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The map label for this gene is BrbphP [H]

Identifier: 146338696

GI number: 146338696

Start: 1742399

End: 1744573

Strand: Reverse

Name: BrbphP [H]

Synonym: BRADO1628

Alternate gene names: 146338696

Gene position: 1744573-1742399 (Counterclockwise)

Preceding gene: 146338697

Following gene: 146338695

Centisome position: 23.4

GC content: 68.0

Gene sequence:

>2175_bases
TTGCCCGTTCCGCTGACGACGCCAGCCTTCGGCCACGCTACTCTTGCGAATTGCGAGCGCGAACAAATTCATCTCGCAGG
CTCGATTCAGCCGCATGGCATTCTCCTGGCAGTGAAGGAGCCGGACAATGTCGTCATCCAGGCCAGCATCAATGCAGCCG
AGTTTCTCAACACGAACTCGGTGGTCGGGCGGCCGTTGCGCGATCTCGGTGGCGATCTGGCGCTGCAGATCCTGCCGCAT
CTCAATGGTCCGCTGCATCTGGCGCCGATGACCCTGCGCTGCACCGTCGGCTCGCCGCCACGCCGGGTGGATTGCACGGT
CCATCGCCCCTCGAATGGCGGACTGATCGTCGAGTTGGAGCCGGCGACCAAGACCACCAACGTCGCGCCCGCACTCGACG
GCGCCTTCCACCGCATCACCTCGTCCTCGTCGCTCATCGGCCTGTGCGACGAGACGGCGACGATCTTCCGGGAGATCACC
GGCTACGATCGCGTCATGGTCTATCGCTTCGACGAAGAAGGGCACGGCGAGGTGCTGTCGGAGCGGCGGCGGCCGGACCT
CGAGGCCTTCCTCGGTAACCGCTACCCGGCCTCGGACATTCCGCAGATCGCGCGGCGGCTCTATGAGCGCAACCGCGTCC
GCCTGCTCGTCGATGTCAACTACACGCCGGTGCCACTGCAGCCGCGGATATCCCCGCTCAACGGCCGCGACCTCGACATG
TCCCTGAGTTGCCTGCGCAGCATGTCGCCGATCCATCAGAAATATCTGCAGAACATGGGCGTCGGCGCGACGCTGGTGTG
CTCGCTGATGGTCAGCGGCCGTCTCTGGGGCCTGATCGCCTGCCACCATTACGAGCCGCGCTTCGTGCCGTTCGACATCC
GCGCCGCCGGCGAGGCGCTGGCCGAGACCTGCGCGATCCGCATCGCGGCGCTGGAGAGCTTTGCCCAGAGCCAGTCGGAG
CTGGTGGTGCGACGGCTGGAGCAGCGGCTGGTCGAGGCGGTGTCGCGCGACGGCGAGTGGCAGGCGGCCTTGTTTGATGG
CTCGCAATCGCTGCTGCAGCCGCTCGGCGCCAGCGGCGCGGCCCTGCTGTTCGAGGGCCAGGTGATGACCGCCGGCGACG
TGCCGTCGACGCAACGCATCCGCGACCTCGCCACCTGGCTCGATCGACGCCGCAAGGCGCCGGACGCGCCGCCGCAGGGC
CTGACGGTGACGGCCTCGCTGACGCTCGACGACCCGTCCTTCGCCGACATCCGCTCGATCGCCTCGGGCCTCATCGCCGC
GCCGCTGTCGGCGAGCGAGGGCGAGTATCTGTTGTGGTTCCGGCCGGAGCAGGTGCGGACGGTGACCTGGGGCGGCGATC
CGCTCAAGGCGGTCATTATCGGCGACGATCCGTCGGATCTGTCGCCGCGGCGCTCCTTCGCGCAATGGCATCAGCTCGTC
GAGGGCAAGTCCGAGCCGTGGTCGCCGGCGGAGCTCGCCTCCGCGCGGCTGGTCAGCGAGACCGTCGCGGATGTCGCGCT
GCAGCTGCGCTCAGTGCGGATGGTGATTGCTCAGGATCAGCTCGCGACCATCAGCGCGCAGGTGCTGCGCTCGGAACAAC
CGGTCATCATCGCCGACGTCGAGGGCCGGATCCTGCTGCTGAACGAGGCGTTCGAGCAGCAGCTGCGGGCGTCGCATCCG
CACATCCCGCACCTGCGCGACCTCGGCGCCTATTGCACGGCGCCCGCGGAGTTCCGCGCCAATCTCGACGACCTCATGCG
CAACAAGCGCAGCTGGCGCGGCGAGCTGACCTTGACCGGCGGCGCCACACCGCAGCGGCCCCTGATGGTGCGCGCCGATC
CGGTGATCGCACCGCACGACCGCGTGCTCGGCTTCGTGCTGATCTTCTCAGATCTCACCGAGCGCAAGACGGCAGAGGCC
GCCCGCGCCCGTTTCCAGGAGGAGATCGACGGCGCCCGCCGCCCAAGCCTGCGGCTCGATCAGAGCGCCAGCCTGATCTA
CAAAGAACTCGCCGCGTCGACCGTCGAGAACGCCCAGCTCGCCGCGCTGGAAGTGACGCACGGAGCCGAGGCCGGCAGCA
TGCCGGAAATGCTGGAGAGCATCCGCAATTCAACCGCGCGGACGCTTGGGATTCTCGAGCACCTGGTGTGGTATCGCTCG
CAGAGCGAGGAGTGA

Upstream 100 bases:

>100_bases
AATTCTGGGCCTGAGCCGCCAGAGCCTTTACGCCAAGCTTGATCGGTATAATCTGAGCCAACTCGAAGAAAACGGCGAGG
AAACCGAAAAGGGGAGCTAG

Downstream 100 bases:

>100_bases
GATGGGCGTTTCGCCCGCCCGTCCTGCAGTCTGTAGGGTGGGCAAAGGCGCGAGGCACACGCCTCGTTTGGGCCCCGCTG
CTGCGCGCCGTGCCCACCAT

Product: bacteriophytochrome

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 724; Mature: 723

Protein sequence:

>724_residues
MPVPLTTPAFGHATLANCEREQIHLAGSIQPHGILLAVKEPDNVVIQASINAAEFLNTNSVVGRPLRDLGGDLALQILPH
LNGPLHLAPMTLRCTVGSPPRRVDCTVHRPSNGGLIVELEPATKTTNVAPALDGAFHRITSSSSLIGLCDETATIFREIT
GYDRVMVYRFDEEGHGEVLSERRRPDLEAFLGNRYPASDIPQIARRLYERNRVRLLVDVNYTPVPLQPRISPLNGRDLDM
SLSCLRSMSPIHQKYLQNMGVGATLVCSLMVSGRLWGLIACHHYEPRFVPFDIRAAGEALAETCAIRIAALESFAQSQSE
LVVRRLEQRLVEAVSRDGEWQAALFDGSQSLLQPLGASGAALLFEGQVMTAGDVPSTQRIRDLATWLDRRRKAPDAPPQG
LTVTASLTLDDPSFADIRSIASGLIAAPLSASEGEYLLWFRPEQVRTVTWGGDPLKAVIIGDDPSDLSPRRSFAQWHQLV
EGKSEPWSPAELASARLVSETVADVALQLRSVRMVIAQDQLATISAQVLRSEQPVIIADVEGRILLLNEAFEQQLRASHP
HIPHLRDLGAYCTAPAEFRANLDDLMRNKRSWRGELTLTGGATPQRPLMVRADPVIAPHDRVLGFVLIFSDLTERKTAEA
ARARFQEEIDGARRPSLRLDQSASLIYKELAASTVENAQLAALEVTHGAEAGSMPEMLESIRNSTARTLGILEHLVWYRS
QSEE

Sequences:

>Translated_724_residues
MPVPLTTPAFGHATLANCEREQIHLAGSIQPHGILLAVKEPDNVVIQASINAAEFLNTNSVVGRPLRDLGGDLALQILPH
LNGPLHLAPMTLRCTVGSPPRRVDCTVHRPSNGGLIVELEPATKTTNVAPALDGAFHRITSSSSLIGLCDETATIFREIT
GYDRVMVYRFDEEGHGEVLSERRRPDLEAFLGNRYPASDIPQIARRLYERNRVRLLVDVNYTPVPLQPRISPLNGRDLDM
SLSCLRSMSPIHQKYLQNMGVGATLVCSLMVSGRLWGLIACHHYEPRFVPFDIRAAGEALAETCAIRIAALESFAQSQSE
LVVRRLEQRLVEAVSRDGEWQAALFDGSQSLLQPLGASGAALLFEGQVMTAGDVPSTQRIRDLATWLDRRRKAPDAPPQG
LTVTASLTLDDPSFADIRSIASGLIAAPLSASEGEYLLWFRPEQVRTVTWGGDPLKAVIIGDDPSDLSPRRSFAQWHQLV
EGKSEPWSPAELASARLVSETVADVALQLRSVRMVIAQDQLATISAQVLRSEQPVIIADVEGRILLLNEAFEQQLRASHP
HIPHLRDLGAYCTAPAEFRANLDDLMRNKRSWRGELTLTGGATPQRPLMVRADPVIAPHDRVLGFVLIFSDLTERKTAEA
ARARFQEEIDGARRPSLRLDQSASLIYKELAASTVENAQLAALEVTHGAEAGSMPEMLESIRNSTARTLGILEHLVWYRS
QSEE
>Mature_723_residues
PVPLTTPAFGHATLANCEREQIHLAGSIQPHGILLAVKEPDNVVIQASINAAEFLNTNSVVGRPLRDLGGDLALQILPHL
NGPLHLAPMTLRCTVGSPPRRVDCTVHRPSNGGLIVELEPATKTTNVAPALDGAFHRITSSSSLIGLCDETATIFREITG
YDRVMVYRFDEEGHGEVLSERRRPDLEAFLGNRYPASDIPQIARRLYERNRVRLLVDVNYTPVPLQPRISPLNGRDLDMS
LSCLRSMSPIHQKYLQNMGVGATLVCSLMVSGRLWGLIACHHYEPRFVPFDIRAAGEALAETCAIRIAALESFAQSQSEL
VVRRLEQRLVEAVSRDGEWQAALFDGSQSLLQPLGASGAALLFEGQVMTAGDVPSTQRIRDLATWLDRRRKAPDAPPQGL
TVTASLTLDDPSFADIRSIASGLIAAPLSASEGEYLLWFRPEQVRTVTWGGDPLKAVIIGDDPSDLSPRRSFAQWHQLVE
GKSEPWSPAELASARLVSETVADVALQLRSVRMVIAQDQLATISAQVLRSEQPVIIADVEGRILLLNEAFEQQLRASHPH
IPHLRDLGAYCTAPAEFRANLDDLMRNKRSWRGELTLTGGATPQRPLMVRADPVIAPHDRVLGFVLIFSDLTERKTAEAA
RARFQEEIDGARRPSLRLDQSASLIYKELAASTVENAQLAALEVTHGAEAGSMPEMLESIRNSTARTLGILEHLVWYRSQ
SEE

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 79528; Mature: 79396

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVPLTTPAFGHATLANCEREQIHLAGSIQPHGILLAVKEPDNVVIQASINAAEFLNTNS
CCCCCCCCCCCCHHHHCCCHHEEEEECCCCCCEEEEEEECCCCEEEEEECCHHHHCCCCC
VVGRPLRDLGGDLALQILPHLNGPLHLAPMTLRCTVGSPPRRVDCTVHRPSNGGLIVELE
CCCCCHHHCCCCEEEHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEC
PATKTTNVAPALDGAFHRITSSSSLIGLCDETATIFREITGYDRVMVYRFDEEGHGEVLS
CCCCCCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
ERRRPDLEAFLGNRYPASDIPQIARRLYERNRVRLLVDVNYTPVPLQPRISPLNGRDLDM
HHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH
SLSCLRSMSPIHQKYLQNMGVGATLVCSLMVSGRLWGLIACHHYEPRFVPFDIRAAGEAL
HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEHHHHHHHH
AETCAIRIAALESFAQSQSELVVRRLEQRLVEAVSRDGEWQAALFDGSQSLLQPLGASGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCC
ALLFEGQVMTAGDVPSTQRIRDLATWLDRRRKAPDAPPQGLTVTASLTLDDPSFADIRSI
EEEEECEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHH
ASGLIAAPLSASEGEYLLWFRPEQVRTVTWGGDPLKAVIIGDDPSDLSPRRSFAQWHQLV
HHHHHCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHH
EGKSEPWSPAELASARLVSETVADVALQLRSVRMVIAQDQLATISAQVLRSEQPVIIADV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
EGRILLLNEAFEQQLRASHPHIPHLRDLGAYCTAPAEFRANLDDLMRNKRSWRGELTLTG
CCCEEEEEHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEC
GATPQRPLMVRADPVIAPHDRVLGFVLIFSDLTERKTAEAARARFQEEIDGARRPSLRLD
CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QSASLIYKELAASTVENAQLAALEVTHGAEAGSMPEMLESIRNSTARTLGILEHLVWYRS
CHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
QSEE
CCCC
>Mature Secondary Structure 
PVPLTTPAFGHATLANCEREQIHLAGSIQPHGILLAVKEPDNVVIQASINAAEFLNTNS
CCCCCCCCCCCHHHHCCCHHEEEEECCCCCCEEEEEEECCCCEEEEEECCHHHHCCCCC
VVGRPLRDLGGDLALQILPHLNGPLHLAPMTLRCTVGSPPRRVDCTVHRPSNGGLIVELE
CCCCCHHHCCCCEEEHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCEEEEEC
PATKTTNVAPALDGAFHRITSSSSLIGLCDETATIFREITGYDRVMVYRFDEEGHGEVLS
CCCCCCCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
ERRRPDLEAFLGNRYPASDIPQIARRLYERNRVRLLVDVNYTPVPLQPRISPLNGRDLDM
HHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH
SLSCLRSMSPIHQKYLQNMGVGATLVCSLMVSGRLWGLIACHHYEPRFVPFDIRAAGEAL
HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCEEEEEEEECCCCCEEEEEHHHHHHHH
AETCAIRIAALESFAQSQSELVVRRLEQRLVEAVSRDGEWQAALFDGSQSLLQPLGASGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCC
ALLFEGQVMTAGDVPSTQRIRDLATWLDRRRKAPDAPPQGLTVTASLTLDDPSFADIRSI
EEEEECEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHH
ASGLIAAPLSASEGEYLLWFRPEQVRTVTWGGDPLKAVIIGDDPSDLSPRRSFAQWHQLV
HHHHHCCCCCCCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHH
EGKSEPWSPAELASARLVSETVADVALQLRSVRMVIAQDQLATISAQVLRSEQPVIIADV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
EGRILLLNEAFEQQLRASHPHIPHLRDLGAYCTAPAEFRANLDDLMRNKRSWRGELTLTG
CCCEEEEEHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEC
GATPQRPLMVRADPVIAPHDRVLGFVLIFSDLTERKTAEAARARFQEEIDGARRPSLRLD
CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
QSASLIYKELAASTVENAQLAALEVTHGAEAGSMPEMLESIRNSTARTLGILEHLVWYRS
CHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
QSEE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]