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The map label for this gene is rbsC [H]

Identifier: 146338476

GI number: 146338476

Start: 1487143

End: 1488174

Strand: Reverse

Name: rbsC [H]

Synonym: BRADO1393

Alternate gene names: 146338476

Gene position: 1488174-1487143 (Counterclockwise)

Preceding gene: 146338477

Following gene: 146338475

Centisome position: 19.96

GC content: 67.54

Gene sequence:

>1032_bases
ATGCCTGATAACAGCTCAGCTCAAGCCAAGGTCGTAACGCTGCCGTCGACATCCGACAACAAGCAGCAGCGGTTGCGGGT
GATGATCCGCGCCGCCGGCATGCTGCCGGTGCTGCTGATCCTGTGCATCGGCTTCCACATGCTGTCGGAGGGGCGCTTCT
TCACCGGACAGAATCTCGGCATCGTGCTGCAGCAGGCCGCCGTCAACACCGTGCTTGCGGCCGGCATGACCTTCGTGATC
CTGACCGGCGGGATCGATCTCTCTGTCGGCTCGATCCTTGCCGCGGCTGCGATGGCCGGCCTGACATTGTCGAAGATGCC
CGAGCTCGGCGCGCTGTGGCTGCCGGCCGCGGTGCTCACGGGCCTTGCCTTCGGCGTCGTCAACGGCGCGCTGATCGCGC
TGCTCAGGCTGCCGCCCTTCATTGTCACGCTCGGCTCGCTCACCGCGGTGCGCGGCCTCGCCCGCCTGATGGGCGGCGAC
ACCACCGTGTTCAACCCGACGATCCCCTACGCCTTCATCGGCAACGCCTCGCTGACGATCATTCCCGGCGTGCTCTCGAT
TCCCTGGCTGTCGGTGATCGCGCTGCTCGTCATCCTCGGCTCGTGGCTGATCCTGCGCCGCACCGTGCTCGGCGTGCACA
TCTACGCCGTCGGCGGCAATGAGAGCGCGGCGCGGCTCGCCGGCATCAAGGTCTGGGGCGTGCTGCTGTTCGTCTACGGC
ATGTCCGGCCTGCTCGCCGGCCTGGGCGGCGGCATGCAGGCGGCGCGGCTCTACGCGGCGAACGGCCTGCAGCTCGGCCA
GTCCTACGAGCTCGACGCGATCACCGCGGTCATCCTCGGCGGCACCTCCTTCGTCGGCGGCATCGGCTCGATCTGGGGTA
CCCTGGTCGGCGCGCTCATCATCGCCGTGTTGTCGAACGGGCTCATATTGGTCGGCGTGTCCGACATCTGGCAATACGTC
ATCAAGGGCCTCGTCATCATCGGCGCCGTCGCGCTCGACCGCTACCGGCTACAGGGCTCGGCCCGCACCTGA

Upstream 100 bases:

>100_bases
ATGCGCGAAGGCCATCTCGCCGGCGAGTTGCAGCAGAGCACGGCATCACCCATCACCCAGGAAGACATCATGGCGCTGGC
CACCGGGACGGAGCACGTCG

Downstream 100 bases:

>100_bases
GATCAACCGGCGGGCCGCTGATGGCGGCAAGCTTCAACGTTCTTCCACGGCCGCTGGTCCGCCGTGCGCAGGGATTTAAA
AAGGACCAGGGAGGAAACCA

Product: sugar ABC transporter membrane protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MPDNSSAQAKVVTLPSTSDNKQQRLRVMIRAAGMLPVLLILCIGFHMLSEGRFFTGQNLGIVLQQAAVNTVLAAGMTFVI
LTGGIDLSVGSILAAAAMAGLTLSKMPELGALWLPAAVLTGLAFGVVNGALIALLRLPPFIVTLGSLTAVRGLARLMGGD
TTVFNPTIPYAFIGNASLTIIPGVLSIPWLSVIALLVILGSWLILRRTVLGVHIYAVGGNESAARLAGIKVWGVLLFVYG
MSGLLAGLGGGMQAARLYAANGLQLGQSYELDAITAVILGGTSFVGGIGSIWGTLVGALIIAVLSNGLILVGVSDIWQYV
IKGLVIIGAVALDRYRLQGSART

Sequences:

>Translated_343_residues
MPDNSSAQAKVVTLPSTSDNKQQRLRVMIRAAGMLPVLLILCIGFHMLSEGRFFTGQNLGIVLQQAAVNTVLAAGMTFVI
LTGGIDLSVGSILAAAAMAGLTLSKMPELGALWLPAAVLTGLAFGVVNGALIALLRLPPFIVTLGSLTAVRGLARLMGGD
TTVFNPTIPYAFIGNASLTIIPGVLSIPWLSVIALLVILGSWLILRRTVLGVHIYAVGGNESAARLAGIKVWGVLLFVYG
MSGLLAGLGGGMQAARLYAANGLQLGQSYELDAITAVILGGTSFVGGIGSIWGTLVGALIIAVLSNGLILVGVSDIWQYV
IKGLVIIGAVALDRYRLQGSART
>Mature_342_residues
PDNSSAQAKVVTLPSTSDNKQQRLRVMIRAAGMLPVLLILCIGFHMLSEGRFFTGQNLGIVLQQAAVNTVLAAGMTFVIL
TGGIDLSVGSILAAAAMAGLTLSKMPELGALWLPAAVLTGLAFGVVNGALIALLRLPPFIVTLGSLTAVRGLARLMGGDT
TVFNPTIPYAFIGNASLTIIPGVLSIPWLSVIALLVILGSWLILRRTVLGVHIYAVGGNESAARLAGIKVWGVLLFVYGM
SGLLAGLGGGMQAARLYAANGLQLGQSYELDAITAVILGGTSFVGGIGSIWGTLVGALIIAVLSNGLILVGVSDIWQYVI
KGLVIIGAVALDRYRLQGSART

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4158

COG function: function code R; Predicted ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=295, Percent_Identity=43.728813559322, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=36.6459627329193, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI145693152, Length=315, Percent_Identity=34.2857142857143, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788896, Length=342, Percent_Identity=33.6257309941521, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1788471, Length=342, Percent_Identity=32.4561403508772, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI145693214, Length=271, Percent_Identity=38.7453874538745, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87082395, Length=279, Percent_Identity=34.4086021505376, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1789992, Length=402, Percent_Identity=27.8606965174129, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1787794, Length=279, Percent_Identity=32.258064516129, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=32.1799307958478, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35428; Mature: 35297

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDNSSAQAKVVTLPSTSDNKQQRLRVMIRAAGMLPVLLILCIGFHMLSEGRFFTGQNLG
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCH
IVLQQAAVNTVLAAGMTFVILTGGIDLSVGSILAAAAMAGLTLSKMPELGALWLPAAVLT
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHH
GLAFGVVNGALIALLRLPPFIVTLGSLTAVRGLARLMGGDTTVFNPTIPYAFIGNASLTI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCEEE
IPGVLSIPWLSVIALLVILGSWLILRRTVLGVHIYAVGGNESAARLAGIKVWGVLLFVYG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
MSGLLAGLGGGMQAARLYAANGLQLGQSYELDAITAVILGGTSFVGGIGSIWGTLVGALI
HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHHHHH
IAVLSNGLILVGVSDIWQYVIKGLVIIGAVALDRYRLQGSART
HHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PDNSSAQAKVVTLPSTSDNKQQRLRVMIRAAGMLPVLLILCIGFHMLSEGRFFTGQNLG
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCH
IVLQQAAVNTVLAAGMTFVILTGGIDLSVGSILAAAAMAGLTLSKMPELGALWLPAAVLT
HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHH
GLAFGVVNGALIALLRLPPFIVTLGSLTAVRGLARLMGGDTTVFNPTIPYAFIGNASLTI
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEECCCCEEE
IPGVLSIPWLSVIALLVILGSWLILRRTVLGVHIYAVGGNESAARLAGIKVWGVLLFVYG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
MSGLLAGLGGGMQAARLYAANGLQLGQSYELDAITAVILGGTSFVGGIGSIWGTLVGALI
HHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHEECCCHHHHHHHHHHHHHHHHHH
IAVLSNGLILVGVSDIWQYVIKGLVIIGAVALDRYRLQGSART
HHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]