Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 146337832

GI number: 146337832

Start: 750791

End: 751504

Strand: Reverse

Name: radC [C]

Synonym: BRADO0713

Alternate gene names: 146337832

Gene position: 751504-750791 (Counterclockwise)

Preceding gene: 146337833

Following gene: 146337830

Centisome position: 10.08

GC content: 65.27

Gene sequence:

>714_bases
ATGCCGGACAAAGCCCTCCCCCCCGATGACAGGCCGACCGAGACGCCGCATTACCACGGCCATCGGCAGCGCCTGCGCGA
GCGCTTTCACAGCGCCGGCCCGGATGCGCTCAACGACTACGAGCTCCTGGAGATGGCGCTGTTTCCGGCCTTGCCGCGAC
GCGACGTCAAGCCGCTGGCCAAGGCGCTGATCAAGACGTTCGGGTCGTTCGCCGACGTCATTCACGCGCCGGAGCAGCGC
CTGCGCGAGTTCGACGGCATCGGCGACGCGTCGATCACGCAGCTGAAGCTGATCGCAGCGGCCGCGCACCGGATCGCCAA
GGGCGAGGTCCGGCAGAAGCATGCGCTGGCGTCGTGGCAGGAGGTGATCTCCTATTGCCGGACCAGCATGGCATTCGCCG
ACAAGGAGCAGTTCAGGCTGCTGTTTCTCGACAAACGCAACCAGCTGATCGCCGACGAGGTGCAGCAGACCGGCACCGTG
GATCACACCCCGGTGTATCCGCGCGAGGTGATCAAGCGCGCGCTGGAATTATCTGCCACCGCGATCATCCTGGTGCACAA
TCACCCGTCCGGCGATCCGACGCCGTCGCAGGCCGACATCCGCATGACCAAGACAATCGTGGAGATCGCAAAGCCGCTCG
GCATCACCGTGCACGACCACATCATCGTCGGCCGGAACGGGCACACGAGCCTGAAGAGCAACGGCCTGATGTGA

Upstream 100 bases:

>100_bases
TCTGCTGCTGGTGCTGACGGGACGCGCGACCTGACCGACAATGCGCGGATGCCGGCACTTCGAGGTTGCAAAAACAATAC
GCCGCGGCATGCTGGCGCCG

Downstream 100 bases:

>100_bases
TCAAACGGAGCAGCCGCGTGATTCCACTCGGCAGAAAGCCGTGCGTCAACCGCGCGCGGCGGTGCGGTCGCAGCCCGGCA
GATCCTGAAACGTGACCGCG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MPDKALPPDDRPTETPHYHGHRQRLRERFHSAGPDALNDYELLEMALFPALPRRDVKPLAKALIKTFGSFADVIHAPEQR
LREFDGIGDASITQLKLIAAAAHRIAKGEVRQKHALASWQEVISYCRTSMAFADKEQFRLLFLDKRNQLIADEVQQTGTV
DHTPVYPREVIKRALELSATAIILVHNHPSGDPTPSQADIRMTKTIVEIAKPLGITVHDHIIVGRNGHTSLKSNGLM

Sequences:

>Translated_237_residues
MPDKALPPDDRPTETPHYHGHRQRLRERFHSAGPDALNDYELLEMALFPALPRRDVKPLAKALIKTFGSFADVIHAPEQR
LREFDGIGDASITQLKLIAAAAHRIAKGEVRQKHALASWQEVISYCRTSMAFADKEQFRLLFLDKRNQLIADEVQQTGTV
DHTPVYPREVIKRALELSATAIILVHNHPSGDPTPSQADIRMTKTIVEIAKPLGITVHDHIIVGRNGHTSLKSNGLM
>Mature_236_residues
PDKALPPDDRPTETPHYHGHRQRLRERFHSAGPDALNDYELLEMALFPALPRRDVKPLAKALIKTFGSFADVIHAPEQRL
REFDGIGDASITQLKLIAAAAHRIAKGEVRQKHALASWQEVISYCRTSMAFADKEQFRLLFLDKRNQLIADEVQQTGTVD
HTPVYPREVIKRALELSATAIILVHNHPSGDPTPSQADIRMTKTIVEIAKPLGITVHDHIIVGRNGHTSLKSNGLM

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=210, Percent_Identity=33.8095238095238, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI2367100, Length=123, Percent_Identity=47.9674796747967, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788997, Length=123, Percent_Identity=44.7154471544715, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1788312, Length=123, Percent_Identity=45.5284552845528, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26531; Mature: 26400

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDKALPPDDRPTETPHYHGHRQRLRERFHSAGPDALNDYELLEMALFPALPRRDVKPLA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
KALIKTFGSFADVIHAPEQRLREFDGIGDASITQLKLIAAAAHRIAKGEVRQKHALASWQ
HHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVISYCRTSMAFADKEQFRLLFLDKRNQLIADEVQQTGTVDHTPVYPREVIKRALELSAT
HHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCE
AIILVHNHPSGDPTPSQADIRMTKTIVEIAKPLGITVHDHIIVGRNGHTSLKSNGLM
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
PDKALPPDDRPTETPHYHGHRQRLRERFHSAGPDALNDYELLEMALFPALPRRDVKPLA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH
KALIKTFGSFADVIHAPEQRLREFDGIGDASITQLKLIAAAAHRIAKGEVRQKHALASWQ
HHHHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVISYCRTSMAFADKEQFRLLFLDKRNQLIADEVQQTGTVDHTPVYPREVIKRALELSAT
HHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCE
AIILVHNHPSGDPTPSQADIRMTKTIVEIAKPLGITVHDHIIVGRNGHTSLKSNGLM
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA