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The map label for this gene is vanR [H]

Identifier: 146338928

GI number: 146338928

Start: 1993563

End: 1994327

Strand: Direct

Name: vanR [H]

Synonym: BRADO1868

Alternate gene names: 146338928

Gene position: 1993563-1994327 (Clockwise)

Preceding gene: 146338927

Following gene: 146338929

Centisome position: 26.74

GC content: 68.76

Gene sequence:

>765_bases
GTGAATCGAATGGCAGAGCGTGACAATGAACGCTCGATCTCGCAAACCGTCCGCGCACAGCTCACGCTGCGCGATATGAT
CCTCACCGGTGGCTTGCGCCCGGGTGAGCGGATCTCGGAGCTGCAGGCGGTGGAGGCCGCCGGCGTGTCGCGCACACCGG
TGCGCATGGCGCTGGTGCGGCTGGAGGAGGAGGGGCTGCTCGAGGCCATTCCGTCGGGCGGCTTCATGGTGAAGTCTTTC
TCGGAGCGAGACGTGCTCGACTCCATCGAGGTCCGCGGCACGATGGAAGGCCTGGCGGCGCGGCTCGCCGCCGAGCGCGG
CGTTTCCGTGCGCGACACCGAGCCGATGCGCGAATGTCTCGCCCAGATCGACGAGCTGATCGCGCCGCAGGAGATCTCGT
TCGATGCGTTCTCGGCCTATGTCGCGCTGAACGCGCGCTTTCACGCGCTGCTGGCCGAACTGTCGCGCAGCCCGCCGGTG
ATCCGTCAGGTCGACCGCGCCAGCGCGCTGCCCTTCGCCTCGCCGAGCGGATTCGTGATGGCGCAATCGGCGCTGCCGGA
GGCGCGCCACATCCTGGTGGTGGCGCAGGAGCATCACCGCATCGTCATCGATGCGATCGAGAACCGCGAGGGCGCGCGCG
CCGAAGGCATCATGCGCGAGCATGCCCGGCTCGCCGCGCGCAATTTGCGGCTGGCTGTCAAGGCGCGCGGCCCGATGGAC
CTCGTGCCGGCCGCCGCGCTGATCAAGGCGTCGATCTCGAACTGA

Upstream 100 bases:

>100_bases
GCGTTTTCTACAATCTCAACATCGATGCAGGGGCGATGTGGGCACGGCGGATCATCGACCGGATGATCGCGCGTGAAACG
CCGCTGCGCGAAGCGGCGGA

Downstream 100 bases:

>100_bases
CGGAGAGGATCATGCGCTTCCAGGACCATTGGACGACCGCGACGCTGGTGGCGACGCGCGATCTCGCATCCGGGATTCGC
GAGTTCATCCTGCGGCCCGA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNRMAERDNERSISQTVRAQLTLRDMILTGGLRPGERISELQAVEAAGVSRTPVRMALVRLEEEGLLEAIPSGGFMVKSF
SERDVLDSIEVRGTMEGLAARLAAERGVSVRDTEPMRECLAQIDELIAPQEISFDAFSAYVALNARFHALLAELSRSPPV
IRQVDRASALPFASPSGFVMAQSALPEARHILVVAQEHHRIVIDAIENREGARAEGIMREHARLAARNLRLAVKARGPMD
LVPAAALIKASISN

Sequences:

>Translated_254_residues
MNRMAERDNERSISQTVRAQLTLRDMILTGGLRPGERISELQAVEAAGVSRTPVRMALVRLEEEGLLEAIPSGGFMVKSF
SERDVLDSIEVRGTMEGLAARLAAERGVSVRDTEPMRECLAQIDELIAPQEISFDAFSAYVALNARFHALLAELSRSPPV
IRQVDRASALPFASPSGFVMAQSALPEARHILVVAQEHHRIVIDAIENREGARAEGIMREHARLAARNLRLAVKARGPMD
LVPAAALIKASISN
>Mature_254_residues
MNRMAERDNERSISQTVRAQLTLRDMILTGGLRPGERISELQAVEAAGVSRTPVRMALVRLEEEGLLEAIPSGGFMVKSF
SERDVLDSIEVRGTMEGLAARLAAERGVSVRDTEPMRECLAQIDELIAPQEISFDAFSAYVALNARFHALLAELSRSPPV
IRQVDRASALPFASPSGFVMAQSALPEARHILVVAQEHHRIVIDAIENREGARAEGIMREHARLAARNLRLAVKARGPMD
LVPAAALIKASISN

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27748; Mature: 27748

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50949 HTH_GNTR ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRMAERDNERSISQTVRAQLTLRDMILTGGLRPGERISELQAVEAAGVSRTPVRMALVR
CCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
LEEEGLLEAIPSGGFMVKSFSERDVLDSIEVRGTMEGLAARLAAERGVSVRDTEPMRECL
HCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AQIDELIAPQEISFDAFSAYVALNARFHALLAELSRSPPVIRQVDRASALPFASPSGFVM
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEE
AQSALPEARHILVVAQEHHRIVIDAIENREGARAEGIMREHARLAARNLRLAVKARGPMD
ECCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEECCCHH
LVPAAALIKASISN
HHHHHHHHHHHCCC
>Mature Secondary Structure
MNRMAERDNERSISQTVRAQLTLRDMILTGGLRPGERISELQAVEAAGVSRTPVRMALVR
CCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
LEEEGLLEAIPSGGFMVKSFSERDVLDSIEVRGTMEGLAARLAAERGVSVRDTEPMRECL
HCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AQIDELIAPQEISFDAFSAYVALNARFHALLAELSRSPPVIRQVDRASALPFASPSGFVM
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEE
AQSALPEARHILVVAQEHHRIVIDAIENREGARAEGIMREHARLAARNLRLAVKARGPMD
ECCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEECCCHH
LVPAAALIKASISN
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]