Click here to switch to the map view.

The map label for this gene is cspA [H]

Identifier: 146337756

GI number: 146337756

Start: 655224

End: 655430

Strand: Direct

Name: cspA [H]

Synonym: BRADO0631

Alternate gene names: 146337756

Gene position: 655224-655430 (Clockwise)

Preceding gene: 146337754

Following gene: 146337757

Centisome position: 8.79

GC content: 57.97

Gene sequence:

>207_bases
ATGCAGGGTACCGTGAAGTGGTTCAACGGCCAGAAGGGCTTCGGTTTCATTCAGCCGCAGGACGGCGGGAACGACGTGTT
CGTTCACATCAGCGCCGTTGAGCGTGCTGGTCTCGCAGGTCTGGCCGAAGGTCAGAAGCTGAATTACGACGTCAAGACCG
ACAAGATGCGCGGCAAGACCAGCGCGGAAAATCTCTCGCTGATCTGA

Upstream 100 bases:

>100_bases
TGCCTTTCTGAATGTGCCCGCGGGCTATTTCCAAAGTCATCGCTCAGTTGAATGATGAGGTCGTGCGGCGTTCGCGCGAC
GATTGCGCTTGGAGATAGAC

Downstream 100 bases:

>100_bases
TCGCCTTGATCTTTCGATCTCAAGCCATTTCACGGATGTACTGAAATGGCTGGACTGCCCGCTCGGTCTCATGATTGAGC
GGGCTGTTTGCGTTTCCACG

Product: DNA binding cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MQGTVKWFNGQKGFGFIQPQDGGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRGKTSAENLSLI

Sequences:

>Translated_68_residues
MQGTVKWFNGQKGFGFIQPQDGGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRGKTSAENLSLI
>Mature_68_residues
MQGTVKWFNGQKGFGFIQPQDGGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRGKTSAENLSLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=67, Percent_Identity=47.7611940298507, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1789979, Length=53, Percent_Identity=54.7169811320755, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1788126, Length=68, Percent_Identity=48.5294117647059, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1787839, Length=53, Percent_Identity=52.8301886792453, Blast_Score=65, Evalue=8e-13,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=44.7761194029851, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1787834, Length=52, Percent_Identity=50, Blast_Score=62, Evalue=5e-12,
Organism=Escherichia coli, GI1787107, Length=50, Percent_Identity=52, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7370; Mature: 7370

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGTVKWFNGQKGFGFIQPQDGGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRGKT
CCCCEEEECCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEECCEECCCCCCCCC
SAENLSLI
CCCCEECC
>Mature Secondary Structure
MQGTVKWFNGQKGFGFIQPQDGGNDVFVHISAVERAGLAGLAEGQKLNYDVKTDKMRGKT
CCCCEEEECCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEECCEECCCCCCCCC
SAENLSLI
CCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10618253; 11481430 [H]