGPKLNKKESAEFWFNKSAKDGNIAPQRKLANEKPKGETI DYDTLIKSWPATPPKRAEAK >Mature_579_residues TSAVALFAATMTLSLPARSDDATIQKWIDSEFQPSTLSKEEQLKELQWFAKAAEPFKGMEINVVSETITTHEYESKTLAK AFTEITGIKLKHDIIQEGDVVEKLQTQMQSGKNVYDGWINDSDLIGTHFRYGQTIALSDYMKGEGKDVTDPYLDVNDFIG KSFTTAPDGKLYQLPDQQFANLYWFRYDWFTNPDYKAKFKAKYGYDLGVPVNWSAYEDIAEFFTNDIKEINGVKVYGHMD YGKKDPSLGWRFTDAWLSMAGNGDKGIPNGLPVDEWGIRMEGCRPVGSSVERGGDTNGPAAVYSITKYLDWMKKYAPPQA QGMTFSEAGPVPAQGNVAQQIFWYTAFTADMVKPGLPVVNADGTPKWRMAPSPHGAYWKDGMKLGYQDAGSLTLLKSTPP DRRKAAWLYLQFIVSKSVSLKKSHVGLTFIRESDIWDKSFTERAPKLGGLIEFYRSPARVQWTPTGNNVPDYPKLAQLWW QNIGDASSGAKTPQAAMDALAAAQDSVLERLEKSKVQGDCGPKLNKKESAEFWFNKSAKDGNIAPQRKLANEKPKGETID YDTLIKSWPATPPKRAEAK
Specific function: Unknown
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64847; Mature: 64715
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSAVALFAATMTLSLPARSDDATIQKWIDSEFQPSTLSKEEQLKELQWFAKAAEPFKGM CCCHHHHHHHHHEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC EINVVSETITTHEYESKTLAKAFTEITGIKLKHDIIQEGDVVEKLQTQMQSGKNVYDGWI EEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCEEECCCC NDSDLIGTHFRYGQTIALSDYMKGEGKDVTDPYLDVNDFIGKSFTTAPDGKLYQLPDQQF CCCCCCCCHHHCCCEEEEHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEECCCHHH ANLYWFRYDWFTNPDYKAKFKAKYGYDLGVPVNWSAYEDIAEFFTNDIKEINGVKVYGHM CCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC DYGKKDPSLGWRFTDAWLSMAGNGDKGIPNGLPVDEWGIRMEGCRPVGSSVERGGDTNGP CCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCCHHHCCEECCCCCCCCHHHCCCCCCCC AAVYSITKYLDWMKKYAPPQAQGMTFSEAGPVPAQGNVAQQIFWYTAFTADMVKPGLPVV HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE NADGTPKWRMAPSPHGAYWKDGMKLGYQDAGSLTLLKSTPPDRRKAAWLYLQFIVSKSVS ECCCCCCEECCCCCCCCHHHCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC LKKSHVGLTFIRESDIWDKSFTERAPKLGGLIEFYRSPARVQWTPTGNNVPDYPKLAQLW EECCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH WQNIGDASSGAKTPQAAMDALAAAQDSVLERLEKSKVQGDCGPKLNKKESAEFWFNKSAK HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCC DGNIAPQRKLANEKPKGETIDYDTLIKSWPATPPKRAEAK CCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TSAVALFAATMTLSLPARSDDATIQKWIDSEFQPSTLSKEEQLKELQWFAKAAEPFKGM CCHHHHHHHHHEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC EINVVSETITTHEYESKTLAKAFTEITGIKLKHDIIQEGDVVEKLQTQMQSGKNVYDGWI EEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCEEECCCC NDSDLIGTHFRYGQTIALSDYMKGEGKDVTDPYLDVNDFIGKSFTTAPDGKLYQLPDQQF CCCCCCCCHHHCCCEEEEHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCEEECCCHHH ANLYWFRYDWFTNPDYKAKFKAKYGYDLGVPVNWSAYEDIAEFFTNDIKEINGVKVYGHM CCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC DYGKKDPSLGWRFTDAWLSMAGNGDKGIPNGLPVDEWGIRMEGCRPVGSSVERGGDTNGP CCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCCCHHHCCEECCCCCCCCHHHCCCCCCCC AAVYSITKYLDWMKKYAPPQAQGMTFSEAGPVPAQGNVAQQIFWYTAFTADMVKPGLPVV HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE NADGTPKWRMAPSPHGAYWKDGMKLGYQDAGSLTLLKSTPPDRRKAAWLYLQFIVSKSVS ECCCCCCEECCCCCCCCHHHCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC LKKSHVGLTFIRESDIWDKSFTERAPKLGGLIEFYRSPARVQWTPTGNNVPDYPKLAQLW EECCCCCEEEEECCCCCCHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH WQNIGDASSGAKTPQAAMDALAAAQDSVLERLEKSKVQGDCGPKLNKKESAEFWFNKSAK HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCC DGNIAPQRKLANEKPKGETIDYDTLIKSWPATPPKRAEAK CCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA