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The map label for this gene is yhdI [H]

Identifier: 146338922

GI number: 146338922

Start: 1986115

End: 1988736

Strand: Reverse

Name: yhdI [H]

Synonym: BRADO1862

Alternate gene names: 146338922

Gene position: 1988736-1986115 (Counterclockwise)

Preceding gene: 146338924

Following gene: 146338919

Centisome position: 26.67

GC content: 69.72

Gene sequence:

>2622_bases
ATGCAGCTCTCCGTGCTCCTCGACAGGTCCCGGCCCGAGACGCTGACGGCGCAAATGGTCGATCAGATACGCGATGCGAT
CCGGTCGGCACGGATCGCACCCGGCGCGCGGCTGCCATCGTCGCGGCTCCTGTCCGATCAACTGAACGTTTCACGCAACA
CTATCGTCCGCGCCTATGACCTGCTGATCATGGAGGGGCTGGTGGAGTCGCGGCCCGCATCGGGCGTCTATGTGACGGAG
CGGCTGCCTCCGGCCGCGCGCGAGCCCGGCAACGTGACCCGGCTTCCCGCCCGCACCCTGATGCCGATGCCGCTGCGTGC
TGCACGCGGCCCGGCTTCATCGCACCCGCCGCAGAAGCGTCTGTTGCACGATTTCTGTCCCGGCCGTCCAGCGGCCGAGC
TGTTTCCGATCAAGGCCTGGCGGCGGCTGCTCACGCATCATCTCCCGCACGGCGGAAGCGTCGGCCTCACGACCGACGGC
GACGTCGCGGGCGTGCCGGCGCTGCGCACAGCGATCGCTCAGCATCTCGCCGCAGCGCGCGGCATAGCCGCCGATCCAAG
CCGCATCGTGATCGTCTCCGGCGTCCAGGACGCCGTGACGTTGATGAGCCGCCTGTTCCTCGCGCGCGGCCAGCTCGCGG
TGGTCGAGGACCCCGGCGCCGAGGGCCCCGCGCTCTCCTTCGAGGCGGCCGGCGCGGAGCTCGGCTTCGTCGGCGTCGAC
CAGGACGGGCTCCTGCCCGACGAGCTGCCGCAGCGGCCCGCGTCGCTGCTCTACGCCACCCCCGCACATCAGTTTCCGAC
CGGCGCGACCTTGTCGGCGCGACGCCGCGCCGAACTGATCGACTGGGCGCGGCGCTTCGGCTGCTATTTGATCGAAGACG
ATTACGATTGCGATATCCGCTATCACGGCTCGCACCTGCCGCCGCTGGCCGCGCTCGCGCCGGACTGCACCGTTCATGTC
GGCAGCTTCACCGCCTCGCTCGGCGCCGGCCTGCGGCTTGGCTACATGGTTGTGCCCGAGCCGATCGCGGCAGCCGTGAT
CGCCGAGAAGACGCTGCTCACCCATGGCAGCTCATGGCTGGAGCAGGCGACGCTCGCCGACTTCATGCACAGCGGCGCTT
ACGCCAATCACCTGCTGCGGGTGCGTGCGCATTATCGCGACAGCCGCGACGCGCTGATCGCAGCGCTGCGCGGCCATTTC
GGCGACGTCAGCGTGGATGGCGAGGCCGGCGGGCTGCACCTGATCTGGCACCTGCCGCCCGGCATTCCCGATGCCGTCAC
CGTGGAGGCACTGGCCCGGCGCGCCCGGATCGGCGTCTATTCGCTGGGCTCGGCGCGCGTCCGCTTCCGGCAGCGCGGCG
CGCTCACCAGCCGCGCGCTCATGCTCGGCTATGCCGCGCTGTCGCCGCGGCAGATCGAGAAAGGCATCGCGCGGCTGTCC
GACGTGATCGATGACGCGATCGACGATCCCGCCACCGACATGAGCGCGCTGTTCGCCGATCAGTTCGCCCCGCCGCGCGT
CCCTGCGCCGGAGCCGAAGCTGGCCCCACGACATCGCCAGCAACCGGCTCTACGCCGCCCGAGGGAGCCTCGGGCAATGT
CGACGCCGAGTTTCGCCCGCCAAGGTGTTGCGCCCATGCCCGTGCTGACGTCAATCTATCGCTACCCGATCAAGGGGCTC
AGCGCCCAGCCGCTGTCCTCCGTCATGCTGGAGGCGAAGAAGCCGTTCCCGCATGACCGCGTATTCGCGCTGGTGCGGCC
GGGCGCGCCCTATGACCTCGCGCAGCCGCGCTGGGGCAAGAAGGGCCTGTTCGTCATGCTGATGCTCGAGGAAACGTTGG
CGCGGGTACGGACGTCGCTCGACGTGGAGACCTCGCGGCTCGTCGTCACGCAGGACAATCACGCGCTGATCACCGCCGAC
CTGAACGATGCCGGGGGGCGCTCGGCGCTGGAGCAACTGATCTGGCAGCTGGTGCCGCAGCTGCGCGGGGCGCCGACCCT
GGTGCGCACGCGCGACGGCCATTTCATGGACAAGCCGGACAACGTGATCTCGCTGATCAATCTCGCGACGTTACGCAGCC
TCGAGAGCCAGTGGGGCATCAGCATCGATCCGCTGCGCTTTCGCGCCAATCTTTATATCGATGGCGCGCGGCCGTGGGAG
GAGTTCGACTGGGTCGGCCACGACATCCGAATTGGCGACGCGCTGTTCCGCGTCGATCGCCGCAACGGCCGCTGCGGCGC
CACCAATGTCGATCCGCACACCGGCCGGCGCGATCTCGACATTCCCGGGTCCCTGCGCGCGGCGTTCGGCCACAAGGAGC
TCGGCGTCTACCTGATCGCGCGCGAGGGCGGCGAGGTCACGGTCGGCCAGCAGGTCACGCCGCCCGCGGTGCCGCAATCG
GTCTCGTATCACTCGCGGCTGGTGCCGCCGAGCGGGACGCAGCCGTTCATCTGCCGTGGCTGCTACTACATCTACGATCC
GGCCGCAGGCCAGCCCGAGCAGGGCGTGGCGCCGGGCACGGCCTTCGCGGCGATTCCGCTGTCATGGCGCTGTCCGGATT
GCGGCACCGACAAGTCGACGTTCCGCCCGCATCTGCCGGGGACGCGCAGCGCTGTGCCGTGA

Upstream 100 bases:

>100_bases
CGAAAAATCGGCTGACAAATGCGCAAAAGGCGCGACAATCGCACAACTGGACTCATCAGTTGATGTTCTCCTTTCACGCA
AGGTCCGCCCGACACGCGCC

Downstream 100 bases:

>100_bases
CCTGCGCATTTCCGGTCACGGCACCTGCGTCAGGACTGATTGATCCGGATCGACATCACCCGGCCGCCCTTGAGCTCGAA
CGAGAACGGCTGCGGCGGAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 873; Mature: 873

Protein sequence:

>873_residues
MQLSVLLDRSRPETLTAQMVDQIRDAIRSARIAPGARLPSSRLLSDQLNVSRNTIVRAYDLLIMEGLVESRPASGVYVTE
RLPPAAREPGNVTRLPARTLMPMPLRAARGPASSHPPQKRLLHDFCPGRPAAELFPIKAWRRLLTHHLPHGGSVGLTTDG
DVAGVPALRTAIAQHLAAARGIAADPSRIVIVSGVQDAVTLMSRLFLARGQLAVVEDPGAEGPALSFEAAGAELGFVGVD
QDGLLPDELPQRPASLLYATPAHQFPTGATLSARRRAELIDWARRFGCYLIEDDYDCDIRYHGSHLPPLAALAPDCTVHV
GSFTASLGAGLRLGYMVVPEPIAAAVIAEKTLLTHGSSWLEQATLADFMHSGAYANHLLRVRAHYRDSRDALIAALRGHF
GDVSVDGEAGGLHLIWHLPPGIPDAVTVEALARRARIGVYSLGSARVRFRQRGALTSRALMLGYAALSPRQIEKGIARLS
DVIDDAIDDPATDMSALFADQFAPPRVPAPEPKLAPRHRQQPALRRPREPRAMSTPSFARQGVAPMPVLTSIYRYPIKGL
SAQPLSSVMLEAKKPFPHDRVFALVRPGAPYDLAQPRWGKKGLFVMLMLEETLARVRTSLDVETSRLVVTQDNHALITAD
LNDAGGRSALEQLIWQLVPQLRGAPTLVRTRDGHFMDKPDNVISLINLATLRSLESQWGISIDPLRFRANLYIDGARPWE
EFDWVGHDIRIGDALFRVDRRNGRCGATNVDPHTGRRDLDIPGSLRAAFGHKELGVYLIAREGGEVTVGQQVTPPAVPQS
VSYHSRLVPPSGTQPFICRGCYYIYDPAAGQPEQGVAPGTAFAAIPLSWRCPDCGTDKSTFRPHLPGTRSAVP

Sequences:

>Translated_873_residues
MQLSVLLDRSRPETLTAQMVDQIRDAIRSARIAPGARLPSSRLLSDQLNVSRNTIVRAYDLLIMEGLVESRPASGVYVTE
RLPPAAREPGNVTRLPARTLMPMPLRAARGPASSHPPQKRLLHDFCPGRPAAELFPIKAWRRLLTHHLPHGGSVGLTTDG
DVAGVPALRTAIAQHLAAARGIAADPSRIVIVSGVQDAVTLMSRLFLARGQLAVVEDPGAEGPALSFEAAGAELGFVGVD
QDGLLPDELPQRPASLLYATPAHQFPTGATLSARRRAELIDWARRFGCYLIEDDYDCDIRYHGSHLPPLAALAPDCTVHV
GSFTASLGAGLRLGYMVVPEPIAAAVIAEKTLLTHGSSWLEQATLADFMHSGAYANHLLRVRAHYRDSRDALIAALRGHF
GDVSVDGEAGGLHLIWHLPPGIPDAVTVEALARRARIGVYSLGSARVRFRQRGALTSRALMLGYAALSPRQIEKGIARLS
DVIDDAIDDPATDMSALFADQFAPPRVPAPEPKLAPRHRQQPALRRPREPRAMSTPSFARQGVAPMPVLTSIYRYPIKGL
SAQPLSSVMLEAKKPFPHDRVFALVRPGAPYDLAQPRWGKKGLFVMLMLEETLARVRTSLDVETSRLVVTQDNHALITAD
LNDAGGRSALEQLIWQLVPQLRGAPTLVRTRDGHFMDKPDNVISLINLATLRSLESQWGISIDPLRFRANLYIDGARPWE
EFDWVGHDIRIGDALFRVDRRNGRCGATNVDPHTGRRDLDIPGSLRAAFGHKELGVYLIAREGGEVTVGQQVTPPAVPQS
VSYHSRLVPPSGTQPFICRGCYYIYDPAAGQPEQGVAPGTAFAAIPLSWRCPDCGTDKSTFRPHLPGTRSAVP
>Mature_873_residues
MQLSVLLDRSRPETLTAQMVDQIRDAIRSARIAPGARLPSSRLLSDQLNVSRNTIVRAYDLLIMEGLVESRPASGVYVTE
RLPPAAREPGNVTRLPARTLMPMPLRAARGPASSHPPQKRLLHDFCPGRPAAELFPIKAWRRLLTHHLPHGGSVGLTTDG
DVAGVPALRTAIAQHLAAARGIAADPSRIVIVSGVQDAVTLMSRLFLARGQLAVVEDPGAEGPALSFEAAGAELGFVGVD
QDGLLPDELPQRPASLLYATPAHQFPTGATLSARRRAELIDWARRFGCYLIEDDYDCDIRYHGSHLPPLAALAPDCTVHV
GSFTASLGAGLRLGYMVVPEPIAAAVIAEKTLLTHGSSWLEQATLADFMHSGAYANHLLRVRAHYRDSRDALIAALRGHF
GDVSVDGEAGGLHLIWHLPPGIPDAVTVEALARRARIGVYSLGSARVRFRQRGALTSRALMLGYAALSPRQIEKGIARLS
DVIDDAIDDPATDMSALFADQFAPPRVPAPEPKLAPRHRQQPALRRPREPRAMSTPSFARQGVAPMPVLTSIYRYPIKGL
SAQPLSSVMLEAKKPFPHDRVFALVRPGAPYDLAQPRWGKKGLFVMLMLEETLARVRTSLDVETSRLVVTQDNHALITAD
LNDAGGRSALEQLIWQLVPQLRGAPTLVRTRDGHFMDKPDNVISLINLATLRSLESQWGISIDPLRFRANLYIDGARPWE
EFDWVGHDIRIGDALFRVDRRNGRCGATNVDPHTGRRDLDIPGSLRAAFGHKELGVYLIAREGGEVTVGQQVTPPAVPQS
VSYHSRLVPPSGTQPFICRGCYYIYDPAAGQPEQGVAPGTAFAAIPLSWRCPDCGTDKSTFRPHLPGTRSAVP

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=440, Percent_Identity=23.8636363636364, Blast_Score=97, Evalue=8e-20,
Organism=Homo sapiens, GI33469970, Length=440, Percent_Identity=23.8636363636364, Blast_Score=97, Evalue=8e-20,
Organism=Escherichia coli, GI1787710, Length=454, Percent_Identity=27.9735682819383, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1790797, Length=433, Percent_Identity=24.2494226327945, Blast_Score=78, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 94927; Mature: 94927

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS50949 HTH_GNTR ; PS00202 RUBREDOXIN ; PS50903 RUBREDOXIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLSVLLDRSRPETLTAQMVDQIRDAIRSARIAPGARLPSSRLLSDQLNVSRNTIVRAYD
CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
LLIMEGLVESRPASGVYVTERLPPAAREPGNVTRLPARTLMPMPLRAARGPASSHPPQKR
HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEECCHHHCCCCCCHHCCCCCCCCCHHHH
LLHDFCPGRPAAELFPIKAWRRLLTHHLPHGGSVGLTTDGDVAGVPALRTAIAQHLAAAR
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
GIAADPSRIVIVSGVQDAVTLMSRLFLARGQLAVVEDPGAEGPALSFEAAGAELGFVGVD
CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCEEEEEECC
QDGLLPDELPQRPASLLYATPAHQFPTGATLSARRRAELIDWARRFGCYLIEDDYDCDIR
CCCCCCHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEE
YHGSHLPPLAALAPDCTVHVGSFTASLGAGLRLGYMVVPEPIAAAVIAEKTLLTHGSSWL
ECCCCCCCHHHHCCCCEEEECCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHH
EQATLADFMHSGAYANHLLRVRAHYRDSRDALIAALRGHFGDVSVDGEAGGLHLIWHLPP
HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCCCCEEEEEECCC
GIPDAVTVEALARRARIGVYSLGSARVRFRQRGALTSRALMLGYAALSPRQIEKGIARLS
CCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHH
DVIDDAIDDPATDMSALFADQFAPPRVPAPEPKLAPRHRQQPALRRPREPRAMSTPSFAR
HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHH
QGVAPMPVLTSIYRYPIKGLSAQPLSSVMLEAKKPFPHDRVFALVRPGAPYDLAQPRWGK
CCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCC
KGLFVMLMLEETLARVRTSLDVETSRLVVTQDNHALITADLNDAGGRSALEQLIWQLVPQ
CCEEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHH
LRGAPTLVRTRDGHFMDKPDNVISLINLATLRSLESQWGISIDPLRFRANLYIDGARPWE
HCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHH
EFDWVGHDIRIGDALFRVDRRNGRCGATNVDPHTGRRDLDIPGSLRAAFGHKELGVYLIA
HHHCCCCEEEECHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEE
REGGEVTVGQQVTPPAVPQSVSYHSRLVPPSGTQPFICRGCYYIYDPAAGQPEQGVAPGT
ECCCCEEECCCCCCCCCCCCCCHHCEECCCCCCCCEEEECEEEEECCCCCCCCCCCCCCC
AFAAIPLSWRCPDCGTDKSTFRPHLPGTRSAVP
EEEEEECEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQLSVLLDRSRPETLTAQMVDQIRDAIRSARIAPGARLPSSRLLSDQLNVSRNTIVRAYD
CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
LLIMEGLVESRPASGVYVTERLPPAAREPGNVTRLPARTLMPMPLRAARGPASSHPPQKR
HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEECCHHHCCCCCCHHCCCCCCCCCHHHH
LLHDFCPGRPAAELFPIKAWRRLLTHHLPHGGSVGLTTDGDVAGVPALRTAIAQHLAAAR
HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
GIAADPSRIVIVSGVQDAVTLMSRLFLARGQLAVVEDPGAEGPALSFEAAGAELGFVGVD
CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCEEEEEECC
QDGLLPDELPQRPASLLYATPAHQFPTGATLSARRRAELIDWARRFGCYLIEDDYDCDIR
CCCCCCHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEE
YHGSHLPPLAALAPDCTVHVGSFTASLGAGLRLGYMVVPEPIAAAVIAEKTLLTHGSSWL
ECCCCCCCHHHHCCCCEEEECCHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCHHHH
EQATLADFMHSGAYANHLLRVRAHYRDSRDALIAALRGHFGDVSVDGEAGGLHLIWHLPP
HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCCCCEEEEEECCC
GIPDAVTVEALARRARIGVYSLGSARVRFRQRGALTSRALMLGYAALSPRQIEKGIARLS
CCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHH
DVIDDAIDDPATDMSALFADQFAPPRVPAPEPKLAPRHRQQPALRRPREPRAMSTPSFAR
HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHH
QGVAPMPVLTSIYRYPIKGLSAQPLSSVMLEAKKPFPHDRVFALVRPGAPYDLAQPRWGK
CCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCC
KGLFVMLMLEETLARVRTSLDVETSRLVVTQDNHALITADLNDAGGRSALEQLIWQLVPQ
CCEEEEEHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHH
LRGAPTLVRTRDGHFMDKPDNVISLINLATLRSLESQWGISIDPLRFRANLYIDGARPWE
HCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHH
EFDWVGHDIRIGDALFRVDRRNGRCGATNVDPHTGRRDLDIPGSLRAAFGHKELGVYLIA
HHHCCCCEEEECHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEE
REGGEVTVGQQVTPPAVPQSVSYHSRLVPPSGTQPFICRGCYYIYDPAAGQPEQGVAPGT
ECCCCEEECCCCCCCCCCCCCCHHCEECCCCCCCCEEEECEEEEECCCCCCCCCCCCCCC
AFAAIPLSWRCPDCGTDKSTFRPHLPGTRSAVP
EEEEEECEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]