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The map label for this gene is ydeB [H]

Identifier: 146337765

GI number: 146337765

Start: 664947

End: 665561

Strand: Direct

Name: ydeB [H]

Synonym: BRADO0642

Alternate gene names: 146337765

Gene position: 664947-665561 (Clockwise)

Preceding gene: 146337764

Following gene: 146337768

Centisome position: 8.92

GC content: 65.53

Gene sequence:

>615_bases
TTGCCGACTCAGCGCCAGGGCTTCAAGACCAACGAATTCGTCGTCTACCCCGCTCACGGCGTCGGCCAGATCCTGGCCAT
CGAGGAGCAGGAGATCGCGGGCGCCAAGCTCGAGCTGTTCGTCATCAACTTCATCAAGGACAAGATGACGTTGCGCGTGC
CGACCGCCAAGGTCGCCAATGTCGGCATGCGCAAGCTGTCCGACCCGGCGCTGGTCAAGAAGGCACTGGAGACGCTGAAG
GGCCGCGCCCGCGTGAAGCGCACGATGTGGTCGCGCCGCGCCCAGGAGTACGAAGCGAAGATCAATTCGGGCGACATCGT
CGCGATCGCCGAGGTCGTGCGCGACCTGTATCGCTCGGAGTCGCAGCCGGAGCAGTCCTACAGCGAACGTCAGCTGTATG
AAGCCGCGCTGGATCGCCTGTCGCGCGAGATCGCGGTCGTGCAGCACTCGACCGAGACCGAAGCCGTCAAGGAGATCGAA
ACGCAGCTCGCCAAGAGCCCGCGCCGCGGCGCCAAGACCGAAGCCGACGCTGTCGCCGAGGGCGATGCCGACGCCGAGAG
TGATGCCGACGATATCGACGGCGACGACACCGCCGTGGCGGATGAGGCTGCCTGA

Upstream 100 bases:

>100_bases
GACGGCCGTTCCTGCTGCTGCCCCTGCTGCCGCCAAGCCCCCCGTTGCCGCCAAGCCGGCTGCCCCCGCTGCGGCCGCGC
CGCGCGTCGAGGAGAAGAAA

Downstream 100 bases:

>100_bases
TCGATCGCTAGCTCGTTTTCCAATTAGTTGCTTACGAAAGCCCGGCCGCGAGGTCGGGCTTTTTGTTTGGTGCCAGTCTG
TCTGCCGGCCGTCCGCACGA

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MPTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSDPALVKKALETLK
GRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIE
TQLAKSPRRGAKTEADAVAEGDADAESDADDIDGDDTAVADEAA

Sequences:

>Translated_204_residues
MPTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSDPALVKKALETLK
GRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIE
TQLAKSPRRGAKTEADAVAEGDADAESDADDIDGDDTAVADEAA
>Mature_203_residues
PTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSDPALVKKALETLKG
RARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIET
QLAKSPRRGAKTEADAVAEGDADAESDADDIDGDDTAVADEAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 22536; Mature: 22404

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVAN
CCCCCCCCCCCCEEEECCCCCCEEEEECHHHHCCCEEHHHHHHHHHCCCEEECCCHHHHH
VGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
SQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIETQLAKSPRRGAKTEADAVAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHC
GDADAESDADDIDGDDTAVADEAA
CCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTQRQGFKTNEFVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVAN
CCCCCCCCCCCEEEECCCCCCEEEEECHHHHCCCEEHHHHHHHHHCCCEEECCCHHHHH
VGMRKLSDPALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
SQPEQSYSERQLYEAALDRLSREIAVVQHSTETEAVKEIETQLAKSPRRGAKTEADAVAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHC
GDADAESDADDIDGDDTAVADEAA
CCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]