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The map label for this gene is ydhC [H]

Identifier: 146338566

GI number: 146338566

Start: 1592523

End: 1593263

Strand: Reverse

Name: ydhC [H]

Synonym: BRADO1487

Alternate gene names: 146338566

Gene position: 1593263-1592523 (Counterclockwise)

Preceding gene: 146338573

Following gene: 146338565

Centisome position: 21.37

GC content: 69.23

Gene sequence:

>741_bases
ATGACCAGCCCGGCACCCCGGCCCCGATTGAAGACGCGCTTCAAGCCTTCGCGGCTGAAGCTGTCATCCGACCAGCCGAC
GCGGCCGCTGGCGCGGCTGTCGCTACCTGATCAGCTCGTCGCCAAGGTGCGCGAGATGATCATCGACGGCGAGCTCGCCG
CGGGCGCGCCGCTGCCGGAGCGGATGCTGTGCGAGACCTTCGGCGTGTCGCGCACGCCGCTGCGCGAGGCGTTCAAGATC
CTCGCCGCCGAGGGCCTGATCACGCTGCGTCCGCACCGCACGCCGGTGGTGACGCCGATCGACGCCCGCGAGATCGCCGA
GATCTTCGACGTGATGGTCGCACTCGACGCCGCCGCAAGCCATGCCGCAGCAACGCGCGCGACAGCCGAGGACATCGCCA
GGCTCGACGCGATGCATGCCGAGCTGGTCGCGCTGCACGGCACGTCGGAGCGCGCGGCCTATTTCCGGCTCAACCAGCAG
ATCCACCTCGAGATCACCAAGCTGGCCGGCAACGCCGTGCTGCTCAACATCTGGAGCACGCTGCATGCGAGCGTGTTCCG
CGCCCGCGCGGTCGCCAATTACGACGCGCGCCGCTGGGACGAGTCGCTCGGCGAGCACGAGGCCTTCATGGCGCTGCTGC
GCACAGGCGACGCCCAGGGCTTCGCACAGGCGCTCAGCGCCCACACCCGCAGGACAGGGGATTCCGTACTGCAGATGCTG
AATCAGAGGTCCAGCGCATAG

Upstream 100 bases:

>100_bases
ATTCAATATCTAGAATAGCATCAAAATTTGCCGTTCTGCCTGATCCGCGGGCGCTCCGCCCGAATCTCAGGCAGCTCCGA
GCGGAGCCGCAGCCCCTGTC

Downstream 100 bases:

>100_bases
ACTTTGTTCACGTCGAACCGGTCATGCTGGCGGCACGACAGATGAAAGCTCTCCGCGTCGGGCCCGACCATGATCCTGCA
ATCGCTCGCCGGTCTTCCGG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTSPAPRPRLKTRFKPSRLKLSSDQPTRPLARLSLPDQLVAKVREMIIDGELAAGAPLPERMLCETFGVSRTPLREAFKI
LAAEGLITLRPHRTPVVTPIDAREIAEIFDVMVALDAAASHAAATRATAEDIARLDAMHAELVALHGTSERAAYFRLNQQ
IHLEITKLAGNAVLLNIWSTLHASVFRARAVANYDARRWDESLGEHEAFMALLRTGDAQGFAQALSAHTRRTGDSVLQML
NQRSSA

Sequences:

>Translated_246_residues
MTSPAPRPRLKTRFKPSRLKLSSDQPTRPLARLSLPDQLVAKVREMIIDGELAAGAPLPERMLCETFGVSRTPLREAFKI
LAAEGLITLRPHRTPVVTPIDAREIAEIFDVMVALDAAASHAAATRATAEDIARLDAMHAELVALHGTSERAAYFRLNQQ
IHLEITKLAGNAVLLNIWSTLHASVFRARAVANYDARRWDESLGEHEAFMALLRTGDAQGFAQALSAHTRRTGDSVLQML
NQRSSA
>Mature_245_residues
TSPAPRPRLKTRFKPSRLKLSSDQPTRPLARLSLPDQLVAKVREMIIDGELAAGAPLPERMLCETFGVSRTPLREAFKIL
AAEGLITLRPHRTPVVTPIDAREIAEIFDVMVALDAAASHAAATRATAEDIARLDAMHAELVALHGTSERAAYFRLNQQI
HLEITKLAGNAVLLNIWSTLHASVFRARAVANYDARRWDESLGEHEAFMALLRTGDAQGFAQALSAHTRRTGDSVLQMLN
QRSSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=220, Percent_Identity=26.3636363636364, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI48994955, Length=226, Percent_Identity=27.4336283185841, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994961, Length=173, Percent_Identity=31.2138728323699, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789353, Length=165, Percent_Identity=27.2727272727273, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27029; Mature: 26898

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSPAPRPRLKTRFKPSRLKLSSDQPTRPLARLSLPDQLVAKVREMIIDGELAAGAPLPE
CCCCCCCCCHHCCCCCCCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCH
RMLCETFGVSRTPLREAFKILAAEGLITLRPHRTPVVTPIDAREIAEIFDVMVALDAAAS
HHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
HAAATRATAEDIARLDAMHAELVALHGTSERAAYFRLNQQIHLEITKLAGNAVLLNIWST
HHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHEEECCEEEEEEEECCCCCCEEHHHHH
LHASVFRARAVANYDARRWDESLGEHEAFMALLRTGDAQGFAQALSAHTRRTGDSVLQML
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHH
NQRSSA
HHHCCC
>Mature Secondary Structure 
TSPAPRPRLKTRFKPSRLKLSSDQPTRPLARLSLPDQLVAKVREMIIDGELAAGAPLPE
CCCCCCCCHHCCCCCCCEEECCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCH
RMLCETFGVSRTPLREAFKILAAEGLITLRPHRTPVVTPIDAREIAEIFDVMVALDAAAS
HHHHHHHCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
HAAATRATAEDIARLDAMHAELVALHGTSERAAYFRLNQQIHLEITKLAGNAVLLNIWST
HHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHEEECCEEEEEEEECCCCCCEEHHHHH
LHASVFRARAVANYDARRWDESLGEHEAFMALLRTGDAQGFAQALSAHTRRTGDSVLQML
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHH
NQRSSA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]