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The map label for this gene is cbbR [H]

Identifier: 146338721

GI number: 146338721

Start: 1771367

End: 1772287

Strand: Reverse

Name: cbbR [H]

Synonym: BRADO1654

Alternate gene names: 146338721

Gene position: 1772287-1771367 (Counterclockwise)

Preceding gene: 146338731

Following gene: 146338704

Centisome position: 23.77

GC content: 67.32

Gene sequence:

>921_bases
ATGAGCCGTCATTTCGCGCGCGACCTCACCATCCGGCAGCTTCGGGCGCTCGTGGCCGTGCAGAACTCGGGTTCGGTGAC
GTCCGCGGCCGGCCGCCTGAACCTCACGCAGCCTGCCGTCACGCTGCAGATCCGCAATCTCCAGGAGCTCGCCGGGCTGC
CGCTGATCCAGCGCACCACCGACGGCATGATCCTGACGGAAGCAGGCCGCAGCGTGCTGGCGCTCGCCGAGCGAGTCGAG
GCCGCGCTGCAGGATTGCGAGCAGGCGCTGGACATTCTTGCCGGGCGCAGCGGCGGCCGGGTGGCAATCGGCGCGGTCTC
GACCGCAAAATATTTCGTGCCGTTTGCGATTGCGGAATTTTCGCGGCGGTTTCCGAAGATCGACGTGACATTGCGGATCG
GCAACCGCGATAGCCTGCGCGAGGCCTTGCGCGGCTACGATCTCGACATCGCCATCATGGGCCGGCCGCCGGCCGACATT
CCCGTCGACATGCGCCCGTTCGGCAAGCATCCGCACATCATCATCGCGCCCGCCAACCACAAATTCGCGCGCCGCAAGCG
CATCGCGGCGGAGGACCTCGCCGAAGAGGTGTTCATCACCCGCGAGCCGGGCTCGGGAACCCGGCTGCTGATGGAGTCCT
TCTTCGACAGGCATGGGCTGCAGCCGAAGACCAGCATGGAGATGGACAGCAACGAGACCATCAAGCAGGCGGTCATCGCC
GGCCTCGGCATCGCCTTCATTTCGCAGCACACGGTGGCGCATGAGCTCGGCGAGGGGCGGCTGGTGACGCTGAAGGTGGT
GGGCCTGCCGATCATCCGGCAATGGCACGCGGTGCGGCGCGCCGACAAGCTGCTGCTGCCGCCGGCGCAGGCGATGCTGG
ACTTTCTGGGCAAGGAGGGCGCGCGGTTTCTGCCCCGCTGA

Upstream 100 bases:

>100_bases
CCGCGCTGCTATCAACACTCGATTTGCGTGATTAGGGAAATTTCAATATCTTTGGATTGACCAAAGTTTTCCTTATGCGA
TCGATCTCACCGAGGGTTCC

Downstream 100 bases:

>100_bases
GCGCGACACCCGAAGCCGTGACGGTGTCGCCTCTCGCATCGCGGCGCCCTACCAATCGATCTCGAATCGACAGGCGGAGG
CGCCGGTGGCTTCGCAACCG

Product: RuBisCO operon transcriptional regulatory protein

Products: NA

Alternate protein names: RuBisCO operon transcriptional regulator [H]

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSRHFARDLTIRQLRALVAVQNSGSVTSAAGRLNLTQPAVTLQIRNLQELAGLPLIQRTTDGMILTEAGRSVLALAERVE
AALQDCEQALDILAGRSGGRVAIGAVSTAKYFVPFAIAEFSRRFPKIDVTLRIGNRDSLREALRGYDLDIAIMGRPPADI
PVDMRPFGKHPHIIIAPANHKFARRKRIAAEDLAEEVFITREPGSGTRLLMESFFDRHGLQPKTSMEMDSNETIKQAVIA
GLGIAFISQHTVAHELGEGRLVTLKVVGLPIIRQWHAVRRADKLLLPPAQAMLDFLGKEGARFLPR

Sequences:

>Translated_306_residues
MSRHFARDLTIRQLRALVAVQNSGSVTSAAGRLNLTQPAVTLQIRNLQELAGLPLIQRTTDGMILTEAGRSVLALAERVE
AALQDCEQALDILAGRSGGRVAIGAVSTAKYFVPFAIAEFSRRFPKIDVTLRIGNRDSLREALRGYDLDIAIMGRPPADI
PVDMRPFGKHPHIIIAPANHKFARRKRIAAEDLAEEVFITREPGSGTRLLMESFFDRHGLQPKTSMEMDSNETIKQAVIA
GLGIAFISQHTVAHELGEGRLVTLKVVGLPIIRQWHAVRRADKLLLPPAQAMLDFLGKEGARFLPR
>Mature_305_residues
SRHFARDLTIRQLRALVAVQNSGSVTSAAGRLNLTQPAVTLQIRNLQELAGLPLIQRTTDGMILTEAGRSVLALAERVEA
ALQDCEQALDILAGRSGGRVAIGAVSTAKYFVPFAIAEFSRRFPKIDVTLRIGNRDSLREALRGYDLDIAIMGRPPADIP
VDMRPFGKHPHIIIAPANHKFARRKRIAAEDLAEEVFITREPGSGTRLLMESFFDRHGLQPKTSMEMDSNETIKQAVIAG
LGIAFISQHTVAHELGEGRLVTLKVVGLPIIRQWHAVRRADKLLLPPAQAMLDFLGKEGARFLPR

Specific function: Transcriptional activator for the cbb operon (cbbLSXFP) for RuBisCO and other Calvin cycle genes. Binds specifically to two binding sites in the cbbR-cbbL intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=268, Percent_Identity=30.2238805970149, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=25.5102040816327, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI145693105, Length=292, Percent_Identity=25, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787806, Length=270, Percent_Identity=28.1481481481481, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI157672245, Length=220, Percent_Identity=26.8181818181818, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787879, Length=262, Percent_Identity=26.3358778625954, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082132, Length=262, Percent_Identity=24.4274809160305, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790262, Length=266, Percent_Identity=27.0676691729323, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788887, Length=268, Percent_Identity=25, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=25.7028112449799, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790399, Length=264, Percent_Identity=26.1363636363636, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=28.1879194630872, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788296, Length=233, Percent_Identity=24.8927038626609, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367136, Length=253, Percent_Identity=24.901185770751, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=148, Percent_Identity=30.4054054054054, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789506, Length=285, Percent_Identity=23.5087719298246, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789204, Length=277, Percent_Identity=23.826714801444, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=268, Percent_Identity=24.2537313432836, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787589, Length=265, Percent_Identity=27.1698113207547, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33669; Mature: 33537

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRHFARDLTIRQLRALVAVQNSGSVTSAAGRLNLTQPAVTLQIRNLQELAGLPLIQRTT
CCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHCCCEEEECC
DGMILTEAGRSVLALAERVEAALQDCEQALDILAGRSGGRVAIGAVSTAKYFVPFAIAEF
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
SRRFPKIDVTLRIGNRDSLREALRGYDLDIAIMGRPPADIPVDMRPFGKHPHIIIAPANH
HHHCCCEEEEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
KFARRKRIAAEDLAEEVFITREPGSGTRLLMESFFDRHGLQPKTSMEMDSNETIKQAVIA
HHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
GLGIAFISQHTVAHELGEGRLVTLKVVGLPIIRQWHAVRRADKLLLPPAQAMLDFLGKEG
HHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
ARFLPR
CCCCCC
>Mature Secondary Structure 
SRHFARDLTIRQLRALVAVQNSGSVTSAAGRLNLTQPAVTLQIRNLQELAGLPLIQRTT
CCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEECCHHHHHCCCEEEECC
DGMILTEAGRSVLALAERVEAALQDCEQALDILAGRSGGRVAIGAVSTAKYFVPFAIAEF
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHH
SRRFPKIDVTLRIGNRDSLREALRGYDLDIAIMGRPPADIPVDMRPFGKHPHIIIAPANH
HHHCCCEEEEEEECCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC
KFARRKRIAAEDLAEEVFITREPGSGTRLLMESFFDRHGLQPKTSMEMDSNETIKQAVIA
HHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
GLGIAFISQHTVAHELGEGRLVTLKVVGLPIIRQWHAVRRADKLLLPPAQAMLDFLGKEG
HHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
ARFLPR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407781; 1900916 [H]